INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD44 ACC RF00287 DESC Small nucleolar RNA SNORD44 STATES 187 NODES 61 CLEN 61 W 78 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 05:04:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00287/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 12 EFFN 2.850586 CKSUM 3859760013 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.00 NC 39.30 EFP7GF -9.7944 0.71893 ECMLC 0.62994 -8.37455 1.53790 1600000 618057 0.001942 ECMGC 0.35629 -19.36234 -3.23542 1600000 125165 0.003196 ECMLI 0.59432 -6.75719 2.91595 1600000 376642 0.003186 ECMGI 0.39548 -13.53423 0.18198 1600000 90760 0.004407 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 78 98 -7.283 -7.490 -0.042 -5.904 IL 1 1 2 1 4 1 23 82 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 23 81 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 23 78 98 -8.278 -0.017 -6.932 -2.510 1.780 -3.338 -1.774 D 4 2 3 5 3 0 17 77 97 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 22 80 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 22 77 97 -8.278 -0.017 -6.932 -2.510 1.780 -3.338 -1.774 D 7 5 3 8 3 0 17 76 96 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 21 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 5 1 21 76 96 -7.371 -0.032 -7.186 -7.398 -8.290 -2.082 -1.977 -2.840 1.753 D 10 8 3 11 5 0 16 75 95 -4.959 -0.803 -4.221 -2.596 -2.508 IL 11 11 3 11 5 1 20 77 97 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 65 g u - - MP 12 11 3 16 6 2 21 75 95 -9.245 -9.184 -0.019 -7.961 -8.240 -8.635 -3.799 -2.564 -3.940 1.440 -4.889 -5.200 -0.426 -4.103 -3.701 2.052 -4.199 2.768 -0.663 -4.384 -2.361 -2.693 ML 13 11 3 16 6 1 17 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 3 16 6 1 16 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 13 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 18 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 18 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 64 g c - - MP 18 17 6 22 4 2 19 73 93 -7.283 -2.545 -0.312 -5.904 -3.040 -2.506 -3.133 0.916 -2.913 -3.841 1.708 -3.252 -3.154 1.881 -3.596 1.428 1.356 -3.204 -0.611 -2.096 ML 19 17 6 22 4 1 16 72 93 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 4 1 14 72 92 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 21 17 6 22 4 0 13 71 91 -4.568 -4.250 -2.265 -0.520 IL 22 22 5 22 4 1 18 74 94 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 23 23 6 23 3 1 17 72 92 -1.979 -0.500 -4.679 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 24 23 6 26 3 1 17 71 91 -8.278 -0.017 -6.932 1.207 -1.739 -0.063 -1.204 D 25 23 6 26 3 0 12 69 89 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 16 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 27 26 3 29 3 1 16 70 90 -8.278 -0.017 -6.932 -2.082 -1.977 -2.840 1.753 D 28 26 3 29 3 0 11 68 88 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 16 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 30 29 3 32 3 1 16 69 89 -8.278 -0.017 -6.932 -2.233 -3.543 1.836 -2.928 D 31 29 3 32 3 0 11 67 87 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 15 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 33 32 3 35 3 1 15 68 87 -8.278 -0.017 -6.932 1.826 -3.007 -2.577 -2.615 D 34 32 3 35 3 0 10 66 86 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 14 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 36 35 3 38 3 1 14 67 86 -8.278 -0.017 -6.932 -2.082 -1.977 -2.840 1.753 D 37 35 3 38 3 0 9 65 85 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 13 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 39 38 3 41 3 1 13 65 85 -8.278 -0.017 -6.932 -2.233 -3.543 1.836 -2.928 D 40 38 3 41 3 0 9 64 84 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 13 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 42 41 3 44 3 1 12 64 84 -8.278 -0.017 -6.932 1.826 -3.007 -2.577 -2.615 D 43 41 3 44 3 0 8 63 83 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 12 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 45 44 3 47 3 1 11 63 83 -8.278 -0.017 -6.932 -1.188 -0.386 -1.946 1.343 D 46 44 3 47 3 0 7 62 82 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 11 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 48 47 3 50 3 1 10 62 82 -8.278 -0.141 -3.476 1.826 -3.007 -2.577 -2.615 D 49 47 3 50 3 0 7 61 81 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 11 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 51 50 3 53 3 1 11 61 81 -4.153 -0.097 -6.809 1.790 -2.759 -2.352 -2.340 D 52 50 3 53 3 0 6 60 80 -7.129 -0.634 -1.521 IL 53 53 3 53 3 1 10 62 82 -1.630 -0.673 -4.331 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - G - - - ML 54 53 3 56 3 1 10 60 80 -8.278 -0.017 -6.932 -0.884 -2.580 1.605 -2.012 D 55 53 3 56 3 0 4 59 78 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 9 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - C - - - ML 57 56 3 59 3 1 10 59 79 -8.278 -0.017 -6.932 -0.904 1.440 -2.207 -0.902 D 58 56 3 59 3 0 3 58 77 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 8 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - A - - - ML 60 59 3 62 3 1 9 58 78 -8.278 -0.017 -6.932 1.826 -3.007 -2.577 -2.615 D 61 59 3 62 3 0 3 57 76 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 7 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - A - - - ML 63 62 3 65 3 1 8 57 77 -8.278 -0.017 -6.932 1.563 -2.095 -1.024 -1.643 D 64 62 3 65 3 0 2 55 75 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 7 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - A - - - ML 66 65 3 68 3 1 8 56 76 -8.278 -0.017 -6.932 1.610 -2.190 -1.214 -1.753 D 67 65 3 68 3 0 1 54 74 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 6 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - U - - - ML 69 68 3 71 3 1 7 55 74 -8.278 -0.017 -6.932 -1.087 -1.274 -1.295 1.437 D 70 68 3 71 3 0 1 53 73 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 5 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - a - - - ML 72 71 3 74 3 1 6 54 73 -3.957 -0.109 -6.932 0.742 -1.701 0.644 -1.127 D 73 71 3 74 3 0 0 52 71 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 5 55 74 -1.676 -0.646 -4.376 0.000 0.000 0.000 0.000 [ MATL 23 ] 25 - C - - - ML 75 74 3 77 3 1 6 52 72 -8.278 -0.017 -6.932 -0.498 1.093 -1.138 -0.504 D 76 74 3 77 3 0 0 51 71 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 4 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 26 - U - - - ML 78 77 3 80 3 1 5 51 71 -8.278 -0.017 -6.932 -0.570 -1.098 -1.113 1.261 D 79 77 3 80 3 0 0 50 70 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 3 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - G - - - ML 81 80 3 83 3 1 4 50 70 -8.278 -0.017 -6.932 -2.233 -3.543 1.836 -2.928 D 82 80 3 83 3 0 0 49 69 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 3 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 28 - A - - - ML 84 83 3 86 3 1 3 49 69 -8.278 -0.017 -6.932 1.316 -0.664 -1.479 -0.945 D 85 83 3 86 3 0 0 48 68 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 2 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - C - - - ML 87 86 3 89 3 1 2 48 68 -8.278 -0.017 -6.932 -1.677 1.511 -2.534 -0.591 D 88 86 3 89 3 0 0 47 66 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 2 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - U - - - ML 90 89 3 92 3 1 1 47 67 -8.278 -0.105 -3.894 -2.082 -1.977 -2.840 1.753 D 91 89 3 92 3 0 0 46 65 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 31 - G - - - ML 93 92 3 95 3 1 2 46 66 -8.190 -0.018 -6.844 -0.347 -1.150 1.168 -0.956 D 94 92 3 95 3 0 0 45 64 -6.922 -0.763 -1.313 IL 95 95 3 95 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 32 - A - - - ML 96 95 3 98 3 1 2 45 64 -8.278 -0.017 -6.932 1.826 -3.007 -2.577 -2.615 D 97 95 3 98 3 0 0 44 63 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 33 - A - - - ML 99 98 3 101 3 1 2 44 63 -8.278 -0.017 -6.932 1.826 -3.007 -2.577 -2.615 D 100 98 3 101 3 0 0 43 62 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - u - - - ML 102 101 3 104 3 1 1 43 62 -4.322 -0.086 -6.932 -0.049 0.157 -0.831 0.439 D 103 101 3 104 3 0 0 41 61 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 44 63 -1.624 -0.676 -4.325 0.000 0.000 0.000 0.000 [ MATL 33 ] 36 - g - - - ML 105 104 3 107 3 1 1 42 61 -8.278 -0.017 -6.932 0.624 -1.729 0.772 -1.153 D 106 104 3 107 3 0 0 40 60 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 37 - U - - - ML 108 107 3 110 3 1 1 41 60 -8.278 -0.017 -6.932 -2.082 -1.977 -2.840 1.753 D 109 107 3 110 3 0 0 39 59 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 38 - G - - - ML 111 110 3 113 3 1 1 39 59 -8.278 -0.017 -6.932 -2.233 -3.543 1.836 -2.928 D 112 110 3 113 3 0 0 38 58 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - A - - - ML 114 113 3 116 3 1 1 38 58 -8.278 -0.017 -6.932 1.826 -3.007 -2.577 -2.615 D 115 113 3 116 3 0 0 37 57 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 40 - A - - - ML 117 116 3 119 3 1 1 37 57 -8.278 -0.089 -4.143 1.826 -3.007 -2.577 -2.615 D 118 116 3 119 3 0 0 36 55 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - G - - - ML 120 119 3 122 3 1 1 36 55 -8.206 -0.017 -6.861 -2.089 -3.381 1.816 -2.768 D 121 119 3 122 3 0 0 35 54 -6.812 -0.844 -1.204 IL 122 122 3 122 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - G - - - ML 123 122 3 125 3 1 1 35 54 -8.278 -0.017 -6.932 -0.466 -1.681 1.248 -0.765 D 124 122 3 125 3 0 0 34 53 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - U - - - ML 126 125 3 128 3 1 1 34 53 -8.278 -0.017 -6.932 -2.082 -1.977 -2.840 1.753 D 127 125 3 128 3 0 0 33 52 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - C - - - ML 129 128 3 131 3 1 1 33 52 -8.278 -0.017 -6.932 -1.677 1.511 -2.534 -0.591 D 130 128 3 131 3 0 0 32 51 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 45 - U - - - ML 132 131 3 134 3 1 1 32 51 -8.278 -0.017 -6.932 -0.288 -1.144 -1.593 1.261 D 133 131 3 134 3 0 0 31 50 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 46 - U - - - ML 135 134 3 137 3 1 1 31 50 -8.278 -0.017 -6.932 -1.463 -0.998 -2.208 1.546 D 136 134 3 137 3 0 0 30 49 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - A - - - ML 138 137 3 140 3 1 1 30 49 -8.278 -0.097 -4.010 1.826 -3.007 -2.577 -2.615 D 139 137 3 140 3 0 0 29 48 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - A - - - ML 141 140 3 143 3 1 1 29 48 -8.198 -0.018 -6.852 1.156 -0.774 -1.267 -0.375 D 142 140 3 143 3 0 0 28 47 -6.869 -0.800 -1.261 IL 143 143 3 143 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - U - - - ML 144 143 3 146 3 1 1 28 47 -8.278 -0.017 -6.932 -2.082 -1.977 -2.840 1.753 D 145 143 3 146 3 0 0 27 46 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 50 - U - - - ML 147 146 3 149 3 1 1 27 45 -8.278 -0.017 -6.932 -1.390 -0.849 -2.136 1.504 D 148 146 3 149 3 0 0 26 45 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - A - - - ML 150 149 3 152 3 1 1 25 44 -8.278 -0.017 -6.932 1.370 -1.845 -0.431 -1.342 D 151 149 3 152 3 0 0 24 43 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 52 - G - - - ML 153 152 3 155 3 1 1 24 43 -8.278 -0.017 -6.932 -2.233 -3.543 1.836 -2.928 D 154 152 3 155 3 0 0 23 42 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - C - - - ML 156 155 3 158 3 1 1 23 42 -8.278 -0.017 -6.932 -2.510 1.780 -3.338 -1.774 D 157 155 3 158 3 0 0 22 41 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - U - - - ML 159 158 3 161 3 1 1 22 41 -8.278 -0.017 -6.932 -2.082 -1.977 -2.840 1.753 D 160 158 3 161 3 0 0 21 40 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - C - - - ML 162 161 3 164 3 1 1 21 40 -8.278 -0.017 -6.932 -1.330 1.284 -2.187 -0.079 D 163 161 3 164 3 0 0 20 39 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - U - - - ML 165 164 3 167 3 1 1 20 38 -8.278 -0.017 -6.932 -2.082 -1.977 -2.840 1.753 D 166 164 3 167 3 0 0 19 38 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - A - - - ML 168 167 3 170 3 1 1 19 37 -8.278 -0.017 -6.932 1.826 -3.007 -2.577 -2.615 D 169 167 3 170 3 0 0 18 37 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - a - - - ML 171 170 3 173 3 1 1 17 36 -8.278 -0.017 -6.932 0.718 -0.517 -0.398 -0.156 D 172 170 3 173 3 0 0 17 35 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - C - - - ML 174 173 3 176 3 1 1 16 34 -8.278 -0.017 -6.932 -2.510 1.780 -3.338 -1.774 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - U - - - ML 177 176 3 179 3 1 1 15 33 -8.278 -0.017 -6.932 -2.082 -1.977 -2.840 1.753 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - G - - - ML 180 179 3 182 3 1 1 13 31 -8.278 -0.095 -4.051 -2.233 -3.543 1.836 -2.928 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 62 - A - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 1.804 -2.851 -2.436 -2.443 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD44 ACC RF00287 DESC Small nucleolar RNA SNORD44 LENG 61 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 05:04:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00287/CM NSEQ 12 EFFN 2.979492 CKSUM 3859760013 STATS LOCAL MSV -7.7655 0.71893 STATS LOCAL VITERBI -8.7475 0.71893 STATS LOCAL FORWARD -3.6801 0.71893 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.15815 1.69506 1.51371 1.26495 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 0.00000 * 1 3.19121 0.14346 3.76335 2.66910 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 2 3.19121 0.14346 3.76335 2.66910 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 3 2.88110 2.79976 3.40802 0.16252 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 4 1.66960 2.94932 0.36199 2.76437 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 5 1.94155 1.49948 0.88928 1.50363 5 g - - < 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 6 0.54109 2.62101 1.42698 2.25261 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 7 2.88110 2.79976 3.40802 0.16252 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 8 2.98774 3.90175 0.10713 3.47436 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 9 0.11406 3.52476 3.22178 3.25840 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 10 2.88110 2.79976 3.40802 0.16252 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 11 2.98774 3.90175 0.10713 3.47436 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 12 0.11406 3.52476 3.22178 3.25840 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 13 2.24015 1.65816 2.76682 0.44596 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 14 0.11406 3.52476 3.22178 3.25840 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.12692 4.11366 2.27453 1.46634 0.26236 1.09861 0.40547 15 0.13747 3.35013 3.06345 3.06549 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.09639 2.60379 4.02319 0.42887 1.05338 0.27605 1.42202 16 2.01917 3.21409 0.26444 2.82339 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 17 2.03669 0.37402 2.95856 2.04266 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 18 0.11406 3.52476 3.22178 3.25840 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 19 0.29477 2.87198 2.10617 2.56389 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 20 0.26203 2.93926 2.24096 2.64151 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 21 2.17086 2.29618 2.30016 0.37829 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 22 0.86681 2.59390 0.93170 2.19737 23 a - - _ 1.38629 1.38629 1.38629 1.38629 0.10255 2.51184 4.11366 0.36353 1.18815 1.09861 0.40547 23 1.74727 0.61505 2.18830 1.75429 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 24 1.79628 2.16821 2.16988 0.50168 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 25 2.98774 3.90175 0.10713 3.47436 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 26 0.46393 1.84935 2.43715 2.06794 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 27 2.59154 0.32706 3.18745 1.81536 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 28 2.88110 2.79976 3.40802 0.16252 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.10010 4.11366 2.53951 1.46634 0.26236 1.09861 0.40547 29 1.64108 2.19456 0.56370 2.07370 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03550 4.04906 4.04906 1.46634 0.26236 0.34668 1.22769 30 0.11406 3.52476 3.22178 3.25840 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 31 0.11406 3.52476 3.22178 3.25840 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 32 1.42337 1.27216 1.96699 1.08176 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.08580 2.71997 4.11366 0.43891 1.03491 1.09861 0.40547 33 0.94969 2.61328 0.84224 2.21550 36 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 34 2.88110 2.79976 3.40802 0.16252 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 35 2.98774 3.90175 0.10713 3.47436 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 36 0.11406 3.52476 3.22178 3.25840 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 37 0.11406 3.52476 3.22178 3.25840 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.08767 4.11366 2.69425 1.46634 0.26236 1.09861 0.40547 38 2.88721 3.78933 0.11986 3.36360 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03507 4.06105 4.06105 1.46634 0.26236 0.39455 1.12081 39 1.72324 2.57474 0.51016 1.93143 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 40 2.88110 2.79976 3.40802 0.16252 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 41 2.59154 0.32706 3.18745 1.81536 44 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 42 1.59460 2.20146 2.51542 0.50164 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 43 2.43613 2.09437 2.95313 0.30493 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 44 0.11406 3.52476 3.22178 3.25840 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.09403 4.11366 2.61194 1.46634 0.26236 1.09861 0.40547 45 0.57601 1.92929 2.28382 1.65695 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03529 4.05492 4.05492 1.46634 0.26236 0.36845 1.17702 46 2.88110 2.79976 3.40802 0.16252 49 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 47 2.38405 1.98787 2.90241 0.33415 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 48 0.42781 2.69592 1.68584 2.35078 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 49 2.98774 3.90175 0.10713 3.47436 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 50 3.19121 0.14346 3.76335 2.66910 53 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 51 2.88110 2.79976 3.40802 0.16252 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 52 2.34179 0.48405 2.93922 1.44964 55 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 53 2.88110 2.79976 3.40802 0.16252 56 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 54 0.11406 3.52476 3.22178 3.25840 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 55 0.88442 1.74593 1.66370 1.50001 58 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 56 3.19121 0.14346 3.76335 2.66910 59 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 57 2.88110 2.79976 3.40802 0.16252 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 58 2.98774 3.90175 0.10713 3.47436 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.09202 4.11366 2.63711 1.46634 0.26236 1.09861 0.40547 59 0.12818 3.41531 3.12245 3.13750 62 A - - _ 1.38629 1.38629 1.38629 1.38629 0.23533 1.64825 4.05685 0.17109 1.84990 0.37628 1.15968 60 1.69176 1.38617 1.35927 1.17466 64 u - - > 1.38629 1.38629 1.38629 1.38629 0.03324 4.11366 4.11366 1.46634 0.26236 1.09861 0.40547 61 2.97328 1.31060 2.74360 0.48635 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.01676 4.09717 * 1.46634 0.26236 0.00000 * //