INFERNAL1/a [1.1.5 | Sep 2023] NAME snoZ40 ACC RF00342 DESC Small nucleolar RNA Z40 STATES 223 NODES 70 CLEN 73 W 90 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 19:38:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00342/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 1.557617 CKSUM 1505846674 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 50.10 NC 49.70 EFP7GF -8.2842 0.71868 ECMLC 0.69651 -4.79743 3.24960 1600000 326086 0.003680 ECMGC 0.42202 -16.70642 -3.68424 1600000 97447 0.004105 ECMLI 0.64146 -3.26255 4.95027 1600000 232881 0.005153 ECMGI 0.45559 -10.91924 0.27792 1600000 65696 0.006089 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 90 111 -6.787 -6.994 -0.221 -3.001 IL 1 1 2 1 4 1 29 94 115 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 28 93 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 28 90 111 -8.085 -0.023 -6.403 -0.484 0.351 -1.232 0.663 D 4 2 3 5 3 0 23 89 109 -6.179 -1.293 -0.791 IL 5 5 3 5 3 1 27 91 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 73 - a - - MR 6 5 3 8 5 1 28 89 110 -6.844 -0.047 -6.659 -6.871 -7.763 0.555 0.158 -0.930 -0.167 D 7 5 3 8 5 0 21 88 108 -5.803 -0.481 -3.430 -4.861 -2.855 IR 8 8 3 8 5 1 25 89 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 72 G C - - MP 9 8 3 13 6 2 28 88 109 -9.048 -8.987 -0.022 -7.764 -8.044 -8.439 -4.455 -2.958 -4.532 0.387 -4.828 -4.578 -0.262 -4.750 -4.134 3.561 -4.493 -0.648 -0.656 -4.278 -2.285 -3.413 ML 10 8 3 13 6 1 22 87 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 22 86 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 17 84 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 24 88 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 24 87 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 71 A U - - MP 15 14 6 19 6 2 27 86 107 -9.048 -8.987 -0.022 -7.764 -8.044 -8.439 -3.555 -2.650 -3.589 3.153 -3.812 -4.856 0.473 -3.646 -3.493 1.334 -4.029 -0.168 0.054 -4.082 -1.469 -2.439 ML 16 14 6 19 6 1 22 85 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 21 84 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 17 82 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 23 86 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 24 85 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 70 U A - - MP 21 20 6 25 6 2 25 84 105 -9.048 -8.987 -0.022 -7.764 -8.044 -8.439 -3.891 -3.704 -3.761 -0.022 -2.770 -4.352 1.551 -3.443 -3.769 0.282 -4.157 -1.612 3.163 -4.052 -0.454 -2.621 ML 22 20 6 25 6 1 21 83 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 20 83 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 16 80 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 22 84 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 22 83 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 69 G C - - MP 27 26 6 31 6 2 23 82 103 -9.048 -8.987 -0.022 -7.764 -8.044 -8.439 -4.455 -2.958 -4.532 0.387 -4.828 -4.578 -0.262 -4.750 -4.134 3.561 -4.493 -0.648 -0.656 -4.278 -2.285 -3.413 ML 28 26 6 31 6 1 20 81 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 19 81 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 16 79 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 21 82 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 21 81 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 68 U A - - MP 33 32 6 37 4 2 21 80 101 -6.787 -6.994 -0.060 -5.408 -3.891 -3.704 -3.761 -0.022 -2.770 -4.352 1.551 -3.443 -3.769 0.282 -4.157 -1.612 3.163 -4.052 -0.454 -2.621 ML 34 32 6 37 4 1 19 80 101 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 17 80 100 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 16 79 99 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 20 81 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 20 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - U - - - ML 39 38 6 41 3 1 20 78 98 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 40 38 6 41 3 0 15 76 97 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 19 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - A - - - ML 42 41 3 44 3 1 19 77 97 -7.815 -0.023 -6.470 1.178 -1.363 -0.359 -0.814 D 43 41 3 44 3 0 14 75 96 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 18 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - U - - - ML 45 44 3 47 3 1 18 76 96 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 46 44 3 47 3 0 13 74 95 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 18 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - G - - - ML 48 47 3 50 3 1 17 75 95 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 49 47 3 50 3 0 13 73 94 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 17 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - A - - - ML 51 50 3 53 3 1 16 74 94 -7.815 -0.023 -6.470 1.646 -2.074 -1.736 -1.588 D 52 50 3 53 3 0 12 72 93 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 16 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - U - - - ML 54 53 3 56 3 1 15 73 93 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 55 53 3 56 3 0 11 71 92 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 15 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - G - - - ML 57 56 3 59 3 1 14 72 92 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 58 56 3 59 3 0 11 70 90 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 14 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - A - - - ML 60 59 3 62 3 1 14 71 91 -7.815 -0.167 -3.257 1.646 -2.074 -1.736 -1.588 D 61 59 3 62 3 0 10 69 90 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 14 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - U - - - ML 63 62 3 65 3 1 14 70 90 -7.674 -0.025 -6.328 -0.972 -1.064 -1.673 1.432 D 64 62 3 65 3 0 9 68 89 -7.005 -0.708 -1.396 IL 65 65 3 65 3 1 13 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - G - - - ML 66 65 3 68 3 1 13 69 89 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 67 65 3 68 3 0 7 67 87 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 12 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - G - - - ML 69 68 3 71 3 1 12 67 88 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 70 68 3 71 3 0 7 66 86 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 11 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - G - - - ML 72 71 3 74 3 1 12 66 87 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 73 71 3 74 3 0 6 65 85 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 11 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - C - - - ML 75 74 3 77 3 1 11 65 86 -7.815 -0.023 -6.470 -1.387 1.513 -2.196 -0.874 D 76 74 3 77 3 0 5 64 84 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 10 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - a - - - ML 78 77 3 80 3 1 10 64 84 -7.815 -0.023 -6.470 0.849 -1.260 0.209 -0.677 D 79 77 3 80 3 0 5 63 83 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 9 66 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - A - - - ML 81 80 3 83 3 1 10 63 83 -7.815 -0.023 -6.470 1.646 -2.074 -1.736 -1.588 D 82 80 3 83 3 0 4 62 82 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 8 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - a - - - ML 84 83 3 86 3 1 9 62 82 -7.815 -0.023 -6.470 0.774 -0.034 -1.000 -0.298 D 85 83 3 86 3 0 3 61 81 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 8 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - A - - - ML 87 86 3 89 3 1 8 61 81 -7.815 -0.023 -6.470 1.646 -2.074 -1.736 -1.588 D 88 86 3 89 3 0 2 60 80 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 7 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - U - - - ML 90 89 3 92 3 1 8 60 80 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 91 89 3 92 3 0 2 59 79 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 6 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - G - - - ML 93 92 3 95 3 1 7 59 79 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 94 92 3 95 3 0 1 58 78 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 26 - U - - - ML 96 95 3 98 3 1 6 58 78 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 97 95 3 98 3 0 0 57 77 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 5 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 27 - U - - - ML 99 98 3 101 3 1 6 57 77 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 100 98 3 101 3 0 0 56 76 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 4 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - C - - - ML 102 101 3 104 3 1 5 56 76 -7.815 -0.023 -6.470 -1.387 1.513 -2.196 -0.874 D 103 101 3 104 3 0 0 54 75 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 4 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - A - - - ML 105 104 3 107 3 1 5 55 75 -7.815 -0.023 -6.470 1.646 -2.074 -1.736 -1.588 D 106 104 3 107 3 0 0 53 73 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 3 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - A - - - ML 108 107 3 110 3 1 4 54 74 -7.815 -0.023 -6.470 1.646 -2.074 -1.736 -1.588 D 109 107 3 110 3 0 0 52 72 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 3 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - C - - - ML 111 110 3 113 3 1 4 53 73 -7.815 -0.023 -6.470 -1.387 1.513 -2.196 -0.874 D 112 110 3 113 3 0 0 51 71 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 2 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 32 - U - - - ML 114 113 3 116 3 1 3 52 72 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 115 113 3 116 3 0 0 50 70 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 33 - G - - - ML 117 116 3 119 3 1 3 51 70 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 118 116 3 119 3 0 0 49 69 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - C - - - ML 120 119 3 122 3 1 2 50 69 -7.815 -0.023 -6.470 -1.387 1.513 -2.196 -0.874 D 121 119 3 122 3 0 0 48 68 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - - - ML 123 122 3 125 3 1 2 49 68 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 124 122 3 125 3 0 0 47 67 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - C - - - ML 126 125 3 128 3 1 2 48 67 -7.815 -0.023 -6.470 -1.387 1.513 -2.196 -0.874 D 127 125 3 128 3 0 0 46 66 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - U - - - ML 129 128 3 131 3 1 1 46 66 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 130 128 3 131 3 0 0 45 65 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - G - - - ML 132 131 3 134 3 1 1 45 65 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 133 131 3 134 3 0 0 44 64 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - A - - - ML 135 134 3 137 3 1 1 44 64 -7.815 -0.023 -6.470 1.646 -2.074 -1.736 -1.588 D 136 134 3 137 3 0 0 43 63 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - A - - - ML 138 137 3 140 3 1 1 43 63 -7.815 -0.023 -6.470 1.646 -2.074 -1.736 -1.588 D 139 137 3 140 3 0 0 42 62 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 41 - u - - - ML 141 140 3 143 3 1 1 42 62 -7.815 -0.023 -6.470 -0.309 -0.814 0.027 0.682 D 142 140 3 143 3 0 0 41 60 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 42 - G - - - ML 144 143 3 146 3 1 1 41 61 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 145 143 3 146 3 0 0 40 59 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 43 - G - - - ML 147 146 3 149 3 1 1 40 60 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 148 146 3 149 3 0 0 39 58 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 44 - G - - - ML 150 149 3 152 3 1 1 39 58 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 151 149 3 152 3 0 0 38 57 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 45 - C - - - ML 153 152 3 155 3 1 1 38 57 -7.815 -0.023 -6.470 -1.387 1.513 -2.196 -0.874 D 154 152 3 155 3 0 0 37 56 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 46 - U - - - ML 156 155 3 158 3 1 1 37 56 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 157 155 3 158 3 0 0 36 55 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 47 - G - - - ML 159 158 3 161 3 1 1 36 55 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 160 158 3 161 3 0 0 34 54 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 48 - A - - - ML 162 161 3 164 3 1 1 35 54 -7.815 -0.023 -6.470 1.646 -2.074 -1.736 -1.588 D 163 161 3 164 3 0 0 33 53 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 49 - A - - - ML 165 164 3 167 3 1 1 34 53 -7.815 -0.023 -6.470 1.646 -2.074 -1.736 -1.588 D 166 164 3 167 3 0 0 32 52 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 50 - U - - - ML 168 167 3 170 3 1 1 33 52 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 169 167 3 170 3 0 0 31 51 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 51 - G - - - ML 171 170 3 173 3 1 1 31 51 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 172 170 3 173 3 0 0 30 49 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 52 - A - - - ML 174 173 3 176 3 1 1 30 49 -7.815 -0.023 -6.470 1.646 -2.074 -1.736 -1.588 D 175 173 3 176 3 0 0 29 48 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 53 - A - - - ML 177 176 3 179 3 1 1 29 48 -7.815 -0.023 -6.470 1.646 -2.074 -1.736 -1.588 D 178 176 3 179 3 0 0 28 47 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - A - - - ML 180 179 3 182 3 1 1 28 47 -7.815 -0.023 -6.470 1.646 -2.074 -1.736 -1.588 D 181 179 3 182 3 0 0 27 46 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - A - - - ML 183 182 3 185 3 1 1 27 46 -7.815 -0.023 -6.470 1.178 -1.363 -0.359 -0.814 D 184 182 3 185 3 0 0 26 45 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - U - - - ML 186 185 3 188 3 1 1 26 45 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 187 185 3 188 3 0 0 25 44 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - a - - - ML 189 188 3 191 3 1 1 25 44 -7.815 -0.023 -6.470 0.849 -1.260 0.209 -0.677 D 190 188 3 191 3 0 0 24 43 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 58 - G - - - ML 192 191 3 194 3 1 1 24 42 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 193 191 3 194 3 0 0 23 42 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 59 - C - - - ML 195 194 3 197 3 1 1 22 41 -7.815 -0.023 -6.470 -1.387 1.513 -2.196 -0.874 D 196 194 3 197 3 0 0 21 40 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 60 - C - - - ML 198 197 3 200 3 1 1 21 40 -7.815 -0.023 -6.470 -1.387 1.513 -2.196 -0.874 D 199 197 3 200 3 0 0 20 39 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 61 - U - - - ML 201 200 3 203 3 1 1 20 39 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 202 200 3 203 3 0 0 19 38 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 62 - U - - - ML 204 203 3 206 3 1 1 19 38 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 205 203 3 206 3 0 0 18 37 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 63 - U - - - ML 207 206 3 209 3 1 1 18 36 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 208 206 3 209 3 0 0 17 36 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 64 - C - - - ML 210 209 3 212 3 1 1 16 35 -7.815 -0.023 -6.470 -1.387 1.513 -2.196 -0.874 D 211 209 3 212 3 0 0 16 34 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 65 - U - - - ML 213 212 3 215 3 1 1 15 33 -7.815 -0.023 -6.470 -1.216 -1.261 -1.934 1.531 D 214 212 3 215 3 0 0 15 33 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 66 - G - - - ML 216 215 3 218 3 1 1 13 32 -7.815 -0.023 -6.470 -1.262 -2.430 1.638 -1.815 D 217 215 3 218 3 0 0 13 32 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 67 - A - - - ML 219 218 3 221 2 1 1 1 1 * 0.000 1.646 -2.074 -1.736 -1.588 D 220 218 3 221 2 0 0 0 0 * 0.000 IL 221 221 3 221 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 69 ] - - - - - - E 222 221 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME snoZ40 ACC RF00342 DESC Small nucleolar RNA Z40 LENG 73 MAXL 163 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 19:38:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00342/CM NSEQ 5 EFFN 1.704102 CKSUM 1505846674 STATS LOCAL MSV -7.8313 0.71868 STATS LOCAL VITERBI -9.1166 0.71868 STATS LOCAL FORWARD -3.6914 0.71868 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27167 1.65554 1.36172 1.30038 1.38629 1.38629 1.38629 1.38629 0.16113 3.80009 2.06792 1.46634 0.26236 0.00000 * 1 1.74883 1.12758 2.27148 0.91868 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.05122 3.69018 3.69018 1.46634 0.26236 0.30292 1.34193 2 2.36010 2.87658 0.23641 2.81661 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 3 0.50751 2.39047 1.56269 2.33462 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 4 2.62118 1.65687 2.33193 0.44716 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 5 2.37227 2.88866 0.23281 2.83408 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 6 2.62428 1.65688 2.33307 0.44664 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 7 2.30420 2.32161 2.80658 0.29890 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 8 0.55190 2.36945 1.63882 1.99216 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 9 2.30420 2.32161 2.80658 0.29890 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 10 2.35089 3.17537 0.22442 2.74955 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 11 0.22339 2.90707 2.66434 2.57817 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 12 2.30420 2.32161 2.80658 0.29890 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 13 2.35089 3.17537 0.22442 2.74955 13 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 14 0.22339 2.90707 2.66434 2.57817 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.16113 3.80009 2.06792 1.46634 0.26236 1.09861 0.40547 15 2.12285 2.17407 2.61325 0.36629 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05122 3.69018 3.69018 1.46634 0.26236 0.30292 1.34193 16 2.35089 3.17537 0.22442 2.74955 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 17 2.35089 3.17537 0.22442 2.74955 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 18 2.35089 3.17537 0.22442 2.74955 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 19 2.44594 0.30391 3.01148 2.06983 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 20 0.78534 2.29381 1.23020 1.89101 20 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 21 0.22339 2.90707 2.66434 2.57817 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 22 0.83645 1.40045 2.10620 1.61662 22 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 23 0.22339 2.90707 2.66434 2.57817 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 24 2.30420 2.32161 2.80658 0.29890 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 25 2.35089 3.17537 0.22442 2.74955 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 26 2.30420 2.32161 2.80658 0.29890 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 27 2.30420 2.32161 2.80658 0.29890 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 28 2.44594 0.30391 3.01148 2.06983 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 29 0.22339 2.90707 2.66434 2.57817 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 30 0.22339 2.90707 2.66434 2.57817 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 31 2.44594 0.30391 3.01148 2.06983 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 32 2.30420 2.32161 2.80658 0.29890 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 33 2.35089 3.17537 0.22442 2.74955 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 34 2.44594 0.30391 3.01148 2.06983 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 35 2.30420 2.32161 2.80658 0.29890 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 36 2.44594 0.30391 3.01148 2.06983 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 37 2.30420 2.32161 2.80658 0.29890 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 38 2.35089 3.17537 0.22442 2.74955 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 39 0.22339 2.90707 2.66434 2.57817 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 40 0.22339 2.90707 2.66434 2.57817 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 41 1.62126 1.97196 1.35966 0.90037 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 42 2.35089 3.17537 0.22442 2.74955 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 43 2.35089 3.17537 0.22442 2.74955 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 44 2.35089 3.17537 0.22442 2.74955 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 45 2.44594 0.30391 3.01148 2.06983 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 46 2.30420 2.32161 2.80658 0.29890 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 47 2.35089 3.17537 0.22442 2.74955 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 48 0.22339 2.90707 2.66434 2.57817 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 49 0.22339 2.90707 2.66434 2.57817 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 50 2.30420 2.32161 2.80658 0.29890 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 51 2.35089 3.17537 0.22442 2.74955 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 52 0.22339 2.90707 2.66434 2.57817 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 53 0.22339 2.90707 2.66434 2.57817 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 54 0.22339 2.90707 2.66434 2.57817 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 55 0.55190 2.36945 1.63882 1.99216 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 56 2.30420 2.32161 2.80658 0.29890 56 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 57 0.78534 2.29381 1.23020 1.89101 57 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 58 2.35089 3.17537 0.22442 2.74955 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 59 2.44594 0.30391 3.01148 2.06983 59 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 60 2.44594 0.30391 3.01148 2.06983 60 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 61 2.30420 2.32161 2.80658 0.29890 61 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 62 2.30420 2.32161 2.80658 0.29890 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 63 2.30420 2.32161 2.80658 0.29890 63 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 64 2.44594 0.30391 3.01148 2.06983 64 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 65 2.30420 2.32161 2.80658 0.29890 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 66 2.35089 3.17537 0.22442 2.74955 66 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 67 0.22339 2.90707 2.66434 2.57817 67 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 68 0.50822 2.51072 1.49354 2.37893 68 A - - > 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 69 3.05093 0.27206 2.72005 2.07941 69 C - - > 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 70 0.50816 2.51091 1.49354 2.37919 70 A - - > 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 71 2.56955 1.81988 2.20882 0.42839 71 U - - > 1.38629 1.38629 1.38629 1.38629 0.04577 3.80009 3.80009 1.46634 0.26236 1.09861 0.40547 72 3.05146 0.27199 2.72027 2.07952 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.16113 3.80009 2.06792 1.46634 0.26236 1.09861 0.40547 73 0.99360 1.26282 2.05326 1.52057 73 a - - : 1.38629 1.38629 1.38629 1.38629 0.02594 3.66490 * 1.46634 0.26236 0.00000 * //