INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD48 ACC RF00282 DESC Small nucleolar RNA SNORD48 STATES 193 NODES 63 CLEN 63 W 80 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 14:25:01 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00282/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 2.144531 CKSUM 4155314409 NULL 0.000 0.000 0.000 0.000 GA 36.00 TC 36.10 NC 35.10 EFP7GF -8.6039 0.71888 ECMLC 0.72577 -6.49926 1.62517 1600000 436506 0.002749 ECMGC 0.41593 -19.82385 -6.15064 1600000 118019 0.003389 ECMLI 0.69364 -5.03524 3.08697 1600000 335708 0.003575 ECMGI 0.46759 -14.22044 -2.61199 1600000 91072 0.004392 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 80 100 -9.141 -9.080 -0.021 -7.857 -8.136 -8.531 IL 1 1 2 1 6 1 22 82 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 22 81 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 64 g c - - MP 3 2 3 7 6 2 22 80 100 -9.141 -9.080 -0.021 -7.857 -8.136 -8.531 -3.130 0.047 -3.162 1.097 -3.439 -3.858 0.741 -3.539 -3.296 2.824 -3.721 -0.185 0.815 -3.171 -1.129 -2.194 ML 4 2 3 7 6 1 19 79 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 18 79 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 16 77 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 20 80 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 20 79 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 63 g c - - MP 9 8 6 13 4 2 20 78 98 -7.033 -7.240 -0.164 -3.419 -3.454 -2.480 -3.438 1.072 -3.786 -4.121 0.657 -3.801 -3.573 2.926 -3.972 0.700 0.766 -3.431 -1.311 -2.398 ML 10 8 6 13 4 1 18 78 99 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 4 1 16 78 98 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 12 8 6 13 4 0 15 77 97 -4.568 -4.250 -2.265 -0.520 IL 13 13 5 13 4 1 20 79 100 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 14 14 6 14 3 1 19 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 15 14 6 17 3 1 19 76 96 -7.941 -0.021 -6.595 -1.443 -1.447 -2.175 1.606 D 16 14 6 17 3 0 15 74 95 -6.915 -0.768 -1.306 IL 17 17 3 17 3 1 18 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 18 17 3 20 3 1 18 75 95 -8.044 -0.019 -6.698 0.943 -1.457 0.228 -0.884 D 19 17 3 20 3 0 13 73 93 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 17 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 21 20 3 23 3 1 17 74 94 -8.044 -0.019 -6.698 1.377 -1.448 -1.415 -0.597 D 22 20 3 23 3 0 12 72 92 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 17 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 24 23 3 26 3 1 16 73 93 -8.044 -0.019 -6.698 -1.635 -1.605 -2.375 1.658 D 25 23 3 26 3 0 11 71 91 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 16 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 27 26 3 29 3 1 16 72 92 -8.044 -0.019 -6.698 -1.750 -2.996 1.759 -2.384 D 28 26 3 29 3 0 11 70 90 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 15 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 30 29 3 32 3 1 15 71 91 -8.044 -0.019 -6.698 1.751 -2.533 -2.149 -2.091 D 31 29 3 32 3 0 10 69 89 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 14 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 33 32 3 35 3 1 14 70 90 -8.044 -0.019 -6.698 -1.635 -1.605 -2.375 1.658 D 34 32 3 35 3 0 9 68 88 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 13 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 36 35 3 38 3 1 13 68 89 -8.044 -0.019 -6.698 -1.750 -2.996 1.759 -2.384 D 37 35 3 38 3 0 8 67 87 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 13 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 39 38 3 41 3 1 12 67 87 -8.044 -0.019 -6.698 1.751 -2.533 -2.149 -2.091 D 40 38 3 41 3 0 8 66 86 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 12 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 42 41 3 44 3 1 11 66 86 -8.044 -0.019 -6.698 -1.196 1.306 -2.026 -0.243 D 43 41 3 44 3 0 7 65 85 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 11 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 45 44 3 47 3 1 10 65 85 -8.044 -0.111 -3.833 -1.196 1.306 -2.026 -0.243 D 46 44 3 47 3 0 6 64 84 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 11 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - c - - - ML 48 47 3 50 3 1 11 64 84 -7.954 -0.021 -6.608 -0.800 0.890 -1.602 0.313 D 49 47 3 50 3 0 5 63 83 -6.845 -0.819 -1.236 IL 50 50 3 50 3 1 9 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - C - - - ML 51 50 3 53 3 1 10 63 83 -8.044 -0.019 -6.698 -1.222 1.327 -2.052 -0.283 D 52 50 3 53 3 0 4 62 82 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 9 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 54 53 3 56 3 1 9 62 82 -8.044 -0.019 -6.698 1.360 -1.422 -1.397 -0.557 D 55 53 3 56 3 0 3 61 81 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 8 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - G - - - ML 57 56 3 59 3 1 9 61 81 -8.044 -0.019 -6.698 -1.750 -2.996 1.759 -2.384 D 58 56 3 59 3 0 2 60 80 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 7 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 60 59 3 62 3 1 8 60 80 -8.044 -0.019 -6.698 -1.750 -2.996 1.759 -2.384 D 61 59 3 62 3 0 2 59 79 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 7 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 63 62 3 65 3 1 7 59 79 -8.044 -0.019 -6.698 -1.635 -1.605 -2.375 1.658 D 64 62 3 65 3 0 1 58 78 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 66 65 3 68 3 1 7 58 78 -8.044 -0.019 -6.698 -0.418 -2.032 1.400 -1.445 D 67 65 3 68 3 0 0 57 77 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 5 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 69 68 3 71 3 1 6 57 77 -8.044 -0.019 -6.698 1.751 -2.533 -2.149 -2.091 D 70 68 3 71 3 0 0 56 76 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 4 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - u - - - ML 72 71 3 74 3 1 5 56 76 -8.044 -0.019 -6.698 -0.785 0.221 -1.556 0.937 D 73 71 3 74 3 0 0 55 74 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 4 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 75 74 3 77 3 1 5 55 75 -8.044 -0.019 -6.698 -1.635 -1.605 -2.375 1.658 D 76 74 3 77 3 0 0 54 73 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 3 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 78 77 3 80 3 1 4 54 74 -8.044 -0.019 -6.698 -1.936 1.673 -2.765 -1.310 D 79 77 3 80 3 0 0 52 72 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 3 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 81 80 3 83 3 1 4 53 73 -8.044 -0.019 -6.698 -1.635 -1.605 -2.375 1.658 D 82 80 3 83 3 0 0 51 71 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 2 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - G - - - ML 84 83 3 86 3 1 3 52 71 -8.044 -0.019 -6.698 -1.750 -2.996 1.759 -2.384 D 85 83 3 86 3 0 0 50 70 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 87 86 3 89 3 1 3 51 70 -8.044 -0.019 -6.698 1.751 -2.533 -2.149 -2.091 D 88 86 3 89 3 0 0 49 69 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 90 89 3 92 3 1 2 50 69 -8.044 -0.019 -6.698 -1.750 -2.996 1.759 -2.384 D 91 89 3 92 3 0 0 48 68 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - U - - - ML 93 92 3 95 3 1 2 49 68 -8.044 -0.019 -6.698 -1.635 -1.605 -2.375 1.658 D 94 92 3 95 3 0 0 47 67 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - G - - - ML 96 95 3 98 3 1 2 48 67 -8.044 -0.019 -6.698 -1.750 -2.996 1.759 -2.384 D 97 95 3 98 3 0 0 46 66 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - U - - - ML 99 98 3 101 3 1 1 47 66 -8.044 -0.019 -6.698 -1.043 -0.606 -1.784 1.360 D 100 98 3 101 3 0 0 45 65 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - C - - - ML 102 101 3 104 3 1 1 45 65 -3.804 -0.122 -6.698 -0.851 1.180 -1.023 -0.540 D 103 101 3 104 3 0 0 44 63 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 46 66 -1.664 -0.653 -4.364 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - U - - - ML 105 104 3 107 3 1 1 44 63 -8.044 -0.019 -6.698 -1.635 -1.605 -2.375 1.658 D 106 104 3 107 3 0 0 43 62 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - C - - - ML 108 107 3 110 3 1 1 43 62 -8.044 -0.019 -6.698 -1.936 1.673 -2.765 -1.310 D 109 107 3 110 3 0 0 42 61 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - G - - - ML 111 110 3 113 3 1 1 42 61 -8.044 -0.019 -6.698 -1.750 -2.996 1.759 -2.384 D 112 110 3 113 3 0 0 41 60 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - C - - - ML 114 113 3 116 3 1 1 41 60 -8.044 -0.019 -6.698 -1.936 1.673 -2.765 -1.310 D 115 113 3 116 3 0 0 40 59 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - U - - - ML 117 116 3 119 3 1 1 40 59 -8.044 -0.019 -6.698 -1.635 -1.605 -2.375 1.658 D 118 116 3 119 3 0 0 38 58 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - G - - - ML 120 119 3 122 3 1 1 39 58 -8.044 -0.019 -6.698 -1.750 -2.996 1.759 -2.384 D 121 119 3 122 3 0 0 37 57 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - - - ML 123 122 3 125 3 1 1 38 57 -8.044 -0.019 -6.698 1.751 -2.533 -2.149 -2.091 D 124 122 3 125 3 0 0 36 56 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - C - - - ML 126 125 3 128 3 1 1 37 56 -8.044 -0.019 -6.698 -1.176 1.290 -2.006 -0.213 D 127 125 3 128 3 0 0 35 55 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - G - - - ML 129 128 3 131 3 1 1 35 55 -8.044 -0.019 -6.698 -1.750 -2.996 1.759 -2.384 D 130 128 3 131 3 0 0 34 54 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - C - - - ML 132 131 3 134 3 1 1 34 54 -8.044 -0.019 -6.698 -1.936 1.673 -2.765 -1.310 D 133 131 3 134 3 0 0 33 52 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - C - - - ML 135 134 3 137 3 1 1 33 52 -8.044 -0.019 -6.698 -1.936 1.673 -2.765 -1.310 D 136 134 3 137 3 0 0 32 51 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - A - - - ML 138 137 3 140 3 1 1 32 51 -8.044 -0.019 -6.698 1.751 -2.533 -2.149 -2.091 D 139 137 3 140 3 0 0 31 50 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - U - - - ML 141 140 3 143 3 1 1 31 50 -8.044 -0.019 -6.698 -0.736 -1.010 -0.924 1.249 D 142 140 3 143 3 0 0 30 49 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - C - - - ML 144 143 3 146 3 1 1 30 49 -8.044 -0.019 -6.698 -1.936 1.673 -2.765 -1.310 D 145 143 3 146 3 0 0 29 48 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - A - - - ML 147 146 3 149 3 1 1 29 48 -8.044 -0.019 -6.698 1.751 -2.533 -2.149 -2.091 D 148 146 3 149 3 0 0 28 47 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - C - - - ML 150 149 3 152 3 1 1 28 47 -8.044 -0.019 -6.698 -1.936 1.673 -2.765 -1.310 D 151 149 3 152 3 0 0 27 46 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - C - - - ML 153 152 3 155 3 1 1 27 46 -8.044 -0.019 -6.698 -1.936 1.673 -2.765 -1.310 D 154 152 3 155 3 0 0 26 45 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - G - - - ML 156 155 3 158 3 1 1 26 45 -8.044 -0.019 -6.698 -1.750 -2.996 1.759 -2.384 D 157 155 3 158 3 0 0 25 44 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 52 - C - - - ML 159 158 3 161 3 1 1 25 43 -8.044 -0.019 -6.698 -1.936 1.673 -2.765 -1.310 D 160 158 3 161 3 0 0 23 42 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 53 - A - - - ML 162 161 3 164 3 1 1 23 42 -8.044 -0.019 -6.698 1.751 -2.533 -2.149 -2.091 D 163 161 3 164 3 0 0 22 41 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - G - - - ML 165 164 3 167 3 1 1 22 41 -8.044 -0.019 -6.698 -1.750 -2.996 1.759 -2.384 D 166 164 3 167 3 0 0 21 40 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 55 - C - - - ML 168 167 3 170 3 1 1 21 40 -8.044 -0.019 -6.698 -1.936 1.673 -2.765 -1.310 D 169 167 3 170 3 0 0 20 39 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - G - - - ML 171 170 3 173 3 1 1 20 39 -8.044 -0.019 -6.698 -1.750 -2.996 1.759 -2.384 D 172 170 3 173 3 0 0 19 38 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - C - - - ML 174 173 3 176 3 1 1 19 37 -8.044 -0.019 -6.698 -1.936 1.673 -2.765 -1.310 D 175 173 3 176 3 0 0 18 37 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - G - - - ML 177 176 3 179 3 1 1 17 36 -8.044 -0.019 -6.698 -0.862 -1.733 1.345 -0.715 D 178 176 3 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - C - - - ML 180 179 3 182 3 1 1 16 35 -8.044 -0.019 -6.698 -1.936 1.673 -2.765 -1.310 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 60 - U - - - ML 183 182 3 185 3 1 1 15 33 -8.044 -0.019 -6.698 -1.635 -1.605 -2.375 1.658 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 61 - G - - - ML 186 185 3 188 3 1 1 13 31 -8.044 -0.125 -3.654 -1.750 -2.996 1.759 -2.384 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 62 - A - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 1.708 -2.322 -1.959 -1.859 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD48 ACC RF00282 DESC Small nucleolar RNA SNORD48 LENG 63 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 14:25:01 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00282/CM NSEQ 8 EFFN 2.238281 CKSUM 4155314409 STATS LOCAL MSV -8.5582 0.71888 STATS LOCAL VITERBI -8.7470 0.71888 STATS LOCAL FORWARD -4.0890 0.71888 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49905 1.31214 1.30053 1.44805 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 0.00000 * 1 1.54463 2.13718 0.67209 1.84526 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 2 1.86991 2.21178 0.53125 1.90726 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.11938 3.95349 2.37145 1.46634 0.26236 1.09861 0.40547 3 2.42673 2.42234 2.93581 0.26153 3 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04233 3.87644 3.87644 1.46634 0.26236 0.34438 1.23327 4 0.72569 2.41734 1.22291 2.02134 4 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 5 0.42260 2.40991 2.38921 1.81316 5 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 6 2.56293 2.53494 3.07838 0.22612 6 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 7 2.64837 3.51899 0.15746 3.09451 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 8 0.16365 3.18901 2.91803 2.88771 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 9 2.56293 2.53494 3.07838 0.22612 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 10 2.64837 3.51899 0.15746 3.09451 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 11 0.16365 3.18901 2.91803 2.88771 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 12 2.24724 0.46749 2.82562 1.56797 12 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 13 2.24724 0.46749 2.82562 1.56797 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.10954 3.95349 2.47024 1.46634 0.26236 1.09861 0.40547 14 1.96174 0.75703 2.52049 1.17147 14 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04193 3.88588 3.88588 1.46634 0.26236 0.37418 1.16429 15 2.26603 0.45330 2.84469 1.59653 15 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 16 0.43444 2.39114 2.37588 1.78430 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 17 2.64837 3.51899 0.15746 3.09451 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 18 2.64837 3.51899 0.15746 3.09451 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 19 2.56293 2.53494 3.07838 0.22612 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 20 1.68998 2.82636 0.40425 2.42169 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 21 0.16365 3.18901 2.91803 2.88771 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 22 1.95027 1.22765 2.48641 0.73069 22 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 23 2.56293 2.53494 3.07838 0.22612 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 24 2.78532 0.21410 3.36071 2.34017 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 25 2.56293 2.53493 3.07838 0.22612 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 26 2.64837 3.51899 0.15746 3.09451 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 27 0.16365 3.18901 2.91803 2.88771 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 28 2.64837 3.51899 0.15746 3.09451 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 29 2.56293 2.53494 3.07838 0.22612 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 30 2.64837 3.51899 0.15746 3.09451 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 31 2.13560 1.81550 2.65010 0.43321 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 32 2.00556 0.55145 2.10950 1.78377 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.11833 2.38156 3.95349 0.37356 1.16564 1.09861 0.40547 33 2.56293 2.53494 3.07838 0.22612 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 34 2.78532 0.21410 3.36071 2.34017 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 35 2.64837 3.51899 0.15746 3.09451 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 36 2.78532 0.21410 3.36071 2.34017 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 37 2.56293 2.53494 3.07838 0.22612 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 38 2.64837 3.51899 0.15746 3.09451 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 39 0.16365 3.18901 2.91803 2.88771 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 40 2.23329 0.47848 2.81143 1.54656 41 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 41 2.64837 3.51899 0.15746 3.09451 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 42 2.78532 0.21410 3.36071 2.34017 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 43 2.78532 0.21410 3.36071 2.34017 44 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 44 0.16365 3.18901 2.91803 2.88771 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 45 1.91785 2.10540 2.03732 0.50932 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 46 2.78532 0.21410 3.36071 2.34017 47 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 47 0.16365 3.18901 2.91803 2.88771 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 48 2.78532 0.21410 3.36071 2.34017 49 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 49 2.78532 0.21410 3.36071 2.34017 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 50 2.64837 3.51899 0.15746 3.09451 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 51 2.78532 0.21410 3.36071 2.34017 52 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 52 0.16365 3.18901 2.91803 2.88771 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 53 2.64837 3.51899 0.15746 3.09451 54 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 54 2.78532 0.21410 3.36071 2.34017 55 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 55 2.64837 3.51899 0.15746 3.09451 56 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 56 2.78532 0.21410 3.36071 2.34017 57 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 57 2.01015 2.61616 0.44129 1.89883 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 58 2.78532 0.21410 3.36071 2.34017 59 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 59 2.56293 2.53494 3.07838 0.22612 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 60 2.64837 3.51899 0.15746 3.09451 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.12078 3.95349 2.35831 1.46634 0.26236 1.09861 0.40547 61 0.19286 3.03918 2.78315 2.72289 62 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04239 3.87511 3.87511 1.46634 0.26236 0.34056 1.24261 62 2.10393 0.69879 2.02953 1.38853 63 c - - > 1.38629 1.38629 1.38629 1.38629 0.03913 3.95349 3.95349 1.46634 0.26236 1.09861 0.40547 63 2.04934 0.64905 1.94960 1.57839 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.01976 3.93412 * 1.46634 0.26236 0.00000 * //