INFERNAL1/a [1.1.5 | Sep 2023] NAME snoR60 ACC RF00339 DESC Small nucleolar RNA snoR60 STATES 220 NODES 70 CLEN 72 W 92 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 00:03:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00339/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 2.094727 CKSUM 1389420014 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.00 NC 39.80 EFP7GF -9.5787 0.71871 ECMLC 0.67086 -5.55949 2.84417 1600000 336979 0.003561 ECMGC 0.41292 -17.14900 -3.91479 1600000 94473 0.004234 ECMLI 0.63835 -3.75387 4.56793 1600000 243353 0.004931 ECMGI 0.43880 -11.40922 0.21686 1600000 65711 0.006087 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 92 114 -7.014 -7.221 -0.051 -5.635 IL 1 1 2 1 4 1 29 95 117 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 29 94 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 5 1 29 92 114 -7.147 -0.038 -6.963 -7.175 -8.067 0.408 0.091 -1.048 0.169 D 4 2 3 5 5 0 22 91 112 -4.959 -0.803 -4.221 -2.596 -2.508 IL 5 5 3 5 5 1 27 92 114 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 77 u a - - MP 6 5 3 10 6 2 29 91 113 -9.133 -9.072 -0.021 -7.849 -8.129 -8.524 -1.911 -2.028 -2.089 1.059 -1.952 -2.927 1.623 -2.348 -1.261 1.108 -2.696 -0.110 1.884 -2.227 0.422 -0.722 ML 7 5 3 10 6 1 24 89 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 23 89 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 19 87 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 26 91 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 26 90 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 76 G C - - MP 12 11 6 16 6 2 27 89 111 -9.133 -9.072 -0.021 -7.849 -8.129 -8.524 -4.376 -2.896 -4.429 0.505 -5.097 -4.629 -0.449 -4.787 -4.161 3.508 -4.523 0.143 -0.744 -4.214 -2.460 -3.322 ML 13 11 6 16 6 1 23 88 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 22 87 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 18 85 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 25 89 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 25 88 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 75 C G - - MP 18 17 6 22 6 2 25 87 109 -9.133 -9.072 -0.021 -7.849 -8.129 -8.524 -4.687 -4.605 -4.354 -0.825 -3.042 -4.748 3.591 -3.866 -4.408 -0.604 -4.654 -2.554 0.458 -4.747 -0.752 -3.243 ML 19 17 6 22 6 1 22 86 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 21 86 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 18 84 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 23 87 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 23 86 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 74 A U - - MP 24 23 6 28 4 2 24 85 107 -7.014 -7.221 -0.051 -5.635 -3.905 -2.908 -3.915 3.401 -4.310 -5.384 -0.003 -3.949 -3.802 0.956 -4.355 -0.365 -0.419 -4.552 -1.943 -2.742 ML 25 23 6 28 4 1 21 85 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 4 1 19 84 106 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 27 23 6 28 4 0 18 83 105 -4.568 -4.250 -2.265 -0.520 IL 28 28 5 28 4 1 23 86 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 29 29 6 29 3 1 22 85 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 30 29 6 32 3 1 22 83 105 -8.026 -0.020 -6.680 0.703 -0.880 -0.594 0.222 D 31 29 6 32 3 0 17 81 103 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 21 84 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 33 32 3 35 3 1 21 82 104 -8.026 -0.020 -6.680 1.457 -1.765 -0.871 -1.271 D 34 32 3 35 3 0 16 80 102 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 20 83 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 36 35 3 38 3 1 20 81 103 -8.026 -0.020 -6.680 -1.601 -1.577 -2.340 1.650 D 37 35 3 38 3 0 15 79 101 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 20 82 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 39 38 3 41 3 1 19 80 101 -8.026 -0.020 -6.680 -1.712 -2.952 1.752 -2.340 D 40 38 3 41 3 0 15 78 100 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 19 81 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 42 41 3 44 3 1 18 79 100 -8.026 -0.020 -6.680 1.744 -2.496 -2.116 -2.051 D 43 41 3 44 3 0 14 77 99 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 18 80 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 45 44 3 47 3 1 17 78 99 -8.026 -0.020 -6.680 -1.088 -0.742 -1.825 1.406 D 46 44 3 47 3 0 13 76 98 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 17 79 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 48 47 3 50 3 1 17 77 98 -8.026 -0.020 -6.680 -1.712 -2.952 1.752 -2.340 D 49 47 3 50 3 0 13 75 97 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 16 78 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 51 50 3 53 3 1 16 76 97 -8.026 -0.020 -6.680 1.744 -2.496 -2.116 -2.051 D 52 50 3 53 3 0 12 74 96 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 16 77 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - g - - - ML 54 53 3 56 3 1 15 75 96 -4.203 -0.273 -3.083 -0.096 -0.992 0.525 0.166 D 55 53 3 56 3 0 11 73 95 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 15 76 97 -1.608 -0.686 -4.308 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - c - - - ML 57 56 3 59 3 1 15 73 95 -7.861 -0.022 -6.515 -0.647 0.623 -1.425 0.535 D 58 56 3 59 3 0 11 72 94 -7.206 -0.593 -1.598 IL 59 59 3 59 3 1 14 75 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - U - - - ML 60 59 3 62 3 1 14 72 94 -8.026 -0.020 -6.680 -1.601 -1.577 -2.340 1.650 D 61 59 3 62 3 0 8 71 92 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 13 74 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - U - - - ML 63 62 3 65 3 1 14 71 93 -8.026 -0.020 -6.680 -0.522 -1.042 -1.550 1.308 D 64 62 3 65 3 0 8 70 91 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 12 73 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - A - - - ML 66 65 3 68 3 1 13 70 92 -8.026 -0.020 -6.680 1.744 -2.496 -2.116 -2.051 D 67 65 3 68 3 0 7 69 90 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 12 72 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - C - - - ML 69 68 3 71 3 1 12 69 91 -8.026 -0.020 -6.680 -1.892 1.662 -2.720 -1.275 D 70 68 3 71 3 0 6 68 89 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 11 71 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - U - - - ML 72 71 3 74 3 1 11 68 90 -8.026 -0.020 -6.680 -1.601 -1.577 -2.340 1.650 D 73 71 3 74 3 0 5 67 88 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 10 70 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - c - - - ML 75 74 3 77 3 1 11 67 89 -8.026 -0.020 -6.680 -0.847 0.884 -1.656 0.358 D 76 74 3 77 3 0 5 66 87 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 9 69 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - G - - - ML 78 77 3 80 3 1 10 66 88 -8.026 -0.020 -6.680 -1.712 -2.952 1.752 -2.340 D 79 77 3 80 3 0 4 65 86 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 9 68 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - - - ML 81 80 3 83 3 1 9 65 87 -8.026 -0.020 -6.680 -1.712 -2.952 1.752 -2.340 D 82 80 3 83 3 0 3 64 85 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 8 67 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - A - - - ML 84 83 3 86 3 1 9 64 86 -8.026 -0.020 -6.680 1.744 -2.496 -2.116 -2.051 D 85 83 3 86 3 0 2 63 84 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 7 66 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - U - - - ML 87 86 3 89 3 1 8 63 85 -8.026 -0.020 -6.680 -1.601 -1.577 -2.340 1.650 D 88 86 3 89 3 0 2 62 83 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 7 65 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - U - - - ML 90 89 3 92 3 1 7 62 84 -8.026 -0.020 -6.680 -1.601 -1.577 -2.340 1.650 D 91 89 3 92 3 0 1 61 82 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 6 64 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - C - - - ML 93 92 3 95 3 1 7 61 83 -8.026 -0.020 -6.680 -1.892 1.662 -2.720 -1.275 D 94 92 3 95 3 0 0 59 81 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 5 63 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 96 95 3 98 3 1 6 60 82 -8.026 -0.020 -6.680 -1.892 1.662 -2.720 -1.275 D 97 95 3 98 3 0 0 58 80 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 4 62 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - C - - - ML 99 98 3 101 3 1 5 59 81 -8.026 -0.020 -6.680 -1.892 1.662 -2.720 -1.275 D 100 98 3 101 3 0 0 57 79 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 4 61 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - C - - - ML 102 101 3 104 3 1 5 58 80 -8.026 -0.020 -6.680 -1.892 1.662 -2.720 -1.275 D 103 101 3 104 3 0 0 56 78 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 3 60 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - U - - - ML 105 104 3 107 3 1 4 57 79 -8.026 -0.020 -6.680 -1.601 -1.577 -2.340 1.650 D 106 104 3 107 3 0 0 55 77 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 3 59 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - U - - - ML 108 107 3 110 3 1 4 56 78 -8.026 -0.020 -6.680 -1.601 -1.577 -2.340 1.650 D 109 107 3 110 3 0 0 54 76 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 2 58 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - C - - - ML 111 110 3 113 3 1 3 55 76 -8.026 -0.020 -6.680 -1.892 1.662 -2.720 -1.275 D 112 110 3 113 3 0 0 53 75 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 2 57 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - A - - - ML 114 113 3 116 3 1 3 54 75 -8.026 -0.020 -6.680 1.744 -2.496 -2.116 -2.051 D 115 113 3 116 3 0 0 52 74 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 56 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - G - - - ML 117 116 3 119 3 1 2 53 74 -8.026 -0.020 -6.680 -0.091 -1.803 1.229 -1.214 D 118 116 3 119 3 0 0 51 73 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 54 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - g - - - ML 120 119 3 122 3 1 2 52 73 -8.026 -0.020 -6.680 0.281 -1.599 0.969 -1.008 D 121 119 3 122 3 0 0 50 72 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 53 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - A - - - ML 123 122 3 125 3 1 2 51 72 -8.026 -0.020 -6.680 1.184 -1.197 -1.236 -0.206 D 124 122 3 125 3 0 0 49 71 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 52 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - C - - - ML 126 125 3 128 3 1 1 50 71 -8.026 -0.020 -6.680 -1.892 1.662 -2.720 -1.275 D 127 125 3 128 3 0 0 48 70 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 51 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - - - ML 129 128 3 131 3 1 1 49 70 -8.026 -0.020 -6.680 1.187 -1.200 -1.238 -0.212 D 130 128 3 131 3 0 0 47 69 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 50 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - U - - - ML 132 131 3 134 3 1 1 48 69 -8.026 -0.020 -6.680 -1.601 -1.577 -2.340 1.650 D 133 131 3 134 3 0 0 46 67 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 49 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - u - - - ML 135 134 3 137 3 1 1 47 68 -2.276 -0.351 -6.680 -0.253 0.350 -1.243 0.550 D 136 134 3 137 3 0 0 44 66 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 47 68 -2.018 -0.484 -4.718 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - A - - - ML 138 137 3 140 3 1 1 45 67 -2.760 -0.247 -6.680 1.149 -1.163 -1.213 -0.145 D 139 137 3 140 3 0 0 42 63 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 46 68 -1.244 -0.877 -4.905 0.000 0.000 0.000 0.000 [ MATL 43 ] 47 - U - - - ML 141 140 3 143 3 1 1 41 61 -8.026 -0.020 -6.680 -1.601 -1.577 -2.340 1.650 D 142 140 3 143 3 0 0 40 60 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - G - - - ML 144 143 3 146 3 1 1 40 60 -8.026 -0.020 -6.680 -1.712 -2.952 1.752 -2.340 D 145 143 3 146 3 0 0 39 59 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - G - - - ML 147 146 3 149 3 1 1 39 59 -8.026 -0.020 -6.680 -1.712 -2.952 1.752 -2.340 D 148 146 3 149 3 0 0 38 57 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - g - - - ML 150 149 3 152 3 1 1 38 58 -8.026 -0.020 -6.680 0.453 -1.526 0.816 -0.935 D 151 149 3 152 3 0 0 37 56 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - U - - - ML 153 152 3 155 3 1 1 37 56 -8.026 -0.020 -6.680 -1.601 -1.577 -2.340 1.650 D 154 152 3 155 3 0 0 36 55 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - G - - - ML 156 155 3 158 3 1 1 36 55 -8.026 -0.020 -6.680 -1.712 -2.952 1.752 -2.340 D 157 155 3 158 3 0 0 35 54 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - A - - - ML 159 158 3 161 3 1 1 35 54 -8.026 -0.020 -6.680 1.414 -1.506 -1.449 -0.698 D 160 158 3 161 3 0 0 34 53 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 54 - U - - - ML 162 161 3 164 3 1 1 34 53 -8.026 -0.020 -6.680 -1.601 -1.577 -2.340 1.650 D 163 161 3 164 3 0 0 33 52 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 55 - G - - - ML 165 164 3 167 3 1 1 33 52 -8.026 -0.020 -6.680 -1.712 -2.952 1.752 -2.340 D 166 164 3 167 3 0 0 32 51 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 56 - c - - - ML 168 167 3 170 3 1 1 32 51 -8.026 -0.020 -6.680 -0.848 0.885 -1.656 0.357 D 169 167 3 170 3 0 0 31 50 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 57 - A - - - ML 171 170 3 173 3 1 1 31 50 -8.026 -0.020 -6.680 1.744 -2.496 -2.116 -2.051 D 172 170 3 173 3 0 0 29 49 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 58 - A - - - ML 174 173 3 176 3 1 1 30 49 -8.026 -0.020 -6.680 1.276 -1.572 -0.403 -1.042 D 175 173 3 176 3 0 0 28 47 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - A - - - ML 177 176 3 179 3 1 1 28 47 -2.546 -0.288 -6.680 1.422 -1.520 -1.459 -0.719 D 178 176 3 179 3 0 0 26 45 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 29 48 -1.933 -0.519 -4.633 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - u - - - ML 180 179 3 182 3 1 1 27 46 -8.026 -0.020 -6.680 -0.276 -0.019 -1.245 0.820 D 181 179 3 182 3 0 0 26 45 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - u - - - ML 183 182 3 185 3 1 1 26 45 -8.026 -0.020 -6.680 -0.760 0.313 -1.534 0.865 D 184 182 3 185 3 0 0 25 44 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - C - - - ML 186 185 3 188 3 1 1 25 43 -8.026 -0.020 -6.680 -1.892 1.662 -2.720 -1.275 D 187 185 3 188 3 0 0 24 43 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 64 - g - - - ML 189 188 3 191 3 1 1 23 42 -8.026 -0.020 -6.680 0.281 -1.599 0.969 -1.008 D 190 188 3 191 3 0 0 22 41 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 65 - A - - - ML 192 191 3 194 3 1 1 22 41 -8.026 -0.020 -6.680 1.744 -2.496 -2.116 -2.051 D 193 191 3 194 3 0 0 21 40 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - G - - - ML 195 194 3 197 3 1 1 21 40 -8.026 -0.020 -6.680 -1.712 -2.952 1.752 -2.340 D 196 194 3 197 3 0 0 20 39 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - U - - - ML 198 197 3 200 3 1 1 20 39 -8.026 -0.020 -6.680 -0.399 -0.544 -1.365 1.116 D 199 197 3 200 3 0 0 19 38 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 68 - U - - - ML 201 200 3 203 3 1 1 19 37 -8.026 -0.020 -6.680 -1.601 -1.577 -2.340 1.650 D 202 200 3 203 3 0 0 18 37 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 69 - U - - - ML 204 203 3 206 3 1 1 17 36 -8.026 -0.020 -6.680 -0.933 -0.380 -1.678 1.260 D 205 203 3 206 3 0 0 17 36 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 70 - C - - - ML 207 206 3 209 3 1 1 16 35 -8.026 -0.020 -6.680 -1.892 1.662 -2.720 -1.275 D 208 206 3 209 3 0 0 16 34 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 71 - U - - - ML 210 209 3 212 3 1 1 15 33 -8.026 -0.020 -6.680 -1.601 -1.577 -2.340 1.650 D 211 209 3 212 3 0 0 15 33 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 72 - G - - - ML 213 212 3 215 3 1 1 13 31 -8.026 -0.020 -6.680 -1.712 -2.952 1.752 -2.340 D 214 212 3 215 3 0 0 13 32 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 73 - A - - - ML 216 215 3 218 2 1 1 1 1 * 0.000 1.744 -2.496 -2.116 -2.051 D 217 215 3 218 2 0 0 0 0 * 0.000 IL 218 218 3 218 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 69 ] - - - - - - E 219 218 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME snoR60 ACC RF00339 DESC Small nucleolar RNA snoR60 LENG 72 MAXL 158 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 00:03:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00339/CM NSEQ 10 EFFN 2.250977 CKSUM 1389420014 STATS LOCAL MSV -8.6043 0.71871 STATS LOCAL VITERBI -9.2792 0.71871 STATS LOCAL FORWARD -3.6949 0.71871 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.35222 1.52682 1.45251 1.23744 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 0.00000 * 1 1.09964 1.31438 2.13099 1.27423 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 2 1.72776 1.48308 1.48204 0.99911 2 u - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 3 2.28872 2.98555 0.23411 2.86790 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 4 3.15456 0.25111 2.92204 2.07478 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 5 0.36049 2.71931 1.79377 2.65333 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 6 0.89153 2.01202 1.80447 1.23205 6 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 7 0.36152 2.65495 2.00562 2.31762 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 8 2.56879 2.53979 3.08448 0.22473 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 9 2.65488 3.52642 0.15628 3.10195 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 10 0.16253 3.19529 2.92369 2.89463 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 11 2.18722 1.92087 2.70004 0.39439 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 12 2.65488 3.52642 0.15628 3.10195 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 13 0.16253 3.19529 2.92369 2.89463 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 14 1.46331 2.09352 1.00701 1.27308 14 g - - _ 1.38629 1.38629 1.38629 1.38629 0.23748 2.60078 1.98654 0.45680 1.00323 1.09861 0.40547 15 1.86304 0.93716 2.40660 1.01352 16 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04464 3.82446 3.82446 1.46634 0.26236 0.24746 1.51770 16 2.56879 2.53979 3.08448 0.22473 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 17 1.77300 2.14252 2.50161 0.46066 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 18 0.16253 3.19529 2.92369 2.89463 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 19 2.79294 0.21246 3.36843 2.34627 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 20 2.56879 2.53979 3.08448 0.22473 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 21 2.01078 0.75362 2.57629 1.14130 22 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 22 2.65488 3.52642 0.15628 3.10195 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 23 2.65488 3.52642 0.15628 3.10195 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 24 0.16253 3.19529 2.92369 2.89463 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 25 2.56879 2.53979 3.08448 0.22473 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 26 2.56879 2.53979 3.08448 0.22473 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 27 2.79294 0.21246 3.36843 2.34627 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 28 2.79294 0.21246 3.36843 2.34627 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 29 2.79294 0.21246 3.36843 2.34627 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 30 2.79294 0.21246 3.36843 2.34627 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 31 2.56879 2.53979 3.08448 0.22473 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 32 2.56879 2.53979 3.08448 0.22473 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 33 2.79294 0.21246 3.36843 2.34627 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 34 0.16253 3.19529 2.92369 2.89463 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 35 1.46216 2.68182 0.51553 2.27653 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 36 1.19321 2.53420 0.69673 2.12681 37 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 37 0.55123 2.24242 2.27203 1.53966 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 38 2.79294 0.21246 3.36843 2.34627 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 39 0.54908 2.24468 2.27359 1.54357 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 40 2.56879 2.53979 3.08448 0.22473 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 41 1.57419 1.13042 2.27198 1.00289 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.29992 1.42769 3.94993 0.15348 1.94994 1.09861 0.40547 42 0.57603 2.21744 2.25486 1.49566 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.21708 1.73797 3.94993 0.77025 0.62157 1.09861 0.40547 43 2.56879 2.53979 3.08448 0.22473 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 44 2.65488 3.52642 0.15628 3.10195 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 45 2.65488 3.52642 0.15628 3.10195 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 46 1.06943 2.48103 0.80436 2.07336 50 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 47 2.56879 2.53979 3.08448 0.22473 51 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 48 2.65488 3.52642 0.15628 3.10195 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 49 0.39036 2.46601 2.43009 1.89555 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 50 2.56879 2.53979 3.08448 0.22473 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 51 2.65488 3.52642 0.15628 3.10195 55 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 52 2.01093 0.75330 2.57646 1.14168 56 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 53 0.16253 3.19529 2.92369 2.89463 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 54 0.48733 2.51539 1.66816 2.15146 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 55 0.38483 2.47619 2.43730 1.91072 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.24943 1.60196 3.94993 0.18126 1.79710 1.09861 0.40547 56 1.59023 1.39376 2.27243 0.80986 61 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 57 1.94507 1.15829 2.48522 0.77720 62 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 58 2.79294 0.21246 3.36843 2.34627 63 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 59 1.19321 2.53420 0.69673 2.12681 64 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 60 0.16253 3.19529 2.92369 2.89463 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 61 2.65488 3.52642 0.15628 3.10195 66 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 62 1.68075 1.77537 2.36184 0.59766 67 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 63 2.56879 2.53979 3.08448 0.22473 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 64 2.07317 1.65724 2.59181 0.49649 69 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 65 2.79294 0.21246 3.36843 2.34627 70 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 66 2.56879 2.53979 3.08448 0.22473 71 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 67 2.65488 3.52642 0.15628 3.10195 72 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 68 0.16253 3.19529 2.92369 2.89463 73 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 69 2.88061 2.08271 2.53128 0.30144 74 U - - > 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 70 2.35175 3.08859 0.21719 2.91043 75 G - - > 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 71 3.08586 0.31444 2.80603 1.80993 76 C - - > 1.38629 1.38629 1.38629 1.38629 0.03927 3.94993 3.94993 1.46634 0.26236 1.09861 0.40547 72 1.22980 1.77409 1.20745 1.43107 77 g - - > 1.38629 1.38629 1.38629 1.38629 0.01983 3.93048 * 1.46634 0.26236 0.00000 * //