# STOCKHOLM 1.0
#=GF ID snoZ112
#=GF AC RF00337
#=GF DE Small nucleolar RNA Z112
#=GF AU Moxon SJ; 0000-0003-4644-1816
#=GF GA 40.0
#=GF NC 39.9
#=GF TC 40.2
#=GF SE Moxon SJ, INFERNAL
#=GF SS Predicted; PFOLD
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 19.00 -Z 2958934 CM SEQDB
#=GF CL CL00062
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF RN [1]
#=GF RM 12136108
#=GF RT A novel gene organization: intronic snoRNA gene clusters from Oryza
#=GF RT sativa.
#=GF RA Liang D, Zhou H, Zhang P, Chen YQ, Chen X, Chen CL, Qu LH
#=GF RL Nucleic Acids Res 2002;30:3262-3272.
#=GF RN [2]
#=GF RM 12007400
#=GF RT Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse
#=GF RT cellular functions.
#=GF RA Kiss T
#=GF RL Cell 2002;109:145-148.
#=GF CC Z112 is a member of the C/D class of snoRNA which contain the C (UGAUGA)
#=GF CC and D (CUGA) box motifs. Most of the members of the box C/D family
#=GF CC function in directing site-specific 2'-O-methylation of substrate RNAs
#=GF CC [1,2].
#=GF WK Small_nucleolar_RNA_Z112
#=GF SQ 6

AJ489963.1/1-178           GUCCCGGUGAGGAAUCUAAGACC-----AUAGGAAGUGCCG------ACUUUAAACAGCAGCUGCUGGUCUCCUUUGCAAGUG-UCCAUCCUUCGACCAUAACCUUUGUGGUUUGGUCUUGGAUGGAGUACCCAUUUGCAAUUGGUUUAAUUCGGGUGU-GUGUGUGAUUUUAAACGGGUCUCU-GAGGGAC
AJ489964.1/1-182           GUCCCGGUGAGGAAUCUAAGACC-----AUAGGAAGUGCCGUAUGACACUUUAAACAGCAGCUGCUUUUCUCCUUUGCAAGUG-UCCAUCCUUCGACCAUAACCUUUGUGGUUUGGUCUUGGAUGGAGUACCCAUUUGCAAUUGGUUUAAUUCGGGUGU-GUGUG--AUUUUAAACGGGUCUCU-GAGGGAU
AJ320263.1/3-186           GUCCCAGUGAGGAUUCUAUGACC-----AUAGGAAGUGCCGUAUGACACUUUAAACAGCAGCUGCUUUUCUCAUUUGCAAGUG-UCCAUCCUUCGACCAUAACCUUUGUGGUUUGGUCUGGGAUGGAGUACCCAUUUGCAAUUGGUU-AAUUCAGCUGU-GUGUGUGAUUUUAAACGGGUCUCUUGAGGGAU
AY013245.2/64928-65111     GUCCCGGUGAGGAAUCUAAGACC-----AUAGGAAGUGCCGUAUGACACUUUAAACAGCAGCUGCUUUUCUCCUUUGCAAGUG-UCCAUCCUUCGACCAUAACCUUUGUGGUUUGGUCUUGGAUGGAGUACCCAUUUGCAAUUGGUUUAAUUCGGGUGU-GUGUGUGAUUUUAAACGGGUCUCU-GAGGGAU
AAAA02011059.1/20354-20171 GUCCCGGUGAGGAAUCUAAGACC-----AUAGGAAGUGCCGUAUGACACUUUAAACAGCAGCUGCUUUUCUCCUUUGCAAGUG-UCCAUCCUUCGACCAUAACCUUUGUGGUUUGGUCUGGGAUGGAGUACCCAUUUGCAAUUGGUUUAAUUCGACUGU-GUGUGUGAUUUUAAACGGGUCUCU-GAGGGAC
Y11048.1/873-1061          GUCCCAGUGAAGAUCCCAAGACCUACCGAUAGGAAGUGCCGUUUGACACUGCAAACAGCAGCUGCCUCUCUCAGCUGCAGGUGUUCCAUCCUUUGACCAUAACCUUUGUGGUUUGGUC-AGGCUGGAGCUCCCAUCUGCAGCUGUUU-GUUUCAGCUGUGGUGUGUGAUUUUAAUCGGGUCUCU-GAGGGAC
#=GC SS_cons               <<<<<------------------.....----------------------------------------------<<<<<<<<<.<<<<<<<---<<<<<-<<<<_____>>>>>>>>>-->>>>>>>----->>>>>>>>>------------------.------------------------.-->>>>>
#=GC RF                    guCCCgGUGAgGAaUCUAAGACC.....AUAGGAAGUGCCGUaUGACACUuUAAACAGCAGCUGCUuuUCUCcuuuGCaaguG.uCCauCCUUcGaCCaUaaCCUUUGUGGuuuGGuCUuGGauGGaGUACCCauuuGCaaUUGgUUUAAUUCgGcUGU.GUGUGUGAUUUUAAACGGGUCUCU.GAGGGac
//
