# STOCKHOLM 1.0
#=GF ID DnaX
#=GF AC RF00382
#=GF DE DnaX ribosomal frameshifting element
#=GF AU Moxon SJ; 0000-0003-4644-1816
#=GF GA 35.0
#=GF NC 34.4
#=GF TC 35.4
#=GF SE PMID:9300054
#=GF SS Published; PMID:9300054
#=GF TP Cis-reg; frameshift_element;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.73 -Z 2958934 CM SEQDB
#=GF DR GO; 0006452; translational frameshifting;
#=GF DR SO; 0001427; cis_regulatory_frameshift_element;
#=GF RN [1]
#=GF RM 9300054
#=GF RT Structural probing and mutagenic analysis of the stem-loop required for
#=GF RT Escherichia coli dnaX ribosomal frameshifting: programmed efficiency of
#=GF RT 50%.
#=GF RA Larsen B, Gesteland RF, Atkins JF
#=GF RL J Mol Biol 1997;271:47-60.
#=GF RN [2]
#=GF RM 9209069
#=GF RT Conservation of the Escherichia coli dnaX programmed ribosomal frameshift
#=GF RT signal in Salmonella typhimurium.
#=GF RA Blinkova A, Burkart MF, Owens TD, Walker JR
#=GF RL J Bacteriol 1997;179:4438-4442.
#=GF CC This family represents a ribosomal frameshifting element found in the mRNA
#=GF CC of the dnaX gene in E. coli. The dnaX gene has two encoded products tau
#=GF CC and gamma which are produced in a 1:1 ratio. The gamma protein is
#=GF CC synthesised due to programmed frameshifting and is shorter than tau. The
#=GF CC two products of the dnaX gene are DNA polymerase III subunits [1,2].
#=GF WK DnaX_ribosomal_frameshifting_element
#=GF SQ 5

X04487.1/1830-1894         UGCAGGGAGCAACCAAAGCAAAAAAGAGUGAACCGGCAGCCGCUACCCGCGCGCGGCCGGUGAAU
U66040.1/1434-1498         CGCAGGGAGUAACCAAAACAAAAAAGAGUGAACCGGCAGCCGCAUCCCGCGCGCGGCCGGUGAAU
CP000036.1/386666-386730   UGCAGGGAGCAACCAAAGCAAAAAAGAGUGAACCGGCAGCCGCUACCCGCGCGCGUCCGGUGCCA
CP000647.1/497602-497666   GUCAGGGAGCAACCACCCCAAAAAAGAGUGAACCGGCAGCCGCUUCCCGCGCGCGGCCGGUGAAU
CP000653.1/1056799-1056863 CGCAGGGAGCAACCAAGCCAAAAAAGAGUGAACCGGCAGCGCCAGGAAGAGCGCGGCCGGUUAAU
#=GC SS_cons               :::::::::::::::::::::::::::::::<<<<<<-<<<<<_____>>>->>->>>>>>::::
#=GC RF                    uGCAGGGAGCAACCAAaaCAAAAAAGAGUGAACCGGcAGCCgCuacccGcGCGCGgCCGGUGAAU
//
