INFERNAL1/a [1.1.4 | Dec 2020] NAME HIV_PBS ACC RF00375 DESC HIV primer binding site (PBS) STATES 306 NODES 87 CLEN 99 W 116 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:34:27 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 130 EFFN 1.114807 CKSUM 4085275740 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 83.10 NC 63.90 EFP7GF -5.8311 0.71844 ECMLC 0.66635 -5.71707 2.63475 1600000 313422 0.003829 ECMGC 0.43941 -14.03429 -4.16590 1600000 30568 0.013086 ECMLI 0.64335 -3.38771 4.88763 1600000 246232 0.004873 ECMGI 0.47982 -8.17548 0.80858 1600000 29798 0.013424 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 116 137 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 IL 1 1 2 1 6 9 45 118 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 10 45 118 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 101 C G - - MP 3 2 3 7 6 13 49 117 137 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 -3.606 -3.514 -3.568 0.065 -2.508 -4.200 3.282 -3.411 -3.609 0.396 -3.158 -1.572 0.893 -3.789 -0.507 -2.538 ML 4 2 3 7 6 8 43 115 136 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 8 42 115 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 5 37 112 133 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 9 44 116 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 9 45 116 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 100 u a - - MP 9 8 6 13 6 13 48 115 135 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 -3.391 -3.316 -3.339 0.297 -1.971 -3.972 1.803 -3.127 -3.366 0.610 -3.791 -1.363 2.868 -3.562 -0.190 -2.263 ML 10 8 6 13 6 8 42 113 134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 8 42 113 134 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 4 36 110 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 9 44 114 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 9 44 114 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 99 C G - - MP 15 14 6 19 6 13 46 113 133 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 -3.625 -3.488 -3.529 0.149 -2.594 -4.111 3.191 -3.280 -3.564 0.519 -3.380 -1.488 1.049 -3.773 -0.176 -2.460 ML 16 14 6 19 6 8 41 111 132 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 7 41 111 132 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 4 36 108 129 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 9 43 112 133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 9 43 112 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 98 u a - - MP 21 20 6 25 6 12 45 111 131 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 -3.436 -3.311 -3.356 0.326 -2.457 -3.967 1.843 -3.116 -3.385 0.691 -3.793 -1.310 2.795 -3.590 0.127 -2.270 ML 22 20 6 25 6 7 40 109 130 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 7 40 109 130 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 4 36 106 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 8 42 110 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 8 42 110 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 97 G C - - MP 27 26 6 31 6 11 43 109 129 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 -3.632 -2.256 -3.666 0.856 -3.914 -4.095 0.478 -3.995 -3.631 3.259 -4.019 -0.343 0.153 -3.198 -1.484 -2.642 ML 28 26 6 31 6 7 40 107 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 7 39 107 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 4 35 105 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 8 41 108 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 8 41 108 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 96 G C - - MP 33 32 6 37 6 10 41 107 127 -8.974 -8.913 -0.025 -7.423 -7.970 -8.365 -4.071 -2.780 -4.131 0.626 -4.288 -4.411 0.190 -4.308 -3.855 3.424 -4.245 -0.465 -0.218 -4.019 -1.816 -3.019 ML 34 32 6 37 6 7 39 106 126 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 6 37 105 126 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 3 35 103 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 7 40 106 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 7 39 106 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 95 u a - - MP 39 38 6 43 4 8 39 105 125 -6.564 -6.771 -0.070 -5.185 -3.447 -3.312 -3.359 0.330 -2.448 -3.964 1.870 -3.110 -3.389 0.702 -3.792 -1.302 2.791 -3.598 0.033 -2.271 ML 40 38 6 43 4 6 37 104 125 -3.771 -3.953 -0.501 -2.683 0.343 -0.378 -0.220 0.142 MR 41 38 6 43 4 4 36 104 125 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 3 34 103 124 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 7 39 106 127 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 7 38 105 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 45 44 6 47 3 7 37 102 123 -7.615 -0.026 -6.270 1.517 -1.687 -1.387 -1.170 D 46 44 6 47 3 3 34 101 121 -6.174 -1.687 -0.566 IL 47 47 3 47 3 6 37 104 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - a - - - ML 48 47 3 50 3 6 37 101 122 -8.031 -0.023 -6.349 0.836 -0.962 -0.171 -0.297 D 49 47 3 50 3 3 33 100 120 -5.620 -0.734 -1.403 IL 50 50 3 50 3 5 36 102 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 94 - A - - MR 51 50 3 53 3 6 36 100 121 -8.031 -0.023 -6.349 1.019 -1.155 -0.218 -0.588 D 52 50 3 53 3 2 31 98 119 -6.390 -1.568 -0.620 IR 53 53 3 53 3 5 35 101 121 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 93 - a - - MR 54 53 3 56 3 5 35 99 120 -8.031 -0.023 -6.349 0.877 -1.085 -0.030 -0.490 D 55 53 3 56 3 1 30 97 118 -6.390 -1.568 -0.620 IR 56 56 3 56 3 4 34 100 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 92 - a - - MR 57 56 3 59 3 5 34 98 119 -8.031 -0.023 -6.349 0.766 -1.058 0.120 -0.448 D 58 56 3 59 3 1 30 96 117 -6.390 -1.568 -0.620 IR 59 59 3 59 3 4 34 99 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 91 - u - - MR 60 59 3 62 3 5 33 97 118 -8.031 -0.023 -6.349 0.195 -0.638 -0.539 0.608 D 61 59 3 62 3 1 29 95 116 -6.390 -1.568 -0.620 IR 62 62 3 62 3 4 33 98 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 90 - G - - MR 63 62 3 65 3 4 32 96 117 -8.031 -0.023 -6.349 -0.614 -1.772 1.382 -1.159 D 64 62 3 65 3 1 28 94 115 -6.390 -1.568 -0.620 IR 65 65 3 65 3 3 32 97 117 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 89 - A - - MR 66 65 3 68 3 4 32 95 116 -8.031 -0.023 -6.349 1.517 -1.687 -1.387 -1.170 D 67 65 3 68 3 0 27 93 114 -6.390 -1.568 -0.620 IR 68 68 3 68 3 3 31 96 116 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 88 - A - - MR 69 68 3 71 3 4 31 94 115 -8.031 -0.023 -6.349 1.517 -1.687 -1.387 -1.170 D 70 68 3 71 3 0 26 92 113 -6.390 -1.568 -0.620 IR 71 71 3 71 3 3 30 95 115 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 87 - A - - MR 72 71 3 74 3 3 30 93 114 -8.031 -0.023 -6.349 1.517 -1.687 -1.387 -1.170 D 73 71 3 74 3 0 26 91 112 -6.390 -1.568 -0.620 IR 74 74 3 74 3 2 29 94 114 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 86 - G - - MR 75 74 3 77 3 3 29 92 113 -8.031 -0.023 -6.349 -0.714 -1.842 1.425 -1.229 D 76 74 3 77 3 0 25 90 111 -6.390 -1.568 -0.620 IR 77 77 3 77 3 2 29 93 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 85 - c - - MR 78 77 3 80 3 3 28 91 112 -8.031 -0.023 -6.349 -0.465 0.886 -1.283 0.023 D 79 77 3 80 3 0 24 89 110 -6.390 -1.568 -0.620 IR 80 80 3 80 3 2 28 92 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 84 - G - - MR 81 80 3 83 3 2 27 90 111 -8.031 -0.023 -6.349 -0.341 -1.581 1.242 -0.970 D 82 80 3 83 3 0 23 88 109 -6.390 -1.568 -0.620 IR 83 83 3 83 3 2 27 91 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 83 - A - - MR 84 83 3 86 3 2 26 89 110 -8.031 -0.023 -6.349 1.460 -1.581 -1.199 -1.064 D 85 83 3 86 3 0 23 87 108 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 26 90 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 82 - A - - MR 87 86 3 89 3 2 25 88 109 -8.031 -0.023 -6.349 1.480 -1.616 -1.258 -1.100 D 88 86 3 89 3 0 22 86 107 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 25 89 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 81 - A - - MR 90 89 3 92 3 2 25 87 108 -8.031 -0.023 -6.349 1.517 -1.687 -1.387 -1.170 D 91 89 3 92 3 0 21 85 106 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 24 88 108 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 80 - G - - MR 93 92 3 95 3 1 24 86 107 -8.031 -0.023 -6.349 -0.603 -1.669 1.340 -1.012 D 94 92 3 95 3 0 21 84 105 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 24 87 107 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 79 - u - - MR 96 95 3 98 3 1 23 85 106 -8.031 -0.023 -6.349 -0.276 -0.372 -0.843 0.883 D 97 95 3 98 3 0 20 83 104 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 23 86 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 78 - u - - MR 99 98 3 101 3 1 22 84 105 -8.031 -0.023 -6.349 -0.272 -0.025 -0.909 0.728 D 100 98 3 101 3 0 19 82 103 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 22 85 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 77 - C - - MR 102 101 3 104 3 1 21 83 104 -8.031 -0.023 -6.349 -0.945 1.312 -1.726 -0.526 D 103 101 3 104 3 0 19 82 102 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 21 84 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 76 - A - - MR 105 104 3 107 2 1 20 82 103 -7.927 -0.006 1.364 -1.414 -0.987 -0.870 D 106 104 3 107 2 0 19 81 102 -4.432 -0.068 IR 107 107 3 107 2 1 20 83 104 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 29 ] - - - - - - B 108 107 3 109 246 0 19 81 102 [ BEGL 30 ] - - - - - - S 109 108 1 110 4 0 2 61 81 -0.051 -6.654 -6.062 -6.702 [ MATP 31 ] 10 56 C G - - MP 110 109 1 114 6 2 6 61 81 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 -3.888 -3.720 -3.681 -0.026 -2.566 -4.177 3.275 -3.306 -3.716 0.343 -4.040 -1.660 1.003 -3.995 -0.265 -2.582 ML 111 109 1 114 6 1 1 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 1 114 6 1 1 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 1 114 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 2 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 11 55 u a - - MP 116 115 6 120 6 2 5 59 79 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 -3.560 -3.346 -3.461 0.305 -2.553 -4.078 1.756 -3.198 -3.475 0.689 -3.876 -1.260 2.901 -3.728 -0.245 -2.352 ML 117 115 6 120 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 12 54 a u - - MP 122 121 6 126 6 2 5 57 77 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 -3.296 -2.466 -3.341 2.862 -3.435 -4.469 0.840 -3.407 -3.261 1.627 -3.782 -0.036 0.415 -3.738 -1.107 -2.211 ML 123 121 6 126 6 1 1 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 13 53 G C - - MP 128 127 6 132 6 2 5 55 75 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 -4.023 -2.638 -4.091 0.666 -4.330 -4.394 0.152 -4.306 -3.833 3.417 -4.228 -0.431 -0.219 -3.973 -1.850 -2.986 ML 129 127 6 132 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 14 52 a u - - MP 134 133 6 138 6 2 4 53 73 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 -2.799 -2.437 -3.216 2.810 -3.324 -4.288 0.892 -3.340 -3.190 1.620 -3.711 -0.077 0.522 -3.535 -1.033 -2.135 ML 135 133 6 138 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 15 51 G C - - MP 140 139 6 144 6 2 4 51 71 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 -4.017 -2.750 -4.078 0.705 -4.261 -4.399 0.215 -4.266 -3.823 3.400 -4.219 -0.431 -0.181 -3.982 -1.789 -2.967 ML 141 139 6 144 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 16 50 a u - - MP 146 145 6 150 6 2 3 49 69 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 -3.296 -2.466 -3.341 2.862 -3.435 -4.469 0.840 -3.407 -3.261 1.627 -3.782 -0.036 0.415 -3.738 -1.107 -2.211 ML 147 145 6 150 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 17 49 u a - - MP 152 151 6 156 4 2 2 47 67 -6.568 -6.775 -0.070 -5.189 -2.634 -2.940 -3.141 0.602 -2.589 -3.903 1.631 -3.111 -3.164 0.982 -3.655 -0.964 2.763 -3.310 -0.303 -1.989 ML 153 151 6 156 4 1 1 47 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 4 1 1 47 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 155 151 6 156 4 0 0 46 66 -4.568 -4.250 -2.265 -0.520 IL 156 156 5 156 4 1 1 49 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 157 157 6 157 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 18 - C - - - ML 158 157 6 160 3 1 1 45 65 -7.615 -0.026 -6.270 -0.876 1.256 -1.658 -0.416 D 159 157 6 160 3 0 0 43 63 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 19 - C - - - ML 161 160 3 163 3 1 1 44 63 -7.615 -0.026 -6.270 -0.945 1.312 -1.726 -0.526 D 162 160 3 163 3 0 0 42 62 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 20 - C - - - ML 164 163 3 166 3 1 1 43 62 -7.615 -0.026 -6.270 -0.945 1.312 -1.726 -0.526 D 165 163 3 166 3 0 0 41 61 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 21 - U - - - ML 167 166 3 169 3 1 1 42 61 -7.615 -0.026 -6.270 -0.875 -0.987 -1.567 1.386 D 168 166 3 169 3 0 0 40 60 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 22 - C - - - ML 170 169 3 172 3 1 1 40 60 -7.615 -0.026 -6.270 -0.629 1.074 -1.436 -0.187 D 171 169 3 172 3 0 0 39 59 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 23 - A - - - ML 173 172 3 175 3 1 1 39 59 -7.615 -0.026 -6.270 1.517 -1.687 -1.387 -1.170 D 174 172 3 175 3 0 0 38 58 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 24 - G - - - ML 176 175 3 178 3 1 1 38 58 -7.615 -0.026 -6.270 -0.789 -1.844 1.438 -1.205 D 177 175 3 178 3 0 0 37 57 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 25 - A - - - ML 179 178 3 181 3 1 1 37 57 -7.615 -0.026 -6.270 1.517 -1.687 -1.387 -1.170 D 180 178 3 181 3 0 0 36 56 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 26 - C - - - ML 182 181 3 184 3 1 1 36 56 -7.615 -0.026 -6.270 -0.683 1.049 -1.458 -0.082 D 183 181 3 184 3 0 0 35 54 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 27 - c - - - ML 185 184 3 187 3 1 1 35 55 -7.615 -0.030 -6.003 -0.201 0.784 -1.157 -0.059 D 186 184 3 187 3 0 0 34 53 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 28 - c - - - ML 188 187 3 190 3 1 1 34 53 -7.612 -0.026 -6.266 -0.009 0.412 -0.953 0.214 D 189 187 3 190 3 0 0 33 52 -6.201 -1.628 -0.593 IL 190 190 3 190 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 29 - u - - - ML 191 190 3 193 3 1 1 33 52 -7.615 -0.026 -6.270 -0.205 -0.140 -0.976 0.779 D 192 190 3 193 3 0 0 32 51 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 30 - U - - - ML 194 193 3 196 3 1 1 32 51 -7.615 -0.026 -6.270 -0.440 -0.664 -1.161 1.127 D 195 193 3 196 3 0 0 31 50 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 31 - u - - - ML 197 196 3 199 3 1 1 31 50 -7.615 -0.026 -6.270 -0.310 -0.579 -0.782 0.958 D 198 196 3 199 3 0 0 29 49 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 32 - U - - - ML 200 199 3 202 3 1 1 30 49 -7.615 -0.026 -6.270 -0.308 -0.679 -0.878 1.017 D 201 199 3 202 3 0 0 28 48 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 33 - a - - - ML 203 202 3 205 3 1 1 29 48 -7.615 -0.026 -6.270 0.960 -0.867 -0.835 -0.081 D 204 202 3 205 3 0 0 27 47 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 34 - G - - - ML 206 205 3 208 3 1 1 27 47 -7.615 -0.026 -6.270 -0.633 -1.653 1.353 -1.052 D 207 205 3 208 3 0 0 26 46 -6.174 -1.687 -0.566 IL 208 208 3 208 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 35 - u - - - ML 209 208 3 211 3 1 1 26 45 -7.615 -0.026 -6.270 -0.326 -0.640 -0.624 0.935 D 210 208 3 211 3 0 0 25 44 -6.174 -1.687 -0.566 IL 211 211 3 211 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 36 - c - - - ML 212 211 3 214 3 1 1 25 44 -7.615 -0.026 -6.270 -0.602 0.926 -1.373 0.077 D 213 211 3 214 3 0 0 24 43 -6.174 -1.687 -0.566 IL 214 214 3 214 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 37 - a - - - ML 215 214 3 217 3 1 1 24 43 -7.615 -0.026 -6.270 0.971 -0.697 -0.852 -0.204 D 216 214 3 217 3 0 0 23 42 -6.174 -1.687 -0.566 IL 217 217 3 217 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 38 - G - - - ML 218 217 3 220 3 1 1 23 42 -7.615 -0.026 -6.270 -0.617 -1.682 1.348 -1.026 D 219 217 3 220 3 0 0 22 41 -6.174 -1.687 -0.566 IL 220 220 3 220 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 39 - U - - - ML 221 220 3 223 3 1 1 22 41 -7.615 -0.026 -6.270 -0.386 -0.616 -1.051 1.070 D 222 220 3 223 3 0 0 21 40 -6.174 -1.687 -0.566 IL 223 223 3 223 3 1 1 24 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 40 - G - - - ML 224 223 3 226 3 1 1 21 40 -7.615 -0.026 -6.270 -0.749 -1.867 1.439 -1.253 D 225 223 3 226 3 0 0 20 39 -6.174 -1.687 -0.566 IL 226 226 3 226 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 41 - U - - - ML 227 226 3 229 3 1 1 20 38 -7.615 -0.026 -6.270 -0.410 -0.602 -1.054 1.075 D 228 226 3 229 3 0 0 18 37 -6.174 -1.687 -0.566 IL 229 229 3 229 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 42 - G - - - ML 230 229 3 232 3 1 1 18 37 -7.615 -0.026 -6.270 -0.290 -1.547 1.212 -0.936 D 231 229 3 232 3 0 0 17 36 -6.174 -1.687 -0.566 IL 232 232 3 232 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 43 - G - - - ML 233 232 3 235 3 1 1 17 36 -6.022 -0.041 -6.270 -0.256 -1.525 1.192 -0.914 D 234 232 3 235 3 0 0 16 35 -6.174 -1.687 -0.566 IL 235 235 3 235 3 1 1 20 39 -1.423 -0.805 -4.195 0.000 0.000 0.000 0.000 [ MATL 65 ] 46 - A - - - ML 236 235 3 238 3 1 1 15 34 -7.615 -0.026 -6.270 1.465 -1.524 -1.303 -1.041 D 237 235 3 238 3 0 0 15 33 -6.174 -1.687 -0.566 IL 238 238 3 238 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 47 - A - - - ML 239 238 3 241 3 1 1 13 32 -7.615 -0.026 -6.270 1.517 -1.687 -1.387 -1.170 D 240 238 3 241 3 0 0 13 32 -6.174 -1.687 -0.566 IL 241 241 3 241 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 48 - A - - - ML 242 241 3 244 2 1 1 1 1 * 0.000 1.517 -1.687 -1.387 -1.170 D 243 241 3 244 2 0 0 0 0 * 0.000 IL 244 244 3 244 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 68 ] - - - - - - E 245 244 3 -1 0 0 0 0 0 [ BEGR 69 ] - - - - - - S 246 108 1 247 3 0 0 34 53 -7.615 -0.026 -6.270 IL 247 247 2 247 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 57 - C - - - ML 248 247 2 250 3 1 1 34 53 -7.615 -0.026 -6.270 -0.738 1.211 -1.559 -0.422 D 249 247 2 250 3 0 0 32 52 -6.174 -1.687 -0.566 IL 250 250 3 250 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 58 - A - - - ML 251 250 3 253 3 1 1 33 52 -7.615 -0.026 -6.270 1.517 -1.687 -1.387 -1.170 D 252 250 3 253 3 0 0 31 51 -6.174 -1.687 -0.566 IL 253 253 3 253 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 59 - G - - - ML 254 253 3 256 3 1 1 32 51 -7.615 -0.026 -6.270 -0.846 -1.933 1.475 -1.318 D 255 253 3 256 3 0 0 30 50 -6.174 -1.687 -0.566 IL 256 256 3 256 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 60 - U - - - ML 257 256 3 259 3 1 1 31 50 -7.615 -0.026 -6.270 -0.875 -0.987 -1.567 1.386 D 258 256 3 259 3 0 0 29 48 -6.174 -1.687 -0.566 IL 259 259 3 259 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 61 - G - - - ML 260 259 3 262 3 1 1 29 48 -7.615 -0.026 -6.270 -0.846 -1.933 1.475 -1.318 D 261 259 3 262 3 0 0 28 47 -6.174 -1.687 -0.566 IL 262 262 3 262 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 75 ] 62 - G - - - ML 263 262 3 265 3 1 1 28 47 -7.615 -0.026 -6.270 -0.634 -1.758 1.384 -1.154 D 264 262 3 265 3 0 0 27 46 -6.174 -1.687 -0.566 IL 265 265 3 265 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 76 ] 63 - C - - - ML 266 265 3 268 3 1 1 27 46 -7.615 -0.026 -6.270 -0.945 1.312 -1.726 -0.526 D 267 265 3 268 3 0 0 26 45 -6.174 -1.687 -0.566 IL 268 268 3 268 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 77 ] 64 - G - - - ML 269 268 3 271 5 1 1 26 45 -6.794 -0.048 -6.609 -6.822 -7.713 -0.846 -1.933 1.475 -1.318 D 270 268 3 271 5 0 0 25 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 271 271 3 271 5 1 1 26 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 78 ] 65 75 C G - - MP 272 271 3 276 6 2 2 25 44 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 -3.888 -3.720 -3.681 -0.026 -2.566 -4.177 3.275 -3.306 -3.716 0.343 -4.040 -1.660 1.003 -3.995 -0.265 -2.582 ML 273 271 3 276 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 274 271 3 276 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 275 271 3 276 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 276 276 5 276 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 277 277 6 277 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 79 ] 66 74 C G - - MP 278 277 6 282 6 2 2 23 42 -8.974 -8.913 -0.023 -7.690 -7.970 -8.365 -3.888 -3.720 -3.681 -0.026 -2.566 -4.177 3.275 -3.306 -3.716 0.343 -4.040 -1.660 1.003 -3.995 -0.265 -2.582 ML 279 277 6 282 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 280 277 6 282 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 281 277 6 282 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 282 282 5 282 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 283 283 6 283 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 80 ] 67 73 C G - - MP 284 283 6 288 4 2 2 21 40 -6.568 -6.775 -0.070 -5.189 -3.769 -3.695 -3.610 -0.015 -2.132 -4.131 3.251 -3.277 -3.652 0.294 -3.998 -1.719 1.057 -3.887 -0.192 -2.529 ML 285 283 6 288 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 286 283 6 288 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 287 283 6 288 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 288 288 5 288 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 289 289 6 289 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 81 ] 68 - G - - - ML 290 289 6 292 3 1 1 18 36 -7.615 -0.026 -6.270 -0.564 -1.736 1.359 -1.124 D 291 289 6 292 3 0 0 17 36 -6.174 -1.687 -0.566 IL 292 292 3 292 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 82 ] 69 - A - - - ML 293 292 3 295 3 1 1 16 35 -7.615 -0.026 -6.270 1.474 -1.605 -1.239 -1.088 D 294 292 3 295 3 0 0 16 35 -6.174 -1.687 -0.566 IL 295 295 3 295 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 83 ] 70 - A - - - ML 296 295 3 298 3 1 1 15 34 -7.615 -0.026 -6.270 1.331 -1.210 -1.086 -0.784 D 297 295 3 298 3 0 0 15 33 -6.174 -1.687 -0.566 IL 298 298 3 298 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 84 ] 71 - C - - - ML 299 298 3 301 3 1 1 13 32 -7.615 -0.026 -6.270 -0.549 1.023 -1.139 -0.269 D 300 298 3 301 3 0 0 13 32 -6.174 -1.687 -0.566 IL 301 301 3 301 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 85 ] 72 - A - - - ML 302 301 3 304 2 1 1 1 1 * 0.000 1.389 -1.409 -1.216 -0.800 D 303 301 3 304 2 0 0 0 0 * 0.000 IL 304 304 3 304 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 86 ] - - - - - - E 305 304 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME HIV_PBS ACC RF00375 DESC HIV primer binding site (PBS) LENG 99 MAXL 198 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:34:27 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 130 EFFN 1.535339 CKSUM 4085275740 STATS LOCAL MSV -8.7096 0.71844 STATS LOCAL VITERBI -10.3292 0.71844 STATS LOCAL FORWARD -3.0543 0.71844 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.25336 1.47086 1.31235 1.53461 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 0.00000 * 1 2.76595 0.33933 2.45012 1.97652 1 C - - ( 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 2 2.52246 1.53831 2.25483 0.51065 2 U - - ( 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 3 2.62839 0.42585 2.30943 1.74139 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 4 2.48530 1.50898 2.19192 0.53809 4 U - - ( 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 5 2.04625 2.48882 0.36516 2.36779 5 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 6 2.31667 2.78807 0.25465 2.73848 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 7 2.47582 1.48054 2.18216 0.55235 7 U - - ( 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 8 0.24901 2.81078 2.57772 2.47314 8 A - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 9 0.76802 2.12305 1.49695 1.64720 9 a - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 10 2.78627 0.36949 2.49625 1.80259 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 11 2.54348 1.59684 2.23387 0.49142 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 12 0.56380 2.29628 1.49344 2.24687 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 13 2.27304 2.80560 0.25956 2.73120 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 14 0.58795 2.24848 1.49379 2.16757 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 15 2.24473 2.75889 0.26999 2.69871 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 16 0.56422 2.29541 1.49347 2.24541 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 17 2.25169 1.67781 1.97998 0.56225 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 18 2.25281 0.38605 2.81239 1.86370 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 19 2.33223 0.34336 2.89235 1.97982 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 20 2.33223 0.34336 2.89235 1.97982 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 21 2.21771 2.25096 2.71472 0.32903 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 22 1.99465 0.52362 2.57911 1.63105 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 23 0.24901 2.81078 2.57772 2.47314 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 24 2.18561 2.96228 0.28149 2.51043 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 25 0.24901 2.81078 2.57772 2.47314 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 26 2.04077 0.54367 2.59648 1.53748 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 27 1.60524 0.73973 2.31961 1.49788 27 c - - _ 1.38629 1.38629 1.38629 1.38629 0.05245 3.73472 3.60393 1.46634 0.26236 1.09861 0.40547 28 1.42714 1.03137 2.12523 1.25850 28 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04911 3.73137 3.73137 1.46634 0.26236 1.01335 0.45099 29 1.58848 1.47550 2.14237 0.79913 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 30 1.80769 1.93569 2.32430 0.52123 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 31 1.69161 1.85407 1.99583 0.64764 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 32 1.69623 1.94570 2.08874 0.59803 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 33 0.67117 2.04785 2.03526 1.47301 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 34 2.02312 2.76280 0.34308 2.35326 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 35 1.70469 1.90425 1.86771 0.66405 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 36 1.95630 0.63723 2.50842 1.39245 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 37 0.65954 1.90476 2.05238 1.58172 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 38 2.00926 2.79555 0.34608 2.32920 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 39 1.76432 1.89505 2.23264 0.56012 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 40 2.14787 2.98382 0.28059 2.55967 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 41 1.78480 1.88322 2.23381 0.55696 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 42 1.70464 2.66090 0.44313 2.24191 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 43 1.67356 2.63928 0.45815 2.22047 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.06273 3.29894 3.73472 1.16983 0.37167 1.09861 0.40547 44 0.28880 2.64343 2.48416 2.34002 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 45 0.24901 2.81078 2.57772 2.47314 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 46 0.24901 2.81078 2.57772 2.47314 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 47 0.63150 2.14602 1.50268 2.05005 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 48 2.47645 1.74067 2.11164 0.47882 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 49 2.91739 0.31504 2.58604 1.96007 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 50 2.36821 1.72112 2.06376 0.50998 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 51 2.94533 0.30298 2.63126 1.98915 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 52 2.47565 1.74064 2.11142 0.47898 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 53 0.56173 2.40640 1.43349 2.29100 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 54 2.06962 2.65335 0.32373 2.52693 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 55 2.11980 0.41683 2.71938 1.86498 57 C - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 56 0.24901 2.81078 2.57772 2.47314 58 A - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 57 2.24746 3.05400 0.25500 2.62763 59 G - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 58 2.21771 2.25096 2.71472 0.32903 60 U - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 59 2.24746 3.05400 0.25500 2.62763 61 G - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 60 2.03001 2.86953 0.31988 2.45686 62 G - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 61 2.33223 0.34336 2.89235 1.97982 63 C - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 62 2.24746 3.05400 0.25500 2.62763 64 G - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 63 2.77751 0.37100 2.49281 1.80130 65 C - - < 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 64 2.77849 0.37083 2.49320 1.80145 66 C - - < 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 65 2.74317 0.38521 2.48864 1.75850 67 C - - < 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 66 1.96430 2.84844 0.33755 2.42709 68 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 67 0.28139 2.72431 2.43305 2.38702 69 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 68 0.38937 2.34560 2.27120 2.09121 70 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 69 1.95176 0.54183 2.33685 1.71669 71 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 70 0.34537 2.53252 2.39759 2.10665 72 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 71 2.00567 2.64692 0.33782 2.51041 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 72 2.07252 2.65655 0.32243 2.53128 74 G - - > 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 73 2.07054 2.65436 0.32332 2.52830 75 G - - > 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 74 0.36510 2.53103 2.19143 2.16684 76 A - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 75 2.33223 0.34336 2.89235 1.97982 77 C - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 76 1.64528 1.38183 2.08314 0.84076 78 u - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 77 1.65481 1.67277 2.03449 0.71254 79 u - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 78 1.99533 2.78252 0.35182 2.31524 80 G - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 79 0.24901 2.81078 2.57772 2.47314 81 A - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 80 0.27670 2.73622 2.45197 2.39936 82 A - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 81 0.29124 2.70010 2.39462 2.36174 83 A - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 82 1.75188 2.69418 0.42137 2.27488 84 G - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 83 1.83194 0.66716 2.42546 1.43424 85 C - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 84 2.11270 2.95810 0.29052 2.53458 86 G - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 85 0.24901 2.81078 2.57772 2.47314 87 A - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 86 0.24901 2.81078 2.57772 2.47314 88 A - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 87 0.24901 2.81078 2.57772 2.47314 89 A - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 88 2.01328 2.88466 0.32107 2.46267 90 G - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 89 1.25833 1.87887 1.78249 0.92914 91 u - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 90 0.81811 2.20873 1.27022 1.78305 92 a - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 91 0.73191 2.23265 1.38707 1.82039 93 a - - , 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 92 0.62290 2.29732 1.53699 1.91015 94 A - - , 1.38629 1.38629 1.38629 1.38629 0.05265 3.73472 3.59693 1.46634 0.26236 1.09861 0.40547 93 0.65136 2.34498 1.28473 2.24345 95 A - - ) 1.38629 1.38629 1.38629 1.38629 0.04912 3.73118 3.73118 1.46634 0.26236 1.00889 0.45354 94 2.96009 0.29716 2.61742 2.02289 96 C - - ) 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 95 2.62373 0.41078 2.31010 1.80132 97 C - - ) 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 96 0.64593 2.35478 1.28895 2.25049 98 A - - ) 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 97 2.03362 2.49550 0.36292 2.39642 99 G - - ) 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 98 0.57389 2.41878 1.40054 2.29087 100 A - - ) 1.38629 1.38629 1.38629 1.38629 0.04894 3.73472 3.73472 1.46634 0.26236 1.09861 0.40547 99 2.21137 2.65412 0.29941 2.54045 101 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02477 3.71055 * 1.46634 0.26236 0.00000 * //