INFERNAL1/a [1.1.5 | Sep 2023] NAME DnaX ACC RF00382 DESC DnaX ribosomal frameshifting element STATES 199 NODES 56 CLEN 65 W 81 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 02:03:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00382/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 1.958008 CKSUM 3595162137 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.40 NC 34.40 EFP7GF -9.4927 0.71903 ECMLC 0.59880 -9.91622 0.34371 1600000 558905 0.002147 ECMGC 0.42031 -19.09680 -5.78396 1600000 107690 0.003714 ECMLI 0.59904 -8.07336 1.33941 1600000 337282 0.003558 ECMGI 0.44777 -14.14542 -2.46282 1600000 74798 0.005348 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 81 101 -6.960 -7.167 -0.053 -5.581 IL 1 1 2 1 4 1 22 85 105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 22 81 101 -7.975 -0.020 -6.629 -0.337 0.159 -0.535 0.487 D 4 2 3 5 3 0 16 80 100 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 21 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 21 80 100 -7.975 -0.020 -6.629 -0.646 -1.445 1.152 -0.375 D 7 5 3 8 3 0 15 79 99 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 20 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 20 79 99 -7.975 -0.020 -6.629 -1.768 1.631 -2.592 -1.176 D 10 8 3 11 3 0 15 78 98 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 19 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 19 78 98 -7.975 -0.020 -6.629 1.724 -2.394 -2.023 -1.938 D 13 11 3 14 3 0 14 77 97 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 18 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 19 77 97 -7.975 -0.020 -6.629 -1.604 -2.828 1.729 -2.215 D 16 14 3 17 3 0 13 76 96 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 18 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 18 76 96 -7.975 -0.020 -6.629 -1.604 -2.828 1.729 -2.215 D 19 17 3 20 3 0 12 75 95 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 17 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 17 75 95 -7.975 -0.020 -6.629 -1.604 -2.828 1.729 -2.215 D 22 20 3 23 3 0 11 73 93 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 16 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 16 74 94 -7.975 -0.020 -6.629 1.724 -2.394 -2.023 -1.938 D 25 23 3 26 3 0 11 72 92 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 15 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 15 73 93 -7.975 -0.020 -6.629 -1.604 -2.828 1.729 -2.215 D 28 26 3 29 3 0 10 71 91 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 15 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 15 72 92 -7.975 -0.020 -6.629 -0.973 1.134 -1.790 0.009 D 31 29 3 32 3 0 9 70 90 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 14 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 14 71 91 -7.975 -0.020 -6.629 1.724 -2.394 -2.023 -1.938 D 34 32 3 35 3 0 8 69 89 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 13 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 13 70 89 -7.975 -0.020 -6.629 1.724 -2.394 -2.023 -1.938 D 37 35 3 38 3 0 7 68 88 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 12 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 12 69 88 -7.975 -0.020 -6.629 -1.768 1.631 -2.592 -1.176 D 40 38 3 41 3 0 6 67 87 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 11 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - C - - - ML 42 41 3 44 3 1 12 68 87 -7.975 -0.020 -6.629 -1.768 1.631 -2.592 -1.176 D 43 41 3 44 3 0 5 66 86 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 11 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 45 44 3 47 3 1 11 67 86 -7.975 -0.020 -6.629 1.724 -2.394 -2.023 -1.938 D 46 44 3 47 3 0 5 65 85 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 10 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 48 47 3 50 3 1 10 66 85 -7.975 -0.020 -6.629 1.189 -0.610 -1.206 -0.663 D 49 47 3 50 3 0 4 64 84 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 9 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - a - - - ML 51 50 3 53 3 1 9 64 84 -7.975 -0.020 -6.629 0.752 -0.505 -0.263 -0.363 D 52 50 3 53 3 0 3 63 83 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 8 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - a - - - ML 54 53 3 56 3 1 9 63 83 -7.975 -0.020 -6.629 0.124 0.006 0.074 -0.229 D 55 53 3 56 3 0 3 62 82 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 7 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 8 62 82 -7.975 -0.020 -6.629 -1.768 1.631 -2.592 -1.176 D 58 56 3 59 3 0 2 61 81 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 7 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 60 59 3 62 3 1 7 61 81 -7.975 -0.020 -6.629 1.724 -2.394 -2.023 -1.938 D 61 59 3 62 3 0 1 60 80 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 6 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 7 60 80 -7.975 -0.020 -6.629 1.724 -2.394 -2.023 -1.938 D 64 62 3 65 3 0 1 59 78 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 5 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 66 65 3 68 3 1 6 59 79 -7.975 -0.020 -6.629 1.724 -2.394 -2.023 -1.938 D 67 65 3 68 3 0 0 58 77 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 5 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 69 68 3 71 3 1 6 58 77 -7.975 -0.020 -6.629 1.724 -2.394 -2.023 -1.938 D 70 68 3 71 3 0 0 57 76 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 4 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - A - - - ML 72 71 3 74 3 1 5 57 76 -7.975 -0.020 -6.629 1.724 -2.394 -2.023 -1.938 D 73 71 3 74 3 0 0 56 75 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 3 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 4 56 75 -7.975 -0.020 -6.629 1.724 -2.394 -2.023 -1.938 D 76 74 3 77 3 0 0 55 74 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 3 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - G - - - ML 78 77 3 80 3 1 4 55 74 -7.975 -0.020 -6.629 -1.604 -2.828 1.729 -2.215 D 79 77 3 80 3 0 0 54 73 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 2 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 81 80 3 83 3 1 3 54 73 -7.975 -0.020 -6.629 1.724 -2.394 -2.023 -1.938 D 82 80 3 83 3 0 0 53 72 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 2 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 84 83 3 86 3 1 3 53 72 -7.975 -0.020 -6.629 -1.604 -2.828 1.729 -2.215 D 85 83 3 86 3 0 0 51 71 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 2 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - U - - - ML 87 86 3 89 3 1 3 52 71 -7.975 -0.020 -6.629 -1.506 -1.499 -2.241 1.624 D 88 86 3 89 3 0 0 50 70 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - G - - - ML 90 89 3 92 3 1 2 51 70 -7.975 -0.020 -6.629 -1.604 -2.828 1.729 -2.215 D 91 89 3 92 3 0 0 49 69 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - A - - - ML 93 92 3 95 3 1 2 50 69 -8.365 -0.019 -6.683 1.724 -2.394 -2.023 -1.938 D 94 92 3 95 3 0 0 48 67 -5.620 -0.734 -1.403 IL 95 95 3 95 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 65 - U - - MR 96 95 3 98 3 1 1 49 68 -8.365 -0.019 -6.683 -0.161 -0.907 -1.316 1.118 D 97 95 3 98 3 0 0 47 66 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 64 - A - - MR 99 98 3 101 3 1 1 47 67 -8.365 -0.019 -6.683 1.178 -0.589 -1.200 -0.651 D 100 98 3 101 3 0 0 46 65 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 63 - A - - MR 102 101 3 104 3 1 1 46 66 -8.365 -0.019 -6.683 1.178 -0.589 -1.200 -0.651 D 103 101 3 104 3 0 0 45 64 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 62 - G - - MR 105 104 3 107 5 1 1 45 65 -7.103 -0.039 -6.918 -7.130 -8.022 -0.589 -1.358 1.071 -0.246 D 106 104 3 107 5 0 0 44 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 107 107 3 107 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 32 61 A U - - MP 108 107 3 112 6 2 2 44 64 -9.112 -9.051 -0.021 -7.828 -8.108 -8.503 -3.815 -2.840 -3.832 3.347 -4.181 -5.246 0.120 -3.872 -3.722 1.053 -4.271 -0.312 -0.297 -4.430 -1.821 -2.664 ML 109 107 3 112 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 3 112 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 3 112 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 33 60 C G - - MP 114 113 6 118 6 2 2 42 62 -9.112 -9.051 -0.021 -7.828 -8.108 -8.503 -4.579 -4.488 -4.264 -0.717 -2.975 -4.672 3.560 -3.788 -4.314 -0.481 -4.572 -2.435 0.536 -4.646 -0.682 -3.153 ML 115 113 6 118 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 34 59 C G - - MP 120 119 6 124 6 2 2 40 60 -9.112 -9.051 -0.021 -7.828 -8.108 -8.503 -4.579 -4.488 -4.264 -0.717 -2.975 -4.672 3.560 -3.788 -4.314 -0.481 -4.572 -2.435 0.536 -4.646 -0.682 -3.153 ML 121 119 6 124 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 35 58 G C - - MP 126 125 6 130 6 2 2 38 58 -9.112 -9.051 -0.021 -7.828 -8.108 -8.503 -4.767 -3.106 -4.868 0.183 -5.268 -4.704 -0.627 -5.113 -4.344 3.644 -4.679 -0.806 -1.011 -4.484 -2.665 -3.745 ML 127 125 6 130 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 36 57 G C - - MP 132 131 6 136 6 2 2 36 56 -9.112 -9.051 -0.021 -7.828 -8.108 -8.503 -4.767 -3.106 -4.868 0.183 -5.268 -4.704 -0.627 -5.113 -4.344 3.644 -4.679 -0.806 -1.011 -4.484 -2.665 -3.745 ML 133 131 6 136 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 37 56 c g - - MP 138 137 6 142 4 2 2 34 53 -6.960 -7.167 -0.053 -5.581 -3.276 -3.257 -3.255 0.260 -2.429 -3.894 2.952 0.205 -3.274 0.440 -3.706 -1.393 1.168 -3.482 -0.183 -2.232 ML 139 137 6 142 4 1 1 35 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 35 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 34 53 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 36 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - A - - - ML 144 143 6 146 3 1 1 32 51 -8.365 -0.019 -6.683 1.724 -2.394 -2.023 -1.938 D 145 143 6 146 3 0 0 31 49 -5.620 -0.734 -1.403 IL 146 146 3 146 3 1 1 33 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 55 - G - - MR 147 146 3 149 5 1 1 31 50 -7.103 -0.039 -6.918 -7.130 -8.022 -1.604 -2.828 1.729 -2.215 D 148 146 3 149 5 0 0 29 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 149 149 3 149 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 39 54 G C - - MP 150 149 3 154 6 2 2 30 49 -9.112 -9.051 -0.021 -7.828 -8.108 -8.503 -4.767 -3.106 -4.868 0.183 -5.268 -4.704 -0.627 -5.113 -4.344 3.644 -4.679 -0.806 -1.011 -4.484 -2.665 -3.745 ML 151 149 3 154 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 3 154 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 3 154 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 40 53 C G - - MP 156 155 6 160 4 2 2 28 47 -6.875 -8.120 -0.080 -4.574 -4.579 -4.488 -4.264 -0.717 -2.975 -4.672 3.560 -3.788 -4.314 -0.481 -4.572 -2.435 0.536 -4.646 -0.682 -3.153 ML 157 155 6 160 4 1 1 27 46 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 27 46 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 25 44 -12.737 -14.007 -2.036 -0.404 IL 160 160 5 160 4 1 1 27 46 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 28 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 52 - C - - MR 162 161 6 164 5 1 1 26 45 -7.103 -0.039 -6.918 -7.130 -8.022 -1.768 1.631 -2.592 -1.176 D 163 161 6 164 5 0 0 24 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 164 164 3 164 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 41 51 C G - - MP 165 164 3 169 6 2 2 25 44 -9.112 -9.051 -0.021 -7.828 -8.108 -8.503 -3.370 -3.322 -3.401 0.041 -2.741 -4.061 3.203 -3.343 -3.430 0.252 -0.187 -1.527 0.780 -3.607 -0.577 -2.442 ML 166 164 3 169 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 3 169 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 3 169 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 42 50 g c - - MP 171 170 6 175 6 2 2 23 42 -9.112 -9.051 -0.021 -7.828 -8.108 -8.503 -2.952 -2.547 -3.000 0.927 -0.191 -3.734 1.357 -3.169 -3.089 2.624 -3.556 -0.494 0.949 -3.092 -0.554 -2.033 ML 172 170 6 175 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 43 49 C G - - MP 177 176 6 181 4 2 2 21 39 -6.960 -7.167 -0.053 -5.581 -4.579 -4.488 -4.264 -0.717 -2.975 -4.672 3.560 -3.788 -4.314 -0.481 -4.572 -2.435 0.536 -4.646 -0.682 -3.153 ML 178 176 6 181 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 180 176 6 181 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 181 181 5 181 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 182 182 6 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 44 - u - - - ML 183 182 6 185 3 1 1 18 36 -7.975 -0.020 -6.629 0.384 -0.837 -1.091 0.736 D 184 182 6 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 45 - a - - - ML 186 185 3 188 3 1 1 16 35 -7.975 -0.020 -6.629 0.395 -0.810 -0.277 0.367 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 46 - c - - - ML 189 188 3 191 3 1 1 15 33 -7.975 -0.020 -6.629 -0.576 0.904 -0.557 -0.363 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 47 - c - - - ML 192 191 3 194 3 1 1 13 31 -7.975 -0.020 -6.629 -0.063 0.915 -1.399 -0.363 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 48 - c - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 -0.063 0.915 -1.399 -0.363 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME DnaX ACC RF00382 DESC DnaX ribosomal frameshifting element LENG 65 MAXL 149 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 02:03:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00382/CM NSEQ 5 EFFN 2.407227 CKSUM 3595162137 STATS LOCAL MSV -8.6895 0.71903 STATS LOCAL VITERBI -8.8009 0.71903 STATS LOCAL FORWARD -3.4234 0.71903 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.20060 1.34708 1.22478 1.92989 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 0.00000 * 1 1.66697 1.24688 1.76103 1.04437 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 2 1.94083 2.50385 0.52416 1.70049 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 3 2.88485 0.19379 3.46110 2.42009 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 4 0.14971 3.27103 2.99200 2.97817 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 5 2.73292 3.61523 0.14281 3.19067 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 6 2.73292 3.61523 0.14281 3.19067 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 7 2.73292 3.61523 0.14281 3.19067 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 8 0.14971 3.27103 2.99200 2.97817 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 9 2.73292 3.61523 0.14281 3.19067 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 10 2.19454 0.53661 2.77547 1.42072 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 11 0.14971 3.27103 2.99200 2.97817 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 12 0.14971 3.27103 2.99200 2.97817 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 13 2.88485 0.19379 3.46110 2.42009 13 C - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 14 2.88485 0.19379 3.46110 2.42009 14 C - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 15 0.14971 3.27103 2.99200 2.97817 15 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 16 0.51592 1.82470 2.31769 1.94294 16 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 17 0.84065 1.74074 1.56704 1.69000 17 a - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 18 1.31587 1.35888 1.30478 1.59170 18 g - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 19 2.88485 0.19379 3.46110 2.42009 19 C - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 20 0.14971 3.27103 2.99200 2.97817 20 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 21 0.14971 3.27103 2.99200 2.97817 21 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 22 0.14971 3.27103 2.99200 2.97817 22 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 23 0.14971 3.27103 2.99200 2.97817 23 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 24 0.14971 3.27103 2.99200 2.97817 24 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 25 0.14971 3.27103 2.99200 2.97817 25 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 26 2.73292 3.61523 0.14281 3.19067 26 G - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 27 0.14971 3.27103 2.99200 2.97817 27 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 28 2.73292 3.61523 0.14281 3.19067 28 G - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 29 2.63974 2.59864 3.15834 0.20856 29 U - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 30 2.73292 3.61523 0.14281 3.19067 30 G - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 31 0.14971 3.27103 2.99200 2.97817 31 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 32 0.32932 2.80991 1.85927 2.73965 32 A - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 33 3.22844 0.23260 3.00700 2.13309 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 34 3.22891 0.23255 3.00723 2.13317 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 35 2.60564 3.27227 0.16497 3.21138 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 36 2.60521 3.27175 0.16506 3.21066 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 37 2.48495 0.48248 2.27446 1.62676 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 38 0.14971 3.27103 2.99200 2.97817 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 39 2.60457 3.27098 0.16520 3.20958 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 40 3.22875 0.23257 3.00715 2.13314 40 C - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 41 2.57531 0.49786 1.84514 1.84493 41 C - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 42 1.97172 1.52578 0.74181 1.78928 42 g - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 43 3.21980 0.23352 3.00284 2.13157 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 44 1.11136 2.02426 2.20364 0.84771 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 45 1.10422 1.98940 1.57461 1.12496 45 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 46 1.89240 0.68362 1.79424 1.72455 46 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 47 1.46435 0.68408 2.46979 1.71694 47 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 48 1.46435 0.68408 2.46979 1.71694 48 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 49 2.41055 3.17396 0.20095 2.98684 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 50 1.68225 0.81288 1.64059 1.73385 50 c - - > 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 51 2.09952 2.54224 0.34875 2.37275 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 52 2.88485 0.19379 3.46110 2.42009 52 C - - - 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 53 2.41415 3.17893 0.19994 2.99281 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 54 3.43049 0.19391 3.11538 2.30726 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 55 2.73292 3.61523 0.14281 3.19067 55 G - - - 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 56 1.88582 2.44417 0.54662 1.70050 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 57 3.41313 0.19541 3.10772 2.30398 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 58 3.41580 0.19518 3.10890 2.30449 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 59 2.41274 3.17698 0.20034 2.99047 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 60 2.41410 3.17886 0.19995 2.99272 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 61 2.97768 2.15846 2.62615 0.27282 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 62 1.89254 2.43440 0.58030 1.59981 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 63 0.52359 1.80804 2.31263 1.93356 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 64 0.52359 1.80804 2.31263 1.93356 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 65 1.53266 2.09507 2.39075 0.56314 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.01983 3.93048 * 1.46634 0.26236 0.00000 * //