# STOCKHOLM 1.0
#=GF ID snoZ162
#=GF AC RF00329
#=GF DE Small nucleolar RNA Z162
#=GF AU Moxon SJ; 0000-0003-4644-1816
#=GF GA 45.0
#=GF NC 44.9
#=GF TC 45.1
#=GF SE Moxon SJ
#=GF SS Predicted; PFOLD; Moxon SJ
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 26.28 -Z 2958934 CM SEQDB
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF RN [1]
#=GF RM 12007400
#=GF RT Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse
#=GF RT cellular functions.
#=GF RA Kiss T
#=GF RL Cell 2002;109:145-148.
#=GF RN [2]
#=GF RM 12736310
#=GF RT The high diversity of snoRNAs in plants: identification and comparative
#=GF RT study of 120 snoRNA genes from Oryza sativa.
#=GF RA Chen CL, Liang D, Zhou H, Zhuo M, Chen YQ, Qu LH
#=GF RL Nucleic Acids Res 2003;31:2601-2613.
#=GF CC Z162 is a member of the C/D class of snoRNA which contain the C (UGAUGA)
#=GF CC and D (CUGA) box motifs. Most of the members of the box C/D family
#=GF CC function in directing site-specific 2'-O-methylation of substrate RNAs
#=GF CC [1].
#=GF WK Small_nucleolar_RNA_Z162
#=GF SQ 9

ABXC01001605.1/118086-117999 UUGGGCACAAUGAGGAGUUAAUUUUGCUAAUGUAUCUCCGAGGCCAGAAGGUCAAUGAUUCUUA-----UGUCCUUUUCAUUCUGAGUGCCCU
ABXC01001605.1/104054-103967 UUGGGCACAAUGAGGAGUUAAUUUUGCUAAUGUAUCUCCGAGGCCAGAAGGUCAAUGAUUCUUA-----UGUCCUUUUCAUUCUGAGUGCCCU
AECO01021519.1/799-886       GGUGGCACAGUGAGGAACUAAUUUUGCUAAUGUAUCUAUGAGGUCAAAAGGCCAGUGAAUCAAA-----UGUCCUUUUCAUUCUGAGUGCCAA
ACYM01075370.1/27425-27333   AGAGGCACAAUGAGGAGAAAUUAUAGUAGUGGUAUUUAUGAGAUUCAUAAAUCAAUGACUAAAAAUUUUAGUCCUUUUCAUUCUGAGUGCCUU
AJ490377.1/1-87              U--GGCACAAUGAGGAACUAACUUUGCUAAUGUAUCUAUGAGGCCAUUAGGCUAAUGACUCAAA----AUGUCCUUUUCAUUCUGAGUGCCAC
AP004260.2/16932-16845       UUUGGCACAAUGAGGAGGUAAUUUAGCUAAUGUAUCUCUGAGGUCUGAAGGCCAAUGACUCCUA-----UGUCCUUUUCAUUCUGAGUGCCUU
AJ490375.1/1-88              UUUGGCACAAUGAGGAGGUAAUUUAGCUAAUGUAUCUCUGAGGUCUGAAGGCCAAUGACUCCUA-----UGUCCUUUUCAUUCUGAGUGCCUU
AP004306.3/60382-60295       UUUGGCACAAUGAGGAGGUAAUUUAGCUAAUGUAUCUCUGAGGUCUGAAGGCCAAUGACUCCUA-----UGUCCUUUUCAUUCUGAGUGCCUU
AC084762.8/87156-87068       GGUGGCACAAUGAGGAACUAACUUUGCUAAUGUAUCUAUGAGGCCAUUAGGCUAAUGACUCAAA----AUGUCCUUUUCAUUCUGAGUGCCAC
#=GC SS_cons                 :::<<<<<-<<<<<----------------------------<<<____>>>------------.....------->>>>>----->>>>>::
#=GC RF                      uuuGGCACAaUGAgGAguUAAUUUuGCUAAUGUAUCUaUGAGgcCagaAGgccAAUGAcUcaaA.....UGUCCUUuUCAuUCUGAGUGCCuu
//
