INFERNAL1/a [1.1.5 | Sep 2023] NAME snoZ39 ACC RF00341 DESC Small nucleolar RNA Z39 STATES 193 NODES 50 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 16:48:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00341/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 2.006836 CKSUM 1742548023 NULL 0.000 0.000 0.000 0.000 GA 39.00 TC 39.00 NC 38.80 EFP7GF -9.5139 0.71914 ECMLC 0.61304 -5.14717 3.91946 1600000 311228 0.003856 ECMGC 0.41949 -13.86114 -0.07374 1600000 129975 0.003078 ECMLI 0.60909 -3.43331 5.35978 1600000 254192 0.004721 ECMGI 0.49368 -8.16401 2.98820 1600000 98434 0.004064 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 99 -6.979 -7.186 -0.228 -2.929 IL 1 1 2 1 4 1 17 83 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 5 1 17 79 99 -6.983 -0.042 -6.798 -7.010 -7.902 -1.308 -2.483 1.652 -1.868 D 4 2 3 5 5 0 11 78 97 -5.589 -0.466 -4.850 -3.225 -3.137 IL 5 5 3 5 5 1 14 79 99 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 64 u a - - MP 6 5 3 10 6 2 17 78 98 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -3.694 -3.623 -3.568 0.104 -2.519 -4.139 2.302 -3.227 -3.584 0.360 -3.972 -1.607 2.707 -3.833 -0.198 -2.457 ML 7 5 3 10 6 1 12 76 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 11 76 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 7 74 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 13 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 13 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 63 a u - - MP 12 11 6 16 6 2 16 76 96 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -3.300 -2.388 -3.364 2.403 -3.830 -4.387 0.442 -3.634 -3.356 2.285 -3.855 0.958 0.174 -3.589 -1.462 -2.274 ML 13 11 6 16 6 1 11 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 10 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 6 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 12 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 12 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 62 C G - - MP 18 17 6 22 6 2 14 74 94 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -3.822 -3.795 -3.649 -0.072 -2.514 -4.163 3.041 -3.256 -3.671 0.145 -4.029 -1.821 1.101 -3.938 1.232 -2.541 ML 19 17 6 22 6 1 10 73 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 9 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 6 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 11 74 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 11 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 61 A U - - MP 24 23 6 28 4 2 12 72 92 -6.979 -7.186 -0.052 -5.600 -3.847 -2.864 -3.862 3.367 -4.227 -5.295 0.076 -3.900 -3.751 1.018 -4.301 -0.331 -0.341 -4.473 -1.864 -2.692 ML 25 23 6 28 4 1 9 72 92 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 4 1 7 72 92 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 27 23 6 28 4 0 6 71 91 -4.568 -4.250 -2.265 -0.520 IL 28 28 5 28 4 1 11 73 93 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 29 29 6 29 3 1 10 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 30 29 6 32 3 1 11 69 89 -7.993 -0.020 -6.648 -1.540 -1.527 -2.276 1.634 D 31 29 6 32 3 0 5 68 88 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 10 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - g - - - ML 33 32 3 35 3 1 10 68 88 -7.993 -0.020 -6.648 0.593 -1.448 0.654 -0.858 D 34 32 3 35 3 0 4 67 87 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 9 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 36 35 3 38 3 1 9 67 87 -7.993 -0.020 -6.648 -1.540 -1.527 -2.276 1.634 D 37 35 3 38 3 0 4 66 86 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 8 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 39 38 3 41 3 1 8 66 86 -7.993 -0.020 -6.648 -1.643 -2.873 1.737 -2.260 D 40 38 3 41 3 0 3 65 85 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 7 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 42 41 3 44 3 1 8 65 85 -7.993 -0.020 -6.648 1.731 -2.431 -2.057 -1.979 D 43 41 3 44 3 0 3 64 84 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 7 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 45 44 3 47 3 1 7 64 84 -8.382 -0.018 -6.700 -1.540 -1.527 -2.276 1.634 D 46 44 3 47 3 0 3 63 82 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 6 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 60 - A - - MR 48 47 3 50 3 1 6 63 83 -8.382 -0.018 -6.700 1.731 -2.431 -2.057 -1.979 D 49 47 3 50 3 0 1 61 81 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 5 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 59 - G - - MR 51 50 3 53 3 1 6 62 82 -8.382 -0.018 -6.700 -1.643 -2.873 1.737 -2.260 D 52 50 3 53 3 0 1 61 80 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 4 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 58 - U - - MR 54 53 3 56 3 1 5 61 81 -8.382 -0.018 -6.700 -1.540 -1.527 -2.276 1.634 D 55 53 3 56 3 0 0 60 79 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 4 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 57 - C - - MR 57 56 3 59 5 1 5 60 80 -7.119 -0.038 -6.934 -7.147 -8.038 -1.812 1.643 -2.638 -1.212 D 58 56 3 59 5 0 0 59 78 -5.352 -0.707 -2.978 -4.409 -2.404 IR 59 59 3 59 5 1 3 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 56 G U - - MP 60 59 3 64 6 2 6 59 79 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -3.655 -2.413 -3.825 1.110 -4.573 -5.297 -0.171 -3.843 -3.476 1.305 -4.000 3.123 -0.528 -4.497 -2.113 -2.517 ML 61 59 3 64 6 1 2 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 3 64 6 1 2 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 3 64 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 3 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 3 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 55 a u - - MP 66 65 6 70 6 2 6 57 77 -4.202 -9.059 -0.100 -7.835 -8.115 -8.510 -2.981 -2.483 -3.080 2.743 -3.173 -4.090 0.783 -3.275 -3.086 1.359 -3.621 -0.272 0.470 -3.343 -1.031 0.401 ML 67 65 6 70 6 1 2 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 2 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 3 56 76 -3.183 -3.446 -0.453 -5.101 -5.878 -5.538 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 3 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 54 A U - - MP 72 71 6 76 6 2 5 55 74 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -3.847 -2.864 -3.862 3.367 -4.227 -5.295 0.076 -3.900 -3.751 1.018 -4.301 -0.331 -0.341 -4.473 -1.864 -2.692 ML 73 71 6 76 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 2 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 2 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 53 G C - - MP 78 77 6 82 6 2 4 53 72 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -3.835 0.032 -3.874 0.759 -4.404 -4.320 -0.023 -4.270 -3.813 3.298 -4.200 -0.384 -0.299 -3.773 -1.945 -2.843 ML 79 77 6 82 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 2 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 2 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 52 C G - - MP 84 83 6 88 4 2 3 51 70 -6.979 -7.186 -0.052 -5.600 -4.618 -4.530 -4.296 -0.756 -2.999 -4.699 3.572 -3.816 -4.348 -0.525 -4.601 -2.478 0.508 -4.683 -0.707 -3.185 ML 85 83 6 88 4 1 1 51 71 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 87 83 6 88 4 0 0 50 70 -4.568 -4.250 -2.265 -0.520 IL 88 88 5 88 4 1 1 53 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 89 89 6 89 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - A - - - ML 90 89 6 92 3 1 2 49 68 -7.993 -0.020 -6.648 1.180 -1.486 -0.224 -0.940 D 91 89 6 92 3 0 0 47 67 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - A - - - ML 93 92 3 95 3 1 2 47 67 -7.993 -0.020 -6.648 1.731 -2.431 -2.057 -1.979 D 94 92 3 95 3 0 0 46 66 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - - - ML 96 95 3 98 3 1 2 46 66 -7.993 -0.020 -6.648 1.731 -2.431 -2.057 -1.979 D 97 95 3 98 3 0 0 45 64 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - U - - - ML 99 98 3 101 3 1 1 45 65 -8.382 -0.018 -6.700 -0.046 -0.893 -1.270 1.055 D 100 98 3 101 3 0 0 44 63 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 51 - C - - MR 102 101 3 104 3 1 1 44 64 -8.382 -0.018 -6.700 -1.812 1.643 -2.638 -1.212 D 103 101 3 104 3 0 0 43 62 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 50 - A - - MR 105 104 3 107 3 1 1 43 63 -8.382 -0.018 -6.700 1.731 -2.431 -2.057 -1.979 D 106 104 3 107 3 0 0 42 61 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 49 - A - - MR 108 107 3 110 3 1 1 42 62 -8.382 -0.018 -6.700 1.731 -2.431 -2.057 -1.979 D 109 107 3 110 3 0 0 41 60 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 48 - A - - MR 111 110 3 113 3 1 1 41 61 -8.382 -0.018 -6.700 1.731 -2.431 -2.057 -1.979 D 112 110 3 113 3 0 0 40 59 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 47 - U - - MR 114 113 3 116 5 1 1 40 60 -7.119 -0.038 -6.934 -7.147 -8.038 -1.540 -1.527 -2.276 1.634 D 115 113 3 116 5 0 0 39 58 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 22 46 C G - - MP 117 116 3 121 6 2 2 39 58 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -4.618 -4.530 -4.296 -0.756 -2.999 -4.699 3.572 -3.816 -4.348 -0.525 -4.601 -2.478 0.508 -4.683 -0.707 -3.185 ML 118 116 3 121 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 23 45 A U - - MP 123 122 6 127 6 2 2 37 56 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -3.847 -2.864 -3.862 3.367 -4.227 -5.295 0.076 -3.900 -3.751 1.018 -4.301 -0.331 -0.341 -4.473 -1.864 -2.692 ML 124 122 6 127 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 24 44 G C - - MP 129 128 6 133 6 2 2 35 54 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -4.803 -3.123 -4.908 0.159 -5.319 -4.718 -0.668 -5.155 -4.368 3.653 -4.700 -0.824 -1.052 -4.508 -2.709 -3.784 ML 130 128 6 133 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 25 43 U A - - MP 135 134 6 139 6 2 2 33 52 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -4.262 -4.089 -4.093 -0.379 -3.019 -4.650 1.311 -3.720 -4.097 -0.136 -4.466 -1.986 3.361 -4.411 -0.693 -2.914 ML 136 134 6 139 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 26 42 A U - - MP 141 140 6 145 6 2 2 31 50 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -3.847 -2.864 -3.862 3.367 -4.227 -5.295 0.076 -3.900 -3.751 1.018 -4.301 -0.331 -0.341 -4.473 -1.864 -2.692 ML 142 140 6 145 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 30 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 27 41 U A - - MP 147 146 6 151 4 2 2 29 48 -6.979 -7.186 -0.052 -5.600 -4.262 -4.089 -4.093 -0.379 -3.019 -4.650 1.311 -3.720 -4.097 -0.136 -4.466 -1.986 3.361 -4.411 -0.693 -2.914 ML 148 146 6 151 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 29 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 28 48 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 31 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 28 - G - - - ML 153 152 6 155 3 1 1 27 46 -7.993 -0.020 -6.648 -1.643 -2.873 1.737 -2.260 D 154 152 6 155 3 0 0 26 45 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - A - - - ML 156 155 3 158 3 1 1 26 45 -7.993 -0.020 -6.648 1.731 -2.431 -2.057 -1.979 D 157 155 3 158 3 0 0 24 44 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 30 - a - - - ML 159 158 3 161 3 1 1 24 43 -7.993 -0.218 -2.875 0.824 -1.410 0.367 -0.827 D 160 158 3 161 3 0 0 23 42 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 31 - U - - - ML 162 161 3 164 3 1 1 23 42 -7.799 -0.023 -6.453 -1.186 -1.237 -1.903 1.520 D 163 161 3 164 3 0 0 22 41 -7.306 -2.819 -0.231 IL 164 164 3 164 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - A - - - ML 165 164 3 167 3 1 1 22 41 -7.799 -0.023 -6.453 1.086 -1.302 -0.194 -0.742 D 166 164 3 167 3 0 0 21 40 -7.306 -0.545 -1.698 IL 167 167 3 167 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - A - - - ML 168 167 3 170 3 1 1 21 40 -7.993 -0.020 -6.648 1.731 -2.431 -2.057 -1.979 D 169 167 3 170 3 0 0 20 39 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - A - - - ML 171 170 3 173 3 1 1 20 39 -7.993 -0.328 -2.325 1.731 -2.431 -2.057 -1.979 D 172 170 3 173 3 0 0 19 38 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 35 - u - - - ML 174 173 3 176 3 1 1 19 38 -7.690 -0.025 -6.344 0.171 -0.702 -0.995 0.814 D 175 173 3 176 3 0 0 17 36 -7.654 -3.167 -0.178 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 36 - u - - - ML 177 176 3 179 3 1 1 18 36 -7.690 -0.025 -6.344 -0.506 0.134 -1.246 0.829 D 178 176 3 179 3 0 0 16 35 -7.654 -3.167 -0.178 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 37 - c - - - ML 180 179 3 182 3 1 1 16 35 -7.690 -0.025 -6.344 -0.517 0.564 -1.277 0.496 D 181 179 3 182 3 0 0 15 34 -7.654 -0.410 -2.046 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 38 - A - - - ML 183 182 3 185 3 1 1 15 33 -7.993 -0.020 -6.648 1.180 -1.486 -0.224 -0.940 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 39 - U - - - ML 186 185 3 188 3 1 1 13 31 -7.993 -0.020 -6.648 -1.540 -1.527 -2.276 1.634 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 40 - G - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -1.643 -2.873 1.737 -2.260 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME snoZ39 ACC RF00341 DESC Small nucleolar RNA Z39 LENG 63 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 16:48:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00341/CM NSEQ 5 EFFN 2.661133 CKSUM 1742548023 STATS LOCAL MSV -8.5663 0.71914 STATS LOCAL VITERBI -8.8037 0.71914 STATS LOCAL FORWARD -3.3595 0.71914 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.14302 1.78215 1.45573 1.27425 1.38629 1.38629 1.38629 1.38629 0.16687 3.96671 2.00430 1.46634 0.26236 0.00000 * 1 2.59332 3.45599 0.16792 3.03140 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04378 3.84362 3.84362 1.46634 0.26236 0.24767 1.51694 2 2.63390 1.12810 2.39342 0.66702 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 3 0.94990 2.51389 0.82639 2.35766 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 4 2.77345 0.56467 2.55570 1.23316 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 5 0.28617 2.95346 1.96364 2.87595 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 6 2.75042 2.69070 3.27312 0.18588 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 7 0.95135 2.53996 0.87460 2.13806 7 g - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 8 2.75042 2.69070 3.27312 0.18588 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 9 2.85175 3.74949 0.12474 3.32417 9 G - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 10 0.13198 3.38809 3.09780 3.10743 10 A - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 11 2.75042 2.69070 3.27312 0.18588 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 12 1.98839 3.04929 0.27301 2.90755 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 13 0.68862 2.31078 1.63172 1.59477 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.19843 1.82604 3.96671 0.22055 1.61989 1.09861 0.40547 14 0.28652 2.95185 1.96330 2.87369 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 15 1.73705 2.87975 0.35174 2.74342 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 16 3.34293 0.20657 3.13889 2.22594 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 17 0.51397 2.57299 1.53466 2.20685 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 18 0.13198 3.38809 3.09779 3.10743 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 19 0.13198 3.38809 3.09780 3.10743 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 20 1.44990 2.11196 2.38553 0.59355 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 21 3.34729 0.20616 3.14106 2.22673 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 22 0.28540 2.95711 1.96440 2.88104 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 23 2.68168 3.39044 0.14848 3.32865 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 24 3.14155 2.03235 2.91011 0.25969 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 25 0.28552 2.95653 1.96428 2.88024 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 26 3.13976 2.03222 2.90927 0.25987 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 27 2.85175 3.74949 0.12474 3.32417 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 28 0.13198 3.38809 3.09780 3.10743 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 29 0.77461 2.51060 1.08714 2.11429 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.19843 3.96671 1.82604 1.46634 0.26236 1.09861 0.40547 30 2.45665 2.44703 2.96722 0.25324 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04515 3.81343 3.81343 1.46634 0.26236 2.35186 0.10003 31 0.58113 2.41107 1.51527 2.03054 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04515 3.81343 3.81343 1.46634 0.26236 0.21119 1.65871 32 0.13198 3.38809 3.09780 3.10743 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 33 0.13198 3.38809 3.09780 3.10743 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.28935 3.96671 1.45967 1.46634 0.26236 1.09861 0.40547 34 1.28162 1.93595 2.15364 0.77205 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04934 3.72670 3.72670 1.46634 0.26236 2.65806 0.07266 35 1.83240 1.26359 2.35641 0.77095 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04934 3.72670 3.72670 1.46634 0.26236 2.65806 0.07266 36 1.84459 0.92841 2.38614 1.03635 37 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04934 3.72670 3.72670 1.46634 0.26236 0.15102 1.96491 37 0.51397 2.57299 1.53466 2.20685 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 38 2.75042 2.69070 3.27312 0.18588 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 39 2.85175 3.74949 0.12474 3.32417 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 40 0.29466 3.09627 1.86901 2.88733 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 41 3.10529 2.27584 2.76704 0.23619 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 42 0.29435 3.09806 1.86924 2.88942 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 43 3.53070 0.17609 3.23100 2.37891 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 44 3.11315 2.27693 2.77019 0.23535 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 45 2.51195 3.31792 0.17614 3.11985 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 46 2.75042 2.69070 3.27312 0.18588 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 47 0.13198 3.38809 3.09780 3.10743 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 48 0.13198 3.38809 3.09780 3.10743 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 49 0.13198 3.38809 3.09780 3.10743 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 50 3.02667 0.16844 3.60236 2.53471 51 C - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 51 2.50412 3.30667 0.17810 3.10663 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 52 2.97278 0.30529 2.69724 1.93419 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 53 3.10028 2.27514 2.76503 0.23673 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 54 2.42498 1.86991 2.12065 0.45031 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 55 3.12794 2.03256 2.85085 0.26475 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 56 3.02667 0.16844 3.60236 2.53471 57 C - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 57 2.75042 2.69070 3.27312 0.18588 58 U - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 58 2.85175 3.74949 0.12474 3.32417 59 G - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 59 0.13198 3.38809 3.09780 3.10743 60 A - - - 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 60 3.08768 2.27337 2.75994 0.23809 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 61 1.99115 2.71309 0.33183 2.53177 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 62 2.56992 1.15599 2.31397 0.67365 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 63 0.75694 2.54728 1.02029 2.38471 64 a - - > 1.38629 1.38629 1.38629 1.38629 0.01949 3.94759 * 1.46634 0.26236 0.00000 * //