INFERNAL1/a [1.1.5 | Sep 2023] NAME Antizyme_FSE ACC RF00381 DESC Antizyme RNA frameshifting stimulation element STATES 181 NODES 49 CLEN 59 W 74 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 19:10:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00381/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 13 EFFN 2.745361 CKSUM 1148469677 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.20 NC 39.50 EFP7GF -11.1779 0.71923 ECMLC 0.70964 -5.98284 2.78243 1600000 603342 0.001989 ECMGC 0.40847 -18.93336 -4.23819 1600000 161789 0.002472 ECMLI 0.66203 -4.23694 4.38894 1600000 362460 0.003311 ECMGI 0.46793 -13.05488 -1.14207 1600000 105435 0.003794 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 93 -7.249 -7.456 -0.043 -5.870 IL 1 1 2 1 4 1 13 78 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 13 74 93 -8.245 -0.017 -6.900 -2.019 -1.924 -2.775 1.741 D 4 2 3 5 3 0 8 72 92 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 12 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 12 73 92 -8.245 -0.017 -6.900 -2.168 -3.470 1.827 -2.856 D 7 5 3 8 3 0 7 71 91 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 11 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 11 72 91 -8.245 -0.017 -6.900 1.817 -2.942 -2.518 -2.542 D 10 8 3 11 3 0 7 70 90 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 11 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 10 71 90 -8.245 -0.017 -6.900 -2.019 -1.924 -2.775 1.741 D 13 11 3 14 3 0 6 69 89 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 10 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 9 70 89 -8.619 -0.016 -6.937 -2.168 -3.470 1.827 -2.856 D 16 14 3 17 3 0 6 68 88 -5.620 -0.734 -1.403 IL 17 17 3 17 3 1 9 70 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 59 - C - - MR 18 17 3 20 3 1 8 69 88 -8.619 -0.016 -6.937 -1.650 1.509 -2.503 -0.603 D 19 17 3 20 3 0 4 67 86 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 8 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 58 - U - - MR 21 20 3 23 3 1 7 68 87 -8.619 -0.016 -6.937 -1.442 -1.021 -2.186 1.546 D 22 20 3 23 3 0 3 66 85 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 7 68 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 57 - A - - MR 24 23 3 26 3 1 6 67 86 -8.619 -0.016 -6.937 1.817 -2.942 -2.518 -2.542 D 25 23 3 26 3 0 3 65 84 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 6 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 56 - G - - MR 27 26 3 29 3 1 5 66 85 -8.619 -0.016 -6.937 -2.168 -3.470 1.827 -2.856 D 28 26 3 29 3 0 2 64 83 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 5 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 55 - G - - MR 30 29 3 32 3 1 4 65 84 -8.619 -0.078 -4.318 -2.168 -3.470 1.827 -2.856 D 31 29 3 32 3 0 1 63 82 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 4 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 54 - G - - MR 33 32 3 35 3 1 3 64 83 -8.557 -0.087 -4.163 -0.669 -2.335 1.525 -1.760 D 34 32 3 35 3 0 1 62 81 -6.896 -0.907 -1.126 IR 35 35 3 35 3 1 4 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 53 - A - - MR 36 35 3 38 3 1 3 63 82 -8.552 -0.276 -2.546 1.018 -0.157 -1.264 -0.596 D 37 35 3 38 3 0 0 61 80 -6.930 -2.107 -0.396 IR 38 38 3 38 3 1 4 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 52 - G - - MR 39 38 3 41 3 1 4 62 81 -8.296 -0.103 -3.925 0.125 -1.559 1.040 -0.961 D 40 38 3 41 3 0 0 60 79 -7.979 -1.927 -0.448 IR 41 41 3 41 3 1 4 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 51 - A - - MR 42 41 3 44 3 1 5 61 80 -8.298 -0.019 -6.615 1.283 -0.864 -1.230 -0.758 D 43 41 3 44 3 0 0 59 78 -7.974 -3.152 -0.179 IR 44 44 3 44 3 1 4 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 50 - C - - MR 45 44 3 47 3 1 4 60 79 -8.298 -0.019 -6.615 -0.696 1.085 -0.966 -0.415 D 46 44 3 47 3 0 0 58 78 -7.974 -0.665 -1.452 IR 47 47 3 47 3 1 2 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 49 - u - - MR 48 47 3 50 3 1 3 59 78 -8.553 -0.016 -6.871 -0.223 0.123 -0.864 0.589 D 49 47 3 50 3 0 0 57 77 -6.921 -0.885 -1.151 IR 50 50 3 50 3 1 2 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 48 - G - - MR 51 50 3 53 3 1 3 58 77 -8.619 -0.016 -6.937 -1.062 -2.677 1.647 -2.104 D 52 50 3 53 3 0 0 56 75 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 47 - g - - MR 54 53 3 56 3 1 2 57 76 -8.619 -0.016 -6.937 0.527 -1.724 0.851 -1.145 D 55 53 3 56 3 0 0 55 74 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 46 - c - - MR 57 56 3 59 3 1 2 56 75 -8.619 -0.016 -6.937 -1.038 0.940 -1.872 0.401 D 58 56 3 59 3 0 0 54 73 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 45 - A - - MR 60 59 3 62 5 1 1 55 74 -7.342 -0.097 -4.327 -7.369 -8.261 1.207 -1.708 -0.088 -1.172 D 61 59 3 62 5 0 0 53 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 6 44 c g - - MP 63 62 3 67 6 2 2 54 73 -9.198 -9.137 -0.020 -7.913 -8.193 -8.588 -3.010 -3.069 -3.067 0.420 0.500 -3.803 2.280 -2.990 -3.083 0.517 -3.575 -1.269 2.078 -3.260 0.288 -2.076 ML 64 62 3 67 6 1 1 52 72 -6.649 -6.995 -0.870 -1.404 -6.845 -4.374 -0.024 0.412 -0.722 0.111 MR 65 62 3 67 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 7 43 C G - - MP 69 68 6 73 6 2 2 52 71 -9.230 -9.169 -0.019 -7.945 -8.225 -8.620 -5.173 -5.131 -4.753 -1.318 -3.349 -5.082 3.705 -4.221 -4.830 -1.151 -5.017 -3.093 0.093 -5.199 -1.077 -3.651 ML 70 68 6 73 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 8 42 C G - - MP 75 74 6 79 6 2 2 50 69 -9.230 -9.169 -0.019 -7.945 -8.225 -8.620 -5.173 -5.131 -4.753 -1.318 -3.349 -5.082 3.705 -4.221 -4.830 -1.151 -5.017 -3.093 0.093 -5.199 -1.077 -3.651 ML 76 74 6 79 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 9 41 C G - - MP 81 80 6 85 6 2 2 48 67 -9.230 -9.169 -0.019 -7.945 -8.225 -8.620 -5.173 -5.131 -4.753 -1.318 -3.349 -5.082 3.705 -4.221 -4.830 -1.151 -5.017 -3.093 0.093 -5.199 -1.077 -3.651 ML 82 80 6 85 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 10 40 U A - - MP 87 86 6 91 6 2 2 46 65 -9.230 -9.169 -0.019 -7.945 -8.225 -8.620 -4.896 -4.733 -4.653 -0.984 -3.456 -5.150 0.881 -4.196 -4.652 -0.816 -4.990 -2.610 3.582 -5.015 -1.116 -3.392 ML 88 86 6 91 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 11 39 C G - - MP 93 92 6 97 4 2 2 44 63 -7.249 -7.456 -0.043 -5.870 -4.790 -4.814 -4.560 -1.085 -0.930 -5.017 3.629 -4.191 -4.627 -0.935 -4.899 -2.873 0.158 -4.906 -1.125 -3.499 ML 94 92 6 97 4 1 1 44 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 44 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 43 62 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 46 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 12 - A - - - ML 99 98 6 101 3 1 1 41 60 -8.619 -0.016 -6.937 1.383 -1.511 -1.526 -0.527 D 100 98 6 101 3 0 0 40 59 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 38 - C - - MR 102 101 3 104 5 1 1 40 59 -7.342 -0.033 -7.157 -7.369 -8.261 -1.597 1.481 -2.450 -0.526 D 103 101 3 104 5 0 0 39 58 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 13 37 C G - - MP 105 104 3 109 6 2 2 39 58 -9.230 -9.169 -0.019 -7.945 -8.225 -8.620 -5.173 -5.131 -4.753 -1.318 -3.349 -5.082 3.705 -4.221 -4.830 -1.151 -5.017 -3.093 0.093 -5.199 -1.077 -3.651 ML 106 104 3 109 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 14 36 C G - - MP 111 110 6 115 6 2 2 37 56 -9.230 -9.169 -0.019 -7.945 -8.225 -8.620 -5.173 -5.131 -4.753 -1.318 -3.349 -5.082 3.705 -4.221 -4.830 -1.151 -5.017 -3.093 0.093 -5.199 -1.077 -3.651 ML 112 110 6 115 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 15 35 C G - - MP 117 116 6 121 6 2 2 35 54 -9.230 -9.169 -0.019 -7.945 -8.225 -8.620 -5.173 -5.131 -4.753 -1.318 -3.349 -5.082 3.705 -4.221 -4.830 -1.151 -5.017 -3.093 0.093 -5.199 -1.077 -3.651 ML 118 116 6 121 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 16 34 A U - - MP 123 122 6 127 6 2 2 33 52 -9.230 -9.169 -0.019 -7.945 -8.225 -8.620 -0.769 -2.838 -3.460 3.273 -3.732 -4.595 0.137 -3.665 -3.484 0.934 -4.035 -0.572 -0.128 -3.811 -1.625 -2.487 ML 124 122 6 127 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 17 33 C G - - MP 129 128 6 133 6 2 2 31 50 -9.230 -9.169 -0.019 -7.945 -8.225 -8.620 -3.632 -3.640 -3.636 -0.126 -2.860 -4.299 3.302 -3.505 -3.662 0.032 -1.339 -1.797 0.755 -3.855 -0.005 -2.631 ML 130 128 6 133 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 30 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 18 32 c g - - MP 135 134 6 139 4 2 2 29 48 -7.249 -7.456 -0.043 -5.870 -3.899 -3.875 -3.767 -0.116 -2.669 -4.329 2.935 -3.394 -3.774 0.069 -4.161 -1.873 1.463 -4.038 1.318 -2.643 ML 136 134 6 139 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 31 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 19 - c - - - ML 141 140 6 143 3 1 1 27 45 -8.245 -0.017 -6.900 -0.002 0.231 -0.201 -0.062 D 142 140 6 143 3 0 0 26 45 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 20 - c - - - ML 144 143 3 146 3 1 1 25 44 -8.245 -0.017 -6.900 -0.323 0.541 -0.976 0.308 D 145 143 3 146 3 0 0 25 43 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 21 - U - - - ML 147 146 3 149 3 1 1 24 43 -8.245 -0.017 -6.900 -1.072 -0.162 -1.838 1.233 D 148 146 3 149 3 0 0 23 42 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 22 - G - - - ML 150 149 3 152 3 1 1 23 42 -8.245 -0.017 -6.900 -2.168 -3.470 1.827 -2.856 D 151 149 3 152 3 0 0 22 41 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 23 - A - - - ML 153 152 3 155 3 1 1 22 41 -8.245 -0.017 -6.900 1.817 -2.942 -2.518 -2.542 D 154 152 3 155 3 0 0 21 40 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 24 - A - - - ML 156 155 3 158 3 1 1 21 40 -8.245 -0.017 -6.900 1.817 -2.942 -2.518 -2.542 D 157 155 3 158 3 0 0 20 39 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 25 - G - - - ML 159 158 3 161 3 1 1 20 38 -8.245 -0.017 -6.900 -2.168 -3.470 1.827 -2.856 D 160 158 3 161 3 0 0 19 38 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 26 - A - - - ML 162 161 3 164 3 1 1 19 37 -8.245 -0.017 -6.900 1.817 -2.942 -2.518 -2.542 D 163 161 3 164 3 0 0 18 37 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 27 - U - - - ML 165 164 3 167 3 1 1 17 36 -8.245 -0.017 -6.900 -0.851 -0.672 -1.233 1.259 D 166 164 3 167 3 0 0 17 36 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 28 - C - - - ML 168 167 3 170 3 1 1 16 35 -8.245 -0.017 -6.900 -2.431 1.767 -3.261 -1.710 D 169 167 3 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 29 - C - - - ML 171 170 3 173 3 1 1 15 33 -8.245 -0.017 -6.900 -2.431 1.767 -3.261 -1.710 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 30 - C - - - ML 174 173 3 176 3 1 1 13 31 -8.245 -0.017 -6.900 -1.597 1.481 -2.450 -0.526 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 31 - a - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 0.795 -0.291 -0.486 -0.446 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Antizyme_FSE ACC RF00381 DESC Antizyme RNA frameshifting stimulation element LENG 59 MAXL 137 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 19:10:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00381/CM NSEQ 13 EFFN 3.449951 CKSUM 1148469677 STATS LOCAL MSV -7.9977 0.71923 STATS LOCAL VITERBI -8.3639 0.71923 STATS LOCAL FORWARD -3.3804 0.71923 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.48540 1.30315 1.15578 1.67609 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 0.00000 * 1 3.05805 2.94819 3.58983 0.13584 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 2 3.16524 4.09852 0.08816 3.66592 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 3 0.09399 3.70779 3.38883 3.46013 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 4 3.05805 2.94819 3.58983 0.13584 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 5 3.16524 4.09852 0.08816 3.66592 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 6 2.27348 0.87571 2.15130 1.01019 6 c - - < 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 7 3.51967 0.15892 3.42516 2.46767 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 8 3.60034 0.15287 3.47108 2.48462 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 9 3.64161 0.14997 3.49395 2.49288 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 10 3.52099 2.34756 3.34137 0.17502 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 11 3.50226 0.16566 3.33548 2.44260 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 12 0.38139 2.55761 2.58049 1.80875 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 13 3.69397 0.14646 3.52236 2.50298 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 14 3.69406 0.14646 3.52241 2.50300 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 15 3.69255 0.14656 3.52160 2.50271 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 16 0.31737 2.81360 1.95275 2.65826 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 17 2.75602 0.41621 2.26840 1.75195 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 18 2.77238 0.66295 2.55265 1.06629 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 19 1.41153 1.18989 1.51143 1.46369 19 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 20 1.66020 0.96278 2.10553 1.18323 20 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 21 2.28269 1.50105 2.81978 0.48536 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 22 3.16524 4.09852 0.08816 3.66592 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 23 0.09399 3.70779 3.38883 3.46013 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 24 0.09399 3.70779 3.38883 3.46013 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 25 3.16524 4.09852 0.08816 3.66592 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 26 0.09399 3.70779 3.38883 3.46013 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 27 2.10222 1.90624 2.31240 0.46179 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 28 3.40812 0.11637 3.97029 2.84939 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 29 3.40812 0.11637 3.97029 2.84939 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 30 2.71360 0.30173 3.31784 1.84560 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 31 0.80510 1.57641 1.73837 1.76939 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 32 1.69942 2.71987 0.39704 2.53802 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 33 2.17606 2.72960 0.29779 2.54072 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 34 2.36301 2.21759 2.61716 0.32299 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 35 2.78641 3.69079 0.12550 3.46260 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 36 2.78900 3.69486 0.12504 3.46719 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 37 2.79274 3.70078 0.12438 3.47385 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 38 2.71360 0.30173 3.31784 1.84560 38 C - - - 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 39 2.34290 3.50062 0.17827 3.29526 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 40 0.19712 3.54302 2.18509 3.28298 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 41 2.78182 3.68355 0.12632 3.45447 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 42 2.78345 3.68613 0.12602 3.45736 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 43 2.78606 3.69023 0.12556 3.46198 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.08786 4.14574 2.68416 1.46634 0.26236 1.09861 0.40547 44 0.94167 2.33029 0.93392 2.12239 44 g - - > 1.38629 1.38629 1.38629 1.38629 0.03399 4.09187 4.09187 1.46634 0.26236 0.38099 1.14943 45 0.50644 2.73107 1.43098 2.37363 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 46 2.25204 0.67615 2.84881 1.11374 46 C - - : 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 47 1.00544 2.73631 0.74761 2.34541 47 g - - : 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 48 2.24531 3.46116 0.20269 3.07514 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.08677 4.14574 2.69885 1.46634 0.26236 1.09861 0.40547 49 1.57435 1.27290 2.01317 0.96949 49 u - - : 1.38629 1.38629 1.38629 1.38629 0.25199 4.09292 1.57960 1.46634 0.26236 1.83256 0.17436 50 2.01338 0.54399 2.13038 1.78831 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88298 3.88298 1.46634 0.26236 2.86766 0.05851 51 0.44507 2.02502 2.34851 2.02711 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.11585 3.88298 2.42139 1.46634 0.26236 1.42077 0.27645 52 1.32174 2.59302 0.60480 2.18611 52 G - - : 1.38629 1.38629 1.38629 1.38629 0.04211 3.88168 3.88168 1.46634 0.26236 0.35790 1.20111 53 0.63418 1.47776 2.37383 1.90812 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.08847 4.09187 2.68877 1.46634 0.26236 0.38099 1.14943 54 1.94040 3.20004 0.28018 2.81430 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.03385 4.09596 4.09596 1.46634 0.26236 0.39990 1.10985 55 3.16524 4.09852 0.08816 3.66592 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 56 3.16524 4.09852 0.08816 3.66592 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 57 0.09399 3.70779 3.38883 3.46013 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 58 2.57802 2.18398 3.09631 0.26622 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.03218 4.14574 4.14574 1.46634 0.26236 1.09861 0.40547 59 2.75809 0.28306 3.36013 1.90795 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.01622 4.12978 * 1.46634 0.26236 0.00000 * //