INFERNAL1/a [1.1.4 | Dec 2020] NAME Gammaretro_CES ACC RF00374 DESC Gammaretrovirus core encapsidation signal STATES 317 NODES 79 CLEN 101 W 119 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:34:23 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 22 EFFN 0.738525 CKSUM 3448569808 NULL 0.000 0.000 0.000 0.000 GA 51.00 TC 51.00 NC 50.90 EFP7GF -5.4112 0.71870 ECMLC 0.61720 -9.12853 0.52446 1600000 464124 0.002586 ECMGC 0.37398 -15.69022 -4.59440 1600000 25364 0.015770 ECMLI 0.50921 -8.73624 2.11285 1600000 300894 0.003988 ECMGI 0.42153 -9.59132 0.23596 1600000 25185 0.015882 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 119 140 -6.352 -6.559 -0.081 -4.973 IL 1 1 2 1 4 14 49 122 144 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 14 48 122 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 13 47 119 140 -7.421 -0.030 -6.075 0.048 -0.959 0.690 -0.254 D 4 2 3 5 3 11 45 117 138 -6.174 -1.687 -0.566 IL 5 5 3 5 3 13 47 121 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 12 46 118 139 -7.854 -0.026 -6.171 -0.464 -0.544 -1.148 1.096 D 7 5 3 8 3 10 45 117 138 -5.620 -0.734 -1.403 IL 8 8 3 8 3 12 46 119 140 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 103 - C - - MR 9 8 3 11 3 11 45 117 138 -7.854 -0.115 -3.790 -0.565 1.051 -1.315 -0.234 D 10 8 3 11 3 10 44 116 136 -6.390 -1.568 -0.620 IR 11 11 3 11 3 12 46 118 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 102 - a - - MR 12 11 3 14 2 10 44 116 137 -7.546 -0.008 0.870 -0.723 -0.467 -0.247 D 13 11 3 14 2 9 43 115 136 -4.875 -0.050 IR 14 14 3 14 2 11 45 117 138 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 5 ] - - - - - - B 15 14 3 16 96 9 43 115 136 [ BEGL 6 ] - - - - - - S 16 15 1 17 4 0 0 42 61 -0.054 -6.563 -5.971 -6.611 [ MATP 7 ] 3 28 c g - - MP 17 16 1 21 4 2 2 42 61 -6.352 -6.559 -0.081 -4.973 -3.484 -3.317 -3.333 0.329 -2.322 -3.865 2.991 -3.026 -3.375 0.758 -3.729 -1.300 1.278 -3.596 0.171 -2.253 ML 18 16 1 21 4 1 1 42 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 19 16 1 21 4 1 1 41 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 20 16 1 21 4 0 0 40 60 -4.568 -4.250 -2.265 -0.520 IL 21 21 5 21 4 1 1 43 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 22 22 6 22 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 4 - u - - - ML 23 22 6 25 3 1 1 39 58 -7.854 -0.026 -6.171 -0.259 -0.582 -0.724 0.919 D 24 22 6 25 3 0 0 38 57 -5.620 -0.734 -1.403 IL 25 25 3 25 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 27 - u - - MR 26 25 3 28 5 1 1 38 57 -6.631 -0.054 -6.447 -6.659 -7.551 -0.299 -0.595 -0.827 0.972 D 27 25 3 28 5 0 0 37 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 28 28 3 28 5 1 1 38 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 5 26 G C - - MP 29 28 3 33 4 2 2 37 56 -6.352 -6.559 -0.081 -4.973 -3.615 -2.536 -3.686 0.933 -3.842 -4.227 0.566 -3.868 -3.516 3.204 -3.951 -0.071 0.201 -3.700 -1.423 -2.583 ML 30 28 3 33 4 1 1 37 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 31 28 3 33 4 1 1 37 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 32 28 3 33 4 0 0 36 55 -4.568 -4.250 -2.265 -0.520 IL 33 33 5 33 4 1 1 39 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 34 34 6 34 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 6 - U - - - ML 35 34 6 37 3 1 1 34 53 -7.421 -0.030 -6.075 -0.306 -0.643 -1.038 1.045 D 36 34 6 37 3 0 0 33 52 -6.174 -1.687 -0.566 IL 37 37 3 37 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 7 - A - - - ML 38 37 3 40 3 1 1 33 52 -7.854 -0.026 -6.171 1.349 -1.332 -1.062 -0.793 D 39 37 3 40 3 0 0 32 51 -5.620 -0.734 -1.403 IL 40 40 3 40 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 25 - U - - MR 41 40 3 43 3 1 1 32 51 -7.854 -0.026 -6.171 -0.464 -0.544 -1.148 1.096 D 42 40 3 43 3 0 0 31 49 -6.390 -1.568 -0.620 IR 43 43 3 43 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 24 - a - - MR 44 43 3 46 5 1 1 31 50 -6.631 -0.054 -6.447 -6.659 -7.551 0.426 0.046 -0.659 -0.014 D 45 43 3 46 5 0 0 30 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 46 46 3 46 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 8 23 C G - - MP 47 46 3 51 6 2 2 30 49 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.588 -3.364 -3.423 0.288 -2.405 -3.954 3.070 -3.104 -3.456 0.758 -3.803 -1.294 1.183 -3.708 -0.103 -2.334 ML 48 46 3 51 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 3 51 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 3 51 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 9 22 u a - - MP 53 52 6 57 6 2 2 28 47 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.107 -2.878 -3.103 0.704 -2.443 -3.813 1.823 -2.998 -3.129 1.132 -3.580 -0.827 2.536 -3.304 -0.160 -1.578 ML 54 52 6 57 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 10 21 a u - - MP 59 58 6 63 6 2 2 26 45 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -2.132 -2.270 -2.896 2.389 -2.901 -3.834 1.223 -3.064 -2.913 1.804 -3.424 -0.050 0.875 -3.110 -0.671 -1.879 ML 60 58 6 63 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 20 G C - - MP 65 64 6 69 6 2 2 24 43 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.720 -2.619 -3.774 0.838 -3.792 -4.242 0.616 -3.900 -3.579 3.243 -3.998 -0.305 0.188 -3.778 -1.379 -2.666 ML 66 64 6 69 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 19 u a - - MP 71 70 6 75 6 2 2 22 41 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.324 -3.067 -3.243 0.558 -2.402 -3.873 1.898 -3.021 -3.262 1.035 -3.668 -0.974 2.610 -3.492 -0.099 -2.153 ML 72 70 6 75 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 13 18 u a - - MP 77 76 6 81 4 2 2 20 39 -6.352 -6.559 -0.081 -4.973 -3.066 -2.943 -3.025 0.636 -2.224 -3.663 2.041 -2.852 -3.061 1.033 -3.486 -0.983 2.182 -3.233 0.901 -1.980 ML 78 76 6 81 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 80 76 6 81 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 81 81 5 81 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 82 82 6 82 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 14 - a - - - ML 83 82 6 85 3 1 1 17 35 -7.421 -0.030 -6.075 0.684 -0.963 0.148 -0.373 D 84 82 6 85 3 0 0 16 35 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 15 - G - - - ML 86 85 3 88 3 1 1 15 34 -7.421 -0.030 -6.075 -0.469 -1.472 1.244 -0.867 D 87 85 3 88 3 0 0 15 33 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 16 - C - - - ML 89 88 3 91 3 1 1 13 32 -7.421 -0.030 -6.075 -0.565 1.051 -1.315 -0.234 D 90 88 3 91 3 0 0 13 32 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 17 - u - - - ML 92 91 3 94 2 1 1 1 1 * 0.000 -0.318 -0.040 -1.027 0.795 D 93 91 3 94 2 0 0 0 0 * 0.000 IL 94 94 3 94 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 25 ] - - - - - - E 95 94 3 -1 0 0 0 0 0 [ BEGR 26 ] - - - - - - S 96 15 1 97 3 0 22 88 108 -7.421 -0.030 -6.075 IL 97 97 2 97 3 1 23 91 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - U - - - ML 98 97 2 100 3 1 22 88 108 -7.421 -0.030 -6.075 -0.565 -0.749 -1.227 1.203 D 99 97 2 100 3 0 18 86 107 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 22 90 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - A - - - ML 101 100 3 103 3 1 21 87 107 -7.421 -0.030 -6.075 1.349 -1.332 -1.062 -0.793 D 102 100 3 103 3 0 18 85 105 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 21 88 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 31 - U - - - ML 104 103 3 106 3 1 20 86 106 -7.421 -0.030 -6.075 -0.420 -0.434 -1.110 1.035 D 105 103 3 106 3 0 17 84 104 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 20 87 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 32 - C - - - ML 107 106 3 109 3 1 19 85 105 -7.421 -0.030 -6.075 -0.565 1.051 -1.315 -0.234 D 108 106 3 109 3 0 17 83 103 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 19 86 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 33 - U - - - ML 110 109 3 112 3 1 18 84 104 -7.421 -0.030 -6.075 -0.565 -0.749 -1.227 1.203 D 111 109 3 112 3 0 16 82 102 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 18 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - G - - - ML 113 112 3 115 2 1 17 82 102 -7.674 -0.007 -0.469 -1.472 1.244 -0.867 D 114 112 3 115 2 0 16 81 101 -8.445 -0.004 IL 115 115 3 115 2 1 17 83 103 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 33 ] - - - - - - B 116 115 3 117 248 0 16 81 101 [ BEGL 34 ] - - - - - - S 117 116 1 118 4 0 2 59 78 -0.054 -6.563 -5.971 -6.611 [ MATP 35 ] 35 77 G C - - MP 118 117 1 122 6 2 5 59 78 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.720 -2.619 -3.774 0.838 -3.792 -4.242 0.616 -3.900 -3.579 3.243 -3.998 -0.305 0.188 -3.778 -1.379 -2.666 ML 119 117 1 122 6 1 1 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 120 117 1 122 6 1 1 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 121 117 1 122 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 122 122 5 122 6 1 1 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 123 123 6 123 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 36 76 C G - - MP 124 123 6 128 6 2 4 57 76 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.588 -3.364 -3.423 0.288 -2.405 -3.954 3.070 -3.104 -3.456 0.758 -3.803 -1.294 1.183 -3.708 -0.103 -2.334 ML 125 123 6 128 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 126 123 6 128 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 127 123 6 128 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 128 128 5 128 6 1 1 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 129 129 6 129 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 37 75 G C - - MP 130 129 6 134 6 2 4 55 74 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.720 -2.619 -3.774 0.838 -3.792 -4.242 0.616 -3.900 -3.579 3.243 -3.998 -0.305 0.188 -3.778 -1.379 -2.666 ML 131 129 6 134 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 132 129 6 134 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 133 129 6 134 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 134 134 5 134 6 1 1 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 135 135 6 135 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 38 74 G C - - MP 136 135 6 140 4 2 2 53 72 -6.352 -6.559 -0.081 -4.973 -3.720 -2.619 -3.774 0.838 -3.792 -4.242 0.616 -3.900 -3.579 3.243 -3.998 -0.305 0.188 -3.778 -1.379 -2.666 ML 137 135 6 140 4 1 1 53 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 138 135 6 140 4 1 1 52 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 139 135 6 140 4 0 0 51 71 -4.568 -4.250 -2.265 -0.520 IL 140 140 5 140 4 1 1 54 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 141 141 6 141 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - a - - - ML 142 141 6 144 3 1 1 50 69 -7.421 -0.030 -6.075 0.535 -0.475 -0.746 0.304 D 143 141 6 144 3 0 0 49 68 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - u - - - ML 145 144 3 147 5 1 1 49 68 -6.631 -0.054 -6.447 -6.659 -7.551 -0.302 0.342 -1.028 0.517 D 146 144 3 147 5 0 0 48 67 -4.959 -0.803 -4.221 -2.596 -2.508 IL 147 147 3 147 5 1 1 49 68 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 41 73 c g - - MP 148 147 3 152 6 2 2 48 67 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.130 -3.117 -3.107 0.408 -0.626 -3.752 2.922 -2.959 -3.147 0.663 -3.575 -1.258 1.277 -3.327 -0.084 -2.102 ML 149 147 3 152 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 150 147 3 152 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 151 147 3 152 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 152 152 5 152 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 42 72 C G - - MP 154 153 6 158 6 2 2 46 65 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.494 -3.325 -3.342 0.322 -2.328 -3.872 3.001 -3.033 -3.384 0.753 -3.736 -1.305 1.270 -3.606 0.145 -2.261 ML 155 153 6 158 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 156 153 6 158 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 157 153 6 158 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 158 158 5 158 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 159 159 6 159 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 43 71 G C - - MP 160 159 6 164 4 2 2 44 63 -6.352 -6.559 -0.081 -4.973 -3.720 -2.619 -3.774 0.838 -3.792 -4.242 0.616 -3.900 -3.579 3.243 -3.998 -0.305 0.188 -3.778 -1.379 -2.666 ML 161 159 6 164 4 1 1 44 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 162 159 6 164 4 1 1 44 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 163 159 6 164 4 0 0 43 62 -4.568 -4.250 -2.265 -0.520 IL 164 164 5 164 4 1 1 46 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 165 165 6 165 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - U - - - ML 166 165 6 168 5 1 1 41 60 -6.631 -0.054 -6.447 -6.659 -7.551 -0.410 -0.407 -1.102 1.019 D 167 165 6 168 5 0 0 40 59 -4.959 -0.803 -4.221 -2.596 -2.508 IL 168 168 3 168 5 1 1 41 60 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 45 70 G C - - MP 169 168 3 173 6 2 2 40 59 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.720 -2.619 -3.774 0.838 -3.792 -4.242 0.616 -3.900 -3.579 3.243 -3.998 -0.305 0.188 -3.778 -1.379 -2.666 ML 170 168 3 173 6 1 1 39 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 171 168 3 173 6 1 1 39 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 172 168 3 173 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 173 173 5 173 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 174 174 6 174 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 46 69 G C - - MP 175 174 6 179 6 2 2 38 57 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.492 -1.964 -3.561 0.971 -3.748 -4.114 0.603 -3.796 -3.451 3.171 -3.884 -0.203 0.265 -3.556 -1.359 -2.496 ML 176 174 6 179 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 177 174 6 179 6 1 1 37 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 178 174 6 179 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 179 179 5 179 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 180 180 6 180 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 47 68 u a - - MP 181 180 6 185 6 2 2 36 55 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -2.906 -2.522 -2.941 1.539 -2.500 -3.726 1.766 -2.938 -2.960 1.629 -3.435 -0.381 1.826 -3.124 -0.213 -1.890 ML 182 180 6 185 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 183 180 6 185 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 184 180 6 185 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 185 185 5 185 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 186 186 6 186 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 48 67 g c - - MP 187 186 6 191 4 2 2 34 53 -6.328 -7.573 -0.119 -4.027 -3.179 -2.325 -3.243 1.735 -3.346 -4.079 0.982 -3.406 -3.185 2.694 -3.665 0.009 0.619 -3.406 -0.983 -2.148 ML 188 186 6 191 4 1 1 33 52 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 189 186 6 191 4 1 1 33 52 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 190 186 6 191 4 0 0 31 50 -12.737 -14.007 -2.036 -0.404 IL 191 191 5 191 4 1 1 34 52 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 192 192 6 192 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 66 - A - - MR 193 192 6 195 3 1 1 32 51 -7.854 -0.044 -5.276 1.223 -1.189 -0.769 -0.644 D 194 192 6 195 3 0 0 30 49 -6.390 -1.568 -0.620 IR 195 195 3 195 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 65 - a - - MR 196 195 3 198 3 1 1 31 50 -7.836 -0.142 -3.489 0.443 -0.627 -0.332 0.262 D 197 195 3 198 3 0 0 30 48 -6.488 -1.393 -0.718 IR 198 198 3 198 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 64 - g - - MR 199 198 3 201 3 1 1 30 49 -7.742 -0.048 -5.166 0.275 -0.942 0.569 -0.347 D 200 198 3 201 3 0 0 29 48 -6.912 -0.893 -1.142 IR 201 201 3 201 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 52 ] - 63 - g - - MR 202 201 3 204 5 1 1 29 48 -6.616 -0.055 -6.431 -6.643 -7.535 -0.177 -0.942 0.759 -0.147 D 203 201 3 204 5 0 0 28 47 -5.408 -0.673 -3.034 -4.465 -2.459 IR 204 204 3 204 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 49 62 G C - - MP 205 204 3 209 6 2 2 28 47 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.720 -2.619 -3.774 0.838 -3.792 -4.242 0.616 -3.900 -3.579 3.243 -3.998 -0.305 0.188 -3.778 -1.379 -2.666 ML 206 204 3 209 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 207 204 3 209 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 208 204 3 209 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 209 209 5 209 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 50 61 a u - - MP 211 210 6 215 6 2 2 26 45 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.121 -2.345 -3.170 2.534 -3.154 -4.196 1.120 -3.230 -3.099 1.854 -3.607 0.041 0.684 -3.503 -0.834 -2.053 ML 212 210 6 215 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 213 210 6 215 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 214 210 6 215 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 215 215 5 215 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 216 216 6 216 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 51 60 a u - - MP 217 216 6 221 6 2 2 24 43 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.049 -2.264 -3.124 2.485 -3.245 -4.189 1.018 -3.239 -3.052 1.937 -3.574 0.253 0.653 -3.439 -0.926 -2.012 ML 218 216 6 221 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 219 216 6 221 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 220 216 6 221 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 221 221 5 221 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 222 222 6 222 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 52 59 C G - - MP 223 222 6 227 6 2 2 22 41 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.588 -3.364 -3.423 0.288 -2.405 -3.954 3.070 -3.104 -3.456 0.758 -3.803 -1.294 1.183 -3.708 -0.103 -2.334 ML 224 222 6 227 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 225 222 6 227 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 226 222 6 227 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 227 227 5 227 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 228 228 6 228 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 53 58 u a - - MP 229 228 6 233 4 2 2 20 39 -6.352 -6.559 -0.081 -4.973 -3.048 -2.873 -3.050 0.695 -2.382 -3.746 1.874 -2.954 -3.085 1.137 -3.538 -0.877 2.466 -3.233 0.039 -1.584 ML 230 228 6 233 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 231 228 6 233 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 232 228 6 233 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 233 233 5 233 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 234 234 6 234 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 54 - G - - - ML 235 234 6 237 3 1 1 17 35 -7.421 -0.030 -6.075 -0.469 -1.472 1.244 -0.867 D 236 234 6 237 3 0 0 16 35 -6.174 -1.687 -0.566 IL 237 237 3 237 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 55 - A - - - ML 238 237 3 240 3 1 1 15 34 -7.421 -0.030 -6.075 1.349 -1.332 -1.062 -0.793 D 239 237 3 240 3 0 0 15 33 -6.174 -1.687 -0.566 IL 240 240 3 240 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 56 - C - - - ML 241 240 3 243 3 1 1 13 32 -7.421 -0.030 -6.075 -0.565 1.051 -1.315 -0.234 D 242 240 3 243 3 0 0 13 32 -6.174 -1.687 -0.566 IL 243 243 3 243 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 57 - G - - - ML 244 243 3 246 2 1 1 1 1 * 0.000 -0.469 -1.472 1.244 -0.867 D 245 243 3 246 2 0 0 0 0 * 0.000 IL 246 246 3 246 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 247 246 3 -1 0 0 0 0 0 [ BEGR 63 ] - - - - - - S 248 116 1 249 3 0 0 36 55 -7.421 -0.030 -6.075 IL 249 249 2 249 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 78 - A - - - ML 250 249 2 252 3 1 1 36 55 -7.421 -0.030 -6.075 1.170 -1.141 -0.662 -0.591 D 251 249 2 252 3 0 0 35 54 -6.174 -1.687 -0.566 IL 252 252 3 252 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 79 - a - - - ML 253 252 3 255 5 1 1 35 54 -6.631 -0.054 -6.447 -6.659 -7.551 0.744 -0.965 0.061 -0.378 D 254 252 3 255 5 0 0 34 53 -4.959 -0.803 -4.221 -2.596 -2.508 IL 255 255 3 255 5 1 1 36 54 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 80 101 C G - - MP 256 255 3 260 6 2 2 34 53 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.588 -3.364 -3.423 0.288 -2.405 -3.954 3.070 -3.104 -3.456 0.758 -3.803 -1.294 1.183 -3.708 -0.103 -2.334 ML 257 255 3 260 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 258 255 3 260 6 1 1 33 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 259 255 3 260 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 260 260 5 260 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 261 261 6 261 5 1 1 34 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 81 100 C G - - MP 262 261 6 266 6 2 2 32 51 -7.040 -5.442 -0.063 -7.624 -7.904 -8.299 -3.588 -3.364 -3.423 0.288 -2.405 -3.954 3.070 -3.104 -3.456 0.758 -3.803 -1.294 1.183 -3.708 -0.103 -2.334 ML 263 261 6 266 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 264 261 6 266 6 1 1 31 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 265 261 6 266 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 266 266 5 266 6 1 1 32 51 -2.646 -2.489 -0.827 -4.564 -5.340 -5.000 0.000 0.000 0.000 0.000 IR 267 267 6 267 5 1 1 31 50 -2.593 -0.427 -6.104 -4.272 -5.378 0.000 0.000 0.000 0.000 [ MATP 68 ] 83 98 C G - - MP 268 267 6 272 6 2 2 30 49 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.425 -3.341 -3.327 0.277 -1.690 -3.904 3.064 -3.078 -3.369 0.617 -3.752 -1.389 1.223 -3.572 -0.111 -2.274 ML 269 267 6 272 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 270 267 6 272 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 271 267 6 272 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 272 272 5 272 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 273 273 6 273 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 69 ] 84 97 u a - - MP 274 273 6 278 6 2 2 28 47 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -2.255 -2.627 -2.823 0.859 -2.330 -3.578 1.840 -2.839 -2.860 1.284 -3.351 -0.706 2.280 -2.974 0.166 -1.826 ML 275 273 6 278 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 276 273 6 278 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 277 273 6 278 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 278 278 5 278 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 279 279 6 279 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 70 ] 85 96 G C - - MP 280 279 6 284 6 2 2 26 45 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.446 -1.832 -3.514 0.992 -3.709 -4.083 0.624 -3.760 -3.421 3.149 -3.856 -0.189 0.291 -3.513 -1.330 -2.458 ML 281 279 6 284 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 282 279 6 284 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 283 279 6 284 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 284 284 5 284 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 285 285 6 285 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 71 ] 86 95 g c - - MP 286 285 6 290 6 2 2 24 43 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.322 -2.365 -3.394 1.197 -3.616 -4.117 0.736 -3.610 -3.309 2.967 -3.769 0.476 0.409 -3.482 -1.227 -2.306 ML 287 285 6 290 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 288 285 6 290 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 289 285 6 290 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 290 290 5 290 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 291 291 6 291 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 72 ] 87 94 G C - - MP 292 291 6 296 6 2 2 22 41 -8.908 -8.847 -0.024 -7.624 -7.904 -8.299 -3.720 -2.619 -3.774 0.838 -3.792 -4.242 0.616 -3.900 -3.579 3.243 -3.998 -0.305 0.188 -3.778 -1.379 -2.666 ML 293 291 6 296 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 294 291 6 296 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 295 291 6 296 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 296 296 5 296 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 297 297 6 297 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 73 ] 88 93 a u - - MP 298 297 6 302 4 2 2 20 39 -6.352 -6.559 -0.081 -4.973 -3.121 -2.345 -3.170 2.534 -3.154 -4.196 1.120 -3.230 -3.099 1.854 -3.607 0.041 0.684 -3.503 -0.834 -2.053 ML 299 297 6 302 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 300 297 6 302 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 301 297 6 302 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 302 302 5 302 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 303 303 6 303 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 89 - G - - - ML 304 303 6 306 3 1 1 17 35 -7.421 -0.030 -6.075 -0.469 -1.472 1.244 -0.867 D 305 303 6 306 3 0 0 16 35 -6.174 -1.687 -0.566 IL 306 306 3 306 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 75 ] 90 - A - - - ML 307 306 3 309 3 1 1 15 34 -7.421 -0.030 -6.075 1.349 -1.332 -1.062 -0.793 D 308 306 3 309 3 0 0 15 33 -6.174 -1.687 -0.566 IL 309 309 3 309 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 76 ] 91 - C - - - ML 310 309 3 312 3 1 1 13 32 -7.421 -0.030 -6.075 -0.565 1.051 -1.315 -0.234 D 311 309 3 312 3 0 0 13 32 -6.174 -1.687 -0.566 IL 312 312 3 312 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 77 ] 92 - G - - - ML 313 312 3 315 2 1 1 1 1 * 0.000 -0.469 -1.472 1.244 -0.867 D 314 312 3 315 2 0 0 0 0 * 0.000 IL 315 315 3 315 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 78 ] - - - - - - E 316 315 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Gammaretro_CES ACC RF00374 DESC Gammaretrovirus core encapsidation signal LENG 101 MAXL 201 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:34:23 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 22 EFFN 1.517334 CKSUM 3448569808 STATS LOCAL MSV -9.1481 0.71870 STATS LOCAL VITERBI -10.2596 0.71870 STATS LOCAL FORWARD -3.3498 0.71870 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.57225 1.31878 1.20483 1.49069 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 0.00000 * 1 1.46046 2.24722 0.73161 1.70903 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 2 2.02283 1.94809 2.52297 0.43858 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 3 2.64025 0.46706 2.35928 1.57345 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 4 1.80517 1.97700 2.08936 0.55634 4 U - - - 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 5 2.19280 2.74365 0.28320 2.64938 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 6 1.84995 2.05145 2.42151 0.46933 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 7 0.25199 2.80030 2.56830 2.46174 7 A - - - 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 8 2.76269 0.37578 2.47939 1.79377 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 9 2.37421 1.66151 2.07189 0.52575 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 10 0.66184 2.11686 1.46992 2.01183 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 11 2.30884 2.77532 0.25776 2.72550 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 12 2.53030 1.59068 2.22174 0.49732 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 13 2.27039 1.35745 2.00464 0.68379 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 14 0.83300 2.24980 1.19882 1.84335 14 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 15 2.23618 3.04069 0.25863 2.61427 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 16 2.31996 0.34798 2.87943 1.97012 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 17 1.81234 1.38503 2.32733 0.71568 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 18 1.02531 2.16727 0.92261 2.04527 18 g - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 19 0.56707 2.39713 1.42711 2.28440 19 A - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 20 2.94702 0.30052 2.60497 2.01617 20 C - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 21 2.15804 1.66950 1.93055 0.59595 21 U - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 22 0.60865 2.24466 1.49441 2.07486 22 A - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 23 2.06977 2.64960 0.32398 2.52775 23 G - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 24 1.05318 1.25276 1.94407 1.50355 24 a - - - 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 25 2.02283 1.94809 2.52297 0.43858 25 U - - - 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 26 2.87883 0.34342 2.57302 1.84419 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 27 1.85759 2.00102 2.20724 0.51291 27 U - - - 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 28 1.91661 2.51189 0.38555 2.38918 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 29 2.20836 2.24335 2.70475 0.33250 29 U - - , 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 30 0.25199 2.80030 2.56830 2.46174 30 A - - , 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 31 1.95721 1.81634 2.45939 0.49325 31 U - - , 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 32 2.31996 0.34798 2.87943 1.97012 32 C - - , 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 33 2.20836 2.24335 2.70475 0.33250 33 U - - , 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 34 2.23618 3.04069 0.25863 2.61427 34 G - - , 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 35 2.31326 2.77940 0.25635 2.73155 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 36 2.77330 0.37393 2.48354 1.79532 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 37 2.31046 2.77681 0.25725 2.72771 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 38 2.30968 2.77609 0.25749 2.72664 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 39 0.96220 1.75890 2.02126 1.16083 39 a - - - 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 40 1.79458 1.00797 2.32752 0.99073 40 u - - - 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 41 2.48130 0.48093 2.27639 1.63217 41 C - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 42 2.64746 0.45812 2.37084 1.59309 42 C - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 43 2.30863 2.77512 0.25783 2.72520 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 44 1.94314 1.78495 2.44592 0.50701 44 U - - - 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 45 2.30729 2.77389 0.25826 2.72337 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 46 2.06614 2.65542 0.32172 2.54905 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 47 1.46073 1.51604 1.52530 1.10625 47 u - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 48 1.33349 2.23221 0.67154 2.13511 48 G - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 49 2.29100 2.75886 0.26352 2.70119 49 G - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 50 0.57256 2.28152 1.48630 2.22949 50 A - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 51 0.62338 2.34883 1.34104 2.23665 51 A - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 52 2.76167 0.37596 2.47899 1.79362 52 C - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 53 2.29816 1.56982 2.00606 0.58527 53 U - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 54 2.23618 3.04069 0.25863 2.61427 54 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 55 0.25199 2.80030 2.56830 2.46174 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 56 2.31996 0.34798 2.87943 1.97012 56 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 57 2.23618 3.04069 0.25863 2.61427 57 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 58 0.69839 2.16919 1.36566 2.01640 58 a - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 59 2.06608 2.64555 0.32563 2.52220 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 60 2.46019 1.62971 2.16177 0.50505 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 61 2.46516 1.73228 2.10098 0.48485 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 62 2.94000 0.30153 2.60229 2.01480 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.07276 3.71456 3.08316 1.46634 0.26236 1.09861 0.40547 63 1.72767 2.28226 0.64747 1.62517 63 G - - - 1.38629 1.38629 1.38629 1.38629 0.20604 3.69288 1.82451 1.46634 0.26236 0.72450 0.66275 64 1.23606 2.24366 0.81694 1.82249 64 g - - - 1.38629 1.38629 1.38629 1.38629 0.08451 3.57130 2.93909 1.46634 0.26236 0.26907 1.44429 65 1.05361 1.90671 1.62556 1.18432 65 a - - - 1.38629 1.38629 1.38629 1.38629 0.05109 3.69284 3.69284 1.46634 0.26236 0.72408 0.66314 66 0.36240 2.55280 2.15634 2.20381 66 A - - - 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 67 2.36530 0.77206 2.04856 1.15488 67 c - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 68 1.25440 1.69792 1.34620 1.30394 68 a - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 69 2.76542 0.36297 2.47342 1.85057 69 C - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 70 2.92345 0.30396 2.59591 2.01153 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 71 2.93945 0.30161 2.60208 2.01469 71 C - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 72 1.93046 2.52773 0.37851 2.40572 72 G - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 73 1.59302 2.43632 0.50275 2.26005 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 74 2.94317 0.30107 2.60350 2.01542 74 C - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 75 2.94158 0.30130 2.60289 2.01511 75 C - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 76 2.06526 2.64465 0.32600 2.52097 76 G - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 77 2.92948 0.30307 2.59824 2.01272 77 C - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 78 0.40884 2.48082 2.02180 2.12454 78 A - - , 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 79 0.77906 2.25172 1.27814 1.84903 79 a - - , 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 80 2.77072 0.37438 2.48253 1.79494 80 C - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 81 2.77092 0.37435 2.48261 1.79497 81 C - - < 1.38629 1.38629 1.38629 1.38629 0.07967 2.95240 3.71456 0.76431 0.62671 1.09861 0.40547 82 2.72432 0.37398 2.49052 1.81063 83 C - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 83 1.99746 1.48041 1.78662 0.75662 84 u - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 84 2.02400 2.62405 0.33627 2.51408 85 G - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 85 1.87098 2.45370 0.41028 2.33730 86 G - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 86 2.30796 2.77450 0.25804 2.72429 87 G - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 87 0.57094 2.28485 1.48618 2.23513 88 A - - < 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 88 2.23618 3.04069 0.25863 2.61427 89 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 89 0.25199 2.80030 2.56830 2.46174 90 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 90 2.31996 0.34798 2.87943 1.97012 91 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 91 2.23618 3.04069 0.25863 2.61427 92 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 92 2.46594 1.73230 2.10120 0.48469 93 U - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 93 2.94193 0.30125 2.60303 2.01517 94 C - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 94 2.56581 0.55560 2.26973 1.40211 95 C - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 95 2.73817 0.37452 2.44339 1.82744 96 C - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 96 0.89549 1.94964 1.23879 1.83551 97 a - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 97 1.98038 2.64996 0.34382 2.49769 98 G - - > 1.38629 1.38629 1.38629 1.38629 0.20059 1.84908 3.71456 0.28524 1.39365 1.09861 0.40547 98 2.06789 2.64753 0.32482 2.52492 100 G - - > 1.38629 1.38629 1.38629 1.38629 0.04996 3.71456 3.71456 1.46634 0.26236 1.09861 0.40547 99 2.06728 2.64687 0.32509 2.52401 101 G - - > 1.38629 1.38629 1.38629 1.38629 0.16712 3.71456 2.04381 1.46634 0.26236 1.09861 0.40547 100 0.67593 1.98085 1.77036 1.69777 102 A - - : 1.38629 1.38629 1.38629 1.38629 0.05600 3.60344 3.60344 1.46634 0.26236 0.31933 1.29694 101 2.31996 0.34798 2.87943 1.97012 103 C - - : 1.38629 1.38629 1.38629 1.38629 0.02529 3.68989 * 1.46634 0.26236 0.00000 * //