INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-BHRF1-3 ACC RF00367 DESC mir-BHRF1-3 microRNA precursor family STATES 199 NODES 45 CLEN 65 W 81 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 16:21:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00367/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.347656 CKSUM 2123422121 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 100.10 NC 47.80 EFP7GF -8.7229 0.71922 ECMLC 0.71409 -3.79619 4.21202 1600000 365380 0.003284 ECMGC 0.43790 -14.82315 -1.43704 1600000 140547 0.002846 ECMLI 0.68725 -2.51453 5.28820 1600000 255882 0.004690 ECMGI 0.47423 -9.81979 1.73022 1600000 95683 0.004180 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 81 101 -6.687 -6.894 -0.064 -5.308 IL 1 1 2 1 4 1 12 85 105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 12 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 11 81 101 -7.724 -0.024 -6.378 -1.057 -1.132 -1.764 1.469 D 4 2 3 5 3 0 6 80 100 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 11 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 11 80 100 -8.131 -0.022 -6.449 -1.179 1.429 -1.976 -0.709 D 7 5 3 8 3 0 5 79 99 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 9 81 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 65 - U - - MR 9 8 3 11 3 1 10 79 99 -8.131 -0.022 -6.449 -1.057 -1.132 -1.764 1.469 D 10 8 3 11 3 0 4 77 97 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 9 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 64 - A - - MR 12 11 3 14 3 1 9 78 98 -8.131 -0.022 -6.449 1.592 -1.895 -1.574 -1.394 D 13 11 3 14 3 0 3 76 96 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 8 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 63 - A - - MR 15 14 3 17 3 1 9 77 97 -8.131 -0.022 -6.449 1.592 -1.895 -1.574 -1.394 D 16 14 3 17 3 0 2 76 95 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 7 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 62 - A - - MR 18 17 3 20 5 1 9 76 96 -6.886 -0.045 -6.702 -6.914 -7.805 1.592 -1.895 -1.574 -1.394 D 19 17 3 20 5 0 2 75 95 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 5 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 61 U A - - MP 21 20 3 25 6 2 10 75 95 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -3.728 -3.531 -3.614 0.137 -2.663 -4.219 1.653 -3.323 -3.625 0.475 -4.020 -1.443 3.048 -3.894 -0.350 -2.490 ML 22 20 3 25 6 1 4 74 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 3 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 0 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 5 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 5 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 60 A U - - MP 27 26 6 31 6 2 9 73 93 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -3.427 -2.558 -3.467 3.026 -3.628 -4.665 0.651 -3.529 -3.379 1.476 -3.907 -0.101 0.230 -3.911 -1.293 -2.327 ML 28 26 6 31 6 1 3 72 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 3 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 4 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 5 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 59 A U - - MP 33 32 6 37 6 2 9 71 91 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -3.427 -2.558 -3.467 3.026 -3.628 -4.665 0.651 -3.529 -3.379 1.476 -3.907 -0.101 0.230 -3.911 -1.293 -2.327 ML 34 32 6 37 6 1 3 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 3 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 4 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 4 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 58 C G - - MP 39 38 6 43 6 2 8 69 89 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -4.079 -3.937 -3.845 -0.219 -2.676 -4.316 3.373 -3.437 -3.882 0.103 -4.190 -1.880 0.880 -4.177 -0.375 -2.740 ML 40 38 6 43 6 1 3 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 3 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 4 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 4 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 57 G C - - MP 45 44 6 49 6 2 7 67 87 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -4.277 -2.876 -4.345 0.499 -4.579 -4.503 -0.054 -4.546 -4.008 3.503 -4.381 -0.562 -0.455 -4.159 -2.069 -3.230 ML 46 44 6 49 6 1 2 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 2 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 3 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 3 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 56 g u - - MP 51 50 6 55 6 2 5 65 85 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -3.326 -2.222 -3.465 1.293 -3.942 -4.685 0.391 -3.533 -3.216 1.746 -3.724 2.693 0.029 -3.943 -1.547 -2.235 ML 52 50 6 55 6 1 2 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 2 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 3 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 3 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 55 g u - - MP 57 56 6 61 4 2 4 63 83 -6.687 -6.894 -0.064 -5.308 -3.326 -2.222 -3.465 1.293 -3.942 -4.685 0.391 -3.533 -3.216 1.746 -3.724 2.693 0.029 -3.943 -1.547 -2.235 ML 58 56 6 61 4 1 1 63 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 63 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 62 82 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 2 65 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 2 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - A - - - ML 63 62 6 65 3 1 2 61 80 -8.131 -0.022 -6.449 1.592 -1.895 -1.574 -1.394 D 64 62 6 65 3 0 0 59 79 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 1 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 54 - C - - MR 66 65 3 68 5 1 2 60 79 -6.886 -0.045 -6.702 -6.914 -7.805 -1.179 1.429 -1.976 -0.709 D 67 65 3 68 5 0 0 58 78 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 1 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 53 A U - - MP 69 68 3 73 6 2 3 59 78 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -3.427 -2.558 -3.467 3.026 -3.628 -4.665 0.651 -3.529 -3.379 1.476 -3.907 -0.101 0.230 -3.911 -1.293 -2.327 ML 70 68 3 73 6 1 1 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 52 G C - - MP 75 74 6 79 6 2 3 57 76 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -4.277 -2.876 -4.345 0.499 -4.579 -4.503 -0.054 -4.546 -4.008 3.503 -4.381 -0.562 -0.455 -4.159 -2.069 -3.230 ML 76 74 6 79 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 51 u g - - MP 81 80 6 85 6 2 3 55 74 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -3.623 -3.521 -3.430 0.096 -2.346 -3.935 1.925 -3.069 -3.467 0.375 -3.809 -1.536 1.149 -3.750 2.633 -2.363 ML 82 80 6 85 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 50 G C - - MP 87 86 6 91 6 2 2 53 72 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -4.277 -2.876 -4.345 0.499 -4.579 -4.503 -0.054 -4.546 -4.008 3.503 -4.381 -0.562 -0.455 -4.159 -2.069 -3.230 ML 88 86 6 91 6 1 1 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 49 U A - - MP 93 92 6 97 6 2 2 51 70 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -3.728 -3.531 -3.614 0.137 -2.663 -4.219 1.653 -3.323 -3.625 0.475 -4.020 -1.443 3.048 -3.894 -0.350 -2.490 ML 94 92 6 97 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 48 G C - - MP 99 98 6 103 4 2 2 49 68 -6.687 -6.894 -0.064 -5.308 -4.277 -2.876 -4.345 0.499 -4.579 -4.503 -0.054 -4.546 -4.008 3.503 -4.381 -0.562 -0.455 -4.159 -2.069 -3.230 ML 100 98 6 103 4 1 1 49 69 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 48 68 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 102 98 6 103 4 0 0 47 67 -4.568 -4.250 -2.265 -0.520 IL 103 103 5 103 4 1 1 50 70 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - - - ML 105 104 6 107 5 1 1 46 66 -6.886 -0.045 -6.702 -6.914 -7.805 -1.057 -1.132 -1.764 1.469 D 106 104 6 107 5 0 0 45 64 -4.959 -0.803 -4.221 -2.596 -2.508 IL 107 107 3 107 5 1 1 47 66 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 47 A U - - MP 108 107 3 112 6 2 2 45 65 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -3.427 -2.558 -3.467 3.026 -3.628 -4.665 0.651 -3.529 -3.379 1.476 -3.907 -0.101 0.230 -3.911 -1.293 -2.327 ML 109 107 3 112 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 3 112 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 3 112 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 46 A U - - MP 114 113 6 118 6 2 2 43 63 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -3.427 -2.558 -3.467 3.026 -3.628 -4.665 0.651 -3.529 -3.379 1.476 -3.907 -0.101 0.230 -3.911 -1.293 -2.327 ML 115 113 6 118 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 45 G C - - MP 120 119 6 124 6 2 2 41 61 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -4.277 -2.876 -4.345 0.499 -4.579 -4.503 -0.054 -4.546 -4.008 3.503 -4.381 -0.562 -0.455 -4.159 -2.069 -3.230 ML 121 119 6 124 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 44 C G - - MP 126 125 6 130 6 2 2 39 59 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -4.079 -3.937 -3.845 -0.219 -2.676 -4.316 3.373 -3.437 -3.882 0.103 -4.190 -1.880 0.880 -4.177 -0.375 -2.740 ML 127 125 6 130 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 43 A U - - MP 132 131 6 136 6 2 2 37 57 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -3.427 -2.558 -3.467 3.026 -3.628 -4.665 0.651 -3.529 -3.379 1.476 -3.907 -0.101 0.230 -3.911 -1.293 -2.327 ML 133 131 6 136 6 1 1 36 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 36 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 34 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 42 C G - - MP 138 137 6 142 4 2 2 35 55 -6.687 -6.894 -0.064 -5.308 -4.079 -3.937 -3.845 -0.219 -2.676 -4.316 3.373 -3.437 -3.882 0.103 -4.190 -1.880 0.880 -4.177 -0.375 -2.740 ML 139 137 6 142 4 1 1 36 55 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 35 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 34 54 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 37 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 24 - A - - - ML 144 143 6 146 3 1 1 33 52 -7.724 -0.024 -6.378 1.592 -1.895 -1.574 -1.394 D 145 143 6 146 3 0 0 31 51 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - C - - - ML 147 146 3 149 3 1 1 32 51 -7.724 -0.024 -6.378 -1.179 1.429 -1.976 -0.709 D 148 146 3 149 3 0 0 30 49 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - A - - - ML 150 149 3 152 5 1 1 30 49 -6.886 -0.045 -6.702 -6.914 -7.805 1.592 -1.895 -1.574 -1.394 D 151 149 3 152 5 0 0 29 48 -4.959 -0.803 -4.221 -2.596 -2.508 IL 152 152 3 152 5 1 1 31 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 27 41 C G - - MP 153 152 3 157 6 2 2 29 48 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -4.079 -3.937 -3.845 -0.219 -2.676 -4.316 3.373 -3.437 -3.882 0.103 -4.190 -1.880 0.880 -4.177 -0.375 -2.740 ML 154 152 3 157 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 3 157 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 3 157 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 28 40 G C - - MP 159 158 6 163 6 2 2 27 46 -9.014 -8.953 -0.023 -7.729 -8.009 -8.404 -4.277 -2.876 -4.345 0.499 -4.579 -4.503 -0.054 -4.546 -4.008 3.503 -4.381 -0.562 -0.455 -4.159 -2.069 -3.230 ML 160 158 6 163 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 29 39 u g - - MP 165 164 6 169 4 2 2 25 44 -6.687 -6.894 -0.064 -5.308 -3.623 -3.521 -3.430 0.096 -2.346 -3.935 1.925 -3.069 -3.467 0.375 -3.809 -1.536 1.149 -3.750 2.633 -2.363 ML 166 164 6 169 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 27 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - A - - - ML 171 170 6 173 3 1 1 23 41 -7.724 -0.024 -6.378 1.592 -1.895 -1.574 -1.394 D 172 170 6 173 3 0 0 21 40 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - A - - - ML 174 173 3 176 3 1 1 21 40 -7.724 -0.024 -6.378 1.592 -1.895 -1.574 -1.394 D 175 173 3 176 3 0 0 20 39 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - U - - - ML 177 176 3 179 3 1 1 20 39 -7.724 -0.024 -6.378 -1.057 -1.132 -1.764 1.469 D 178 176 3 179 3 0 0 19 38 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - U - - - ML 180 179 3 182 3 1 1 19 38 -7.724 -0.024 -6.378 -1.057 -1.132 -1.764 1.469 D 181 179 3 182 3 0 0 18 37 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - U - - - ML 183 182 3 185 3 1 1 18 36 -7.724 -0.024 -6.378 -1.057 -1.132 -1.764 1.469 D 184 182 3 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 35 - G - - - ML 186 185 3 188 3 1 1 16 35 -7.724 -0.024 -6.378 -1.069 -2.201 1.572 -1.586 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 36 - C - - - ML 189 188 3 191 3 1 1 15 33 -7.724 -0.024 -6.378 -1.179 1.429 -1.976 -0.709 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 37 - A - - - ML 192 191 3 194 3 1 1 13 32 -7.724 -0.024 -6.378 1.592 -1.895 -1.574 -1.394 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - A - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 1.592 -1.895 -1.574 -1.394 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-BHRF1-3 ACC RF00367 DESC mir-BHRF1-3 microRNA precursor family LENG 65 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 16:21:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00367/CM NSEQ 4 EFFN 2.011719 CKSUM 2123422121 STATS LOCAL MSV -8.0869 0.71922 STATS LOCAL VITERBI -8.9321 0.71922 STATS LOCAL FORWARD -3.5128 0.71922 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.33856 1.44606 1.40642 1.35766 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 0.00000 * 1 2.45608 2.44656 2.96662 0.25340 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 2 2.64569 0.24675 3.21825 2.22859 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 3 2.78807 1.77248 2.51919 0.37393 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 4 0.41698 2.57635 1.69227 2.51558 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 5 0.41690 2.57661 1.69230 2.51597 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 6 3.03004 0.28472 2.78339 1.98314 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 7 2.47951 3.06839 0.19789 3.01069 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 8 1.84745 2.72834 0.35154 2.61138 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 9 1.84732 2.72811 0.35163 2.61106 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 10 0.18567 3.07366 2.81417 2.76076 10 A - - - 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 11 0.41730 2.57541 1.69215 2.51415 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 12 2.47940 3.06827 0.19792 3.01052 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 13 2.78919 1.49819 2.55834 0.45010 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 14 2.47980 3.06871 0.19781 3.01115 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 15 2.79089 1.77257 2.52033 0.37352 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 16 2.47915 3.06800 0.19798 3.01014 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 17 2.45608 2.44656 2.96662 0.25340 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 18 0.41698 2.57637 1.69227 2.51561 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 19 0.41693 2.57650 1.69229 2.51580 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 20 2.47953 3.06841 0.19788 3.01072 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 21 3.02891 0.28487 2.78289 1.98296 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 22 0.41707 2.57609 1.69224 2.51519 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 23 3.02764 0.28504 2.78232 1.98275 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 24 0.18567 3.07366 2.81417 2.76076 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 25 2.64569 0.24675 3.21825 2.22859 25 C - - - 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 26 0.18567 3.07366 2.81417 2.76076 26 A - - - 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 27 3.03079 0.28462 2.78373 1.98327 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 28 2.48022 3.06917 0.19770 3.01180 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 29 2.78928 1.49819 2.55838 0.45009 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 30 0.18567 3.07366 2.81417 2.76076 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 31 0.18567 3.07366 2.81417 2.76076 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 32 2.45608 2.44656 2.96662 0.25340 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 33 2.45608 2.44656 2.96662 0.25340 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 34 2.45608 2.44656 2.96662 0.25340 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 35 2.52784 3.38072 0.18139 2.95589 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 36 2.64569 0.24675 3.21825 2.22859 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 37 0.18567 3.07366 2.81417 2.76076 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 38 0.18567 3.07366 2.81417 2.76076 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 39 2.01798 2.73131 0.32496 2.53343 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 40 3.21164 0.23391 2.89665 2.17977 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 41 2.25345 2.94357 0.24825 2.77867 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 42 2.25756 2.94880 0.24683 2.78522 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 43 2.74234 1.96723 2.38924 0.35092 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 44 2.25728 2.94844 0.24692 2.78477 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 45 3.21336 0.23372 2.89738 2.18011 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 46 2.73741 1.96677 2.38753 0.35169 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 47 2.73116 1.96619 2.38535 0.35267 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 48 3.22021 0.23299 2.90027 2.18143 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 49 0.42431 2.70149 1.60944 2.54249 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 50 3.22389 0.23259 2.90182 2.18214 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 51 2.02015 2.73426 0.32390 2.53702 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 52 3.22978 0.23197 2.90429 2.18327 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 53 2.75225 1.96813 2.39266 0.34940 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 54 2.64569 0.24675 3.21825 2.22859 54 C - - - 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 55 2.82521 1.76967 2.53043 0.37007 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 56 2.82604 1.76969 2.53076 0.36995 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 57 3.22184 0.23281 2.90096 2.18174 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 58 2.25967 2.95149 0.24610 2.78859 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 59 2.74792 1.96774 2.39117 0.35006 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 60 2.74979 1.96791 2.39181 0.34977 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 61 0.42344 2.70468 1.60960 2.54660 61 A - - > 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 62 0.18567 3.07366 2.81417 2.76076 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 63 0.18567 3.07366 2.81417 2.76076 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 64 0.18567 3.07366 2.81417 2.76076 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.04537 3.80857 3.80857 1.46634 0.26236 1.09861 0.40547 65 2.45608 2.44656 2.96662 0.25340 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.02294 3.78614 * 1.46634 0.26236 0.00000 * //