INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD49 ACC RF00277 DESC Small nucleolar RNA SNORD49 STATES 217 NODES 73 CLEN 71 W 151 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 22:47:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00277/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 28 EFFN 4.269043 CKSUM 1905851644 NULL 0.000 0.000 0.000 0.000 GA 37.00 TC 37.00 NC 36.90 EFP7GF -10.5531 0.71871 ECMLC 0.70524 -9.09573 -0.58657 1600000 484613 0.002476 ECMGC 0.41047 -18.74758 -5.78881 1600000 81682 0.004897 ECMLI 0.61754 -8.23551 0.77694 1600000 313510 0.003828 ECMGI 0.43943 -12.22767 -0.83912 1600000 59630 0.006708 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 151 233 -7.683 -7.890 -0.032 -6.304 IL 1 1 2 1 4 1 30 153 235 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 29 152 235 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 2 29 151 233 -6.015 -0.045 -6.015 -1.117 -0.814 -0.496 1.177 D 4 2 3 5 3 0 25 148 230 -11.551 -1.585 -0.585 IL 5 5 3 5 3 2 30 158 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 28 150 232 -6.015 -0.125 -3.889 -1.405 -1.876 1.403 -0.504 D 7 5 3 8 3 0 24 147 229 -11.551 -1.585 -0.585 IL 8 8 3 8 3 2 30 156 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 1 27 149 231 -5.938 -0.048 -5.938 -0.732 0.817 -0.603 -0.032 D 10 8 3 11 3 0 23 146 228 -12.636 -2.671 -0.247 IL 11 11 3 11 3 2 29 155 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 27 147 229 -5.938 -0.048 -5.938 -0.146 -0.163 -0.476 0.570 D 13 11 3 14 3 0 23 145 227 -12.636 -0.544 -1.671 IL 14 14 3 14 3 1 28 154 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - c - - - ML 15 14 3 17 3 1 26 146 228 -6.015 -0.045 -6.015 0.107 0.749 -0.641 -0.732 D 16 14 3 17 3 0 21 143 225 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 27 153 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 25 145 227 -6.015 -0.045 -6.015 -2.576 -2.091 -2.766 1.787 D 19 17 3 20 3 0 20 142 223 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 27 151 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 24 143 225 -6.015 -0.045 -6.015 -2.409 -3.427 1.851 -3.154 D 22 20 3 23 3 0 20 140 222 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 26 150 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 23 142 224 -6.015 -0.045 -6.015 1.873 -3.338 -3.020 -3.131 D 25 23 3 26 3 0 19 139 220 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 25 149 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 22 141 222 -6.015 -0.045 -6.015 -2.576 -2.091 -2.766 1.787 D 28 26 3 29 3 0 18 138 219 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 24 148 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 22 140 221 -6.015 -0.045 -6.015 -2.409 -3.427 1.851 -3.154 D 31 29 3 32 3 0 18 137 218 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 23 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 21 138 220 -6.015 -0.045 -6.015 1.873 -3.338 -3.020 -3.131 D 34 32 3 35 3 0 17 135 216 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 22 145 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - a - - - ML 36 35 3 38 3 1 20 137 218 -6.015 -0.045 -6.015 0.475 -0.555 -0.493 0.286 D 37 35 3 38 3 0 16 134 215 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 22 144 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 39 38 3 41 3 1 19 136 217 -6.015 -0.101 -4.255 1.696 -2.528 -1.411 -2.241 D 40 38 3 41 3 0 16 133 214 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 21 143 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - c - - - ML 42 41 3 44 3 1 18 135 215 -5.961 -0.047 -5.961 -0.485 0.527 -1.171 0.486 D 43 41 3 44 3 0 15 132 212 -12.396 -2.430 -0.296 IL 44 44 3 44 3 1 20 141 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - c - - - ML 45 44 3 47 3 1 18 133 214 -5.961 -0.101 -4.279 -0.633 0.754 -0.657 0.049 D 46 44 3 47 3 0 15 131 212 -12.396 -0.670 -1.430 IL 47 47 3 47 3 1 20 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - a - - - ML 48 47 3 50 3 1 17 132 213 -5.965 -0.047 -5.965 0.603 -0.502 -0.027 -0.334 D 49 47 3 50 3 0 13 130 210 -12.347 -0.699 -1.381 IL 50 50 3 50 3 1 19 139 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - c - - - ML 51 50 3 53 3 1 16 131 211 -6.015 -0.045 -6.015 -0.698 0.426 0.203 -0.169 D 52 50 3 53 3 0 11 128 208 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 18 138 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - u - - - ML 54 53 3 56 3 1 16 129 210 -6.015 -0.045 -6.015 -0.117 -0.789 -0.442 0.818 D 55 53 3 56 3 0 11 126 206 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 17 136 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - a - - - ML 57 56 3 59 3 1 15 128 208 -6.015 -0.045 -6.015 0.860 -0.663 -0.211 -0.537 D 58 56 3 59 3 0 10 125 205 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 17 135 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 60 59 3 62 3 1 14 127 207 -2.071 -0.422 -6.015 1.690 -2.513 -1.384 -2.224 D 61 59 3 62 3 0 9 123 203 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 15 128 208 -0.942 -1.060 -14.880 0.000 0.000 0.000 0.000 [ MATL 21 ] 25 - U - - - ML 63 62 3 65 3 1 14 125 205 -6.015 -0.045 -6.015 -1.459 -1.725 -2.207 1.640 D 64 62 3 65 3 0 9 122 202 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 15 132 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 26 - A - - - ML 66 65 3 68 3 1 13 124 204 -6.015 -0.045 -6.015 1.873 -3.338 -3.020 -3.131 D 67 65 3 68 3 0 8 121 200 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 14 131 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 27 - G - - - ML 69 68 3 71 3 1 12 122 202 -6.015 -0.045 -6.015 -2.409 -3.427 1.851 -3.154 D 70 68 3 71 3 0 7 119 199 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 14 129 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 28 - G - - - ML 72 71 3 74 3 1 12 121 201 -6.015 -0.045 -6.015 -2.409 -3.427 1.851 -3.154 D 73 71 3 74 3 0 6 118 197 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 13 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 29 - A - - - ML 75 74 3 77 3 1 11 120 199 -6.015 -0.045 -6.015 1.873 -3.338 -3.020 -3.131 D 76 74 3 77 3 0 6 117 196 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 12 127 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 30 - A - - - ML 78 77 3 80 3 1 10 119 198 -6.015 -0.045 -6.015 1.873 -3.338 -3.020 -3.131 D 79 77 3 80 3 0 5 115 194 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 12 126 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 31 - G - - - ML 81 80 3 83 3 1 10 117 196 -6.015 -0.045 -6.015 -2.409 -3.427 1.851 -3.154 D 82 80 3 83 3 0 5 114 193 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 11 124 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 32 - U - - - ML 84 83 3 86 3 1 9 116 195 -6.015 -0.045 -6.015 -2.576 -2.091 -2.766 1.787 D 85 83 3 86 3 0 4 113 191 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 10 123 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 33 - G - - - ML 87 86 3 89 3 1 8 115 193 -6.015 -0.045 -6.015 -2.409 -3.427 1.851 -3.154 D 88 86 3 89 3 0 3 111 190 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 10 122 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 34 - C - - - ML 90 89 3 92 3 1 8 113 192 -6.015 -0.045 -6.015 -2.827 1.808 -3.070 -2.075 D 91 89 3 92 3 0 3 110 188 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 9 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 35 - C - - - ML 93 92 3 95 3 1 7 112 190 -6.015 -0.045 -6.015 -2.827 1.808 -3.070 -2.075 D 94 92 3 95 3 0 2 109 187 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 8 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 36 - G - - - ML 96 95 3 98 3 1 6 111 189 -6.015 -0.045 -6.015 -2.409 -3.427 1.851 -3.154 D 97 95 3 98 3 0 2 107 185 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 8 118 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 37 - U - - - ML 99 98 3 101 3 1 6 109 187 -6.015 -0.045 -6.015 -2.576 -2.091 -2.766 1.787 D 100 98 3 101 3 0 1 106 184 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 7 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 38 - C - - - ML 102 101 3 104 3 1 5 108 186 -6.015 -0.045 -6.015 -2.827 1.808 -3.070 -2.075 D 103 101 3 104 3 0 0 105 182 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 6 115 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 39 - A - - - ML 105 104 3 107 3 1 4 106 184 -6.015 -0.045 -6.015 1.239 -0.725 -1.361 -0.632 D 106 104 3 107 3 0 0 103 181 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 6 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - G - - - ML 108 107 3 110 3 1 4 105 183 -6.015 -0.045 -6.015 -2.409 -3.427 1.851 -3.154 D 109 107 3 110 3 0 0 102 179 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 5 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - A - - - ML 111 110 3 113 3 1 3 104 181 -6.015 -0.099 -4.302 1.873 -3.338 -3.020 -3.131 D 112 110 3 113 3 0 0 101 178 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 5 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - a - - - ML 114 113 3 116 3 1 3 102 180 -5.964 -0.047 -5.964 0.417 -0.751 -0.439 0.415 D 115 113 3 116 3 0 0 100 177 -12.366 -0.687 -1.400 IL 116 116 3 116 3 1 4 110 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - G - - - ML 117 116 3 119 3 1 2 101 178 -6.015 -0.045 -6.015 -0.855 -1.839 1.398 -0.911 D 118 116 3 119 3 0 0 98 175 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 4 109 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - C - - - ML 120 119 3 122 3 1 2 100 177 -6.015 -0.045 -6.015 -2.827 1.808 -3.070 -2.075 D 121 119 3 122 3 0 0 96 173 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 3 107 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - G - - - ML 123 122 3 125 3 1 2 98 175 -6.015 -0.045 -6.015 -2.409 -3.427 1.851 -3.154 D 124 122 3 125 3 0 0 95 171 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 3 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 46 - A - - - ML 126 125 3 128 3 1 1 97 173 -6.015 -0.045 -6.015 1.746 -2.696 -1.716 -2.425 D 127 125 3 128 3 0 0 93 170 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 2 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 47 - u - - - ML 129 128 3 131 3 1 1 95 172 -6.015 -0.045 -6.015 -0.938 -0.343 -0.280 0.900 D 130 128 3 131 3 0 0 92 168 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 2 103 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - A - - - ML 132 131 3 134 3 1 1 94 170 -6.015 -0.045 -6.015 1.873 -3.338 -3.020 -3.131 D 133 131 3 134 3 0 0 91 167 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 2 102 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - - - ML 135 134 3 137 3 1 1 93 169 -6.015 -0.045 -6.015 1.738 -2.665 -1.659 -2.391 D 136 134 3 137 3 0 0 89 165 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 2 100 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - C - - - ML 138 137 3 140 3 1 1 91 167 -6.015 -0.045 -6.015 -2.827 1.808 -3.070 -2.075 D 139 137 3 140 3 0 0 88 163 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 99 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - U - - - ML 141 140 3 143 3 1 1 90 165 -6.015 -0.045 -6.015 -2.576 -2.091 -2.766 1.787 D 142 140 3 143 3 0 0 86 162 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 98 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - G - - - ML 144 143 3 146 3 1 1 88 164 -6.015 -0.045 -6.015 -2.409 -3.427 1.851 -3.154 D 145 143 3 146 3 0 0 85 160 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - A - - - ML 147 146 3 149 3 1 1 87 162 -6.015 -0.045 -6.015 1.873 -3.338 -3.020 -3.131 D 148 146 3 149 3 0 0 83 158 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 95 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 54 - C - - - ML 150 149 3 152 3 1 1 85 160 -6.015 -0.045 -6.015 -2.827 1.808 -3.070 -2.075 D 151 149 3 152 3 0 0 82 156 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 55 - G - - - ML 153 152 3 155 3 1 1 84 159 -6.015 -0.045 -6.015 -2.409 -3.427 1.851 -3.154 D 154 152 3 155 3 0 0 80 155 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 92 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 56 - A - - - ML 156 155 3 158 3 1 1 82 157 -6.015 -0.045 -6.015 1.873 -3.338 -3.020 -3.131 D 157 155 3 158 3 0 0 79 153 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 91 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 57 - u - - - ML 159 158 3 161 3 1 1 81 155 -6.015 -0.045 -6.015 -0.764 -0.259 -0.618 0.944 D 160 158 3 161 3 0 0 77 151 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 89 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 58 - a - - - ML 162 161 3 164 3 1 1 79 153 -4.586 -0.162 -3.949 0.648 -0.806 0.223 -0.528 D 163 161 3 164 3 0 0 76 150 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 79 153 -3.288 -0.157 -10.932 0.000 0.000 0.000 0.000 [ MATL 55 ] 60 - a - - - ML 165 164 3 167 3 1 1 78 152 -5.943 -0.082 -4.687 0.401 -0.354 -0.721 0.368 D 166 164 3 167 3 0 0 74 148 -12.596 -2.630 -0.254 IL 167 167 3 167 3 1 1 87 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - c - - - ML 168 167 3 170 3 1 1 77 151 -5.910 -0.049 -5.910 -0.647 0.689 -0.530 0.078 D 169 167 3 170 3 0 0 74 147 -12.888 -1.666 -0.546 IL 170 170 3 170 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - u - - - ML 171 170 3 173 3 1 1 75 149 -5.943 -0.048 -5.943 -0.403 -0.050 -0.675 0.724 D 172 170 3 173 3 0 0 73 146 -12.596 -0.563 -1.630 IL 173 173 3 173 3 1 1 84 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - a - - - ML 174 173 3 176 3 1 1 73 147 -6.015 -0.045 -6.015 0.495 -0.484 -0.187 -0.004 D 175 173 3 176 3 0 0 70 143 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 82 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 64 - u - - - ML 177 176 3 179 3 1 1 72 145 -6.015 -0.045 -6.015 -0.166 -0.124 -0.750 0.675 D 178 176 3 179 3 0 0 68 141 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 81 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 65 - u - - - ML 180 179 3 182 3 1 1 70 143 -6.015 -0.045 -6.015 -0.109 -0.611 -0.303 0.684 D 181 179 3 182 3 0 0 66 138 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - c - - - ML 183 182 3 185 3 1 1 68 141 -2.272 -0.363 -6.015 -0.174 0.415 -0.356 -0.002 D 184 182 3 185 3 0 0 64 136 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 70 142 -0.701 -1.378 -14.982 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - c - - - ML 186 185 3 188 3 1 1 66 139 -6.015 -0.045 -6.015 -0.525 0.467 -0.750 0.410 D 187 185 3 188 3 0 0 62 134 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 72 - U - - - ML 189 188 3 191 3 1 1 65 137 -6.015 -0.045 -6.015 -0.594 -0.474 -0.864 1.049 D 190 188 3 191 3 0 0 61 132 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 73 - G - - - ML 192 191 3 194 3 1 1 63 135 -6.015 -0.045 -6.015 -0.310 -1.066 1.060 -0.667 D 193 191 3 194 3 0 0 59 130 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 73 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 74 - u - - - ML 195 194 3 197 3 1 1 61 132 -6.015 -0.045 -6.015 -0.452 -0.826 0.325 0.538 D 196 194 3 197 3 0 0 56 127 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 75 - C - - - ML 198 197 3 200 3 1 1 59 130 -6.015 -0.045 -6.015 -2.827 1.808 -3.070 -2.075 D 199 197 3 200 3 0 0 54 125 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 76 - U - - - ML 201 200 3 203 3 1 1 57 127 -6.015 -0.045 -6.015 -2.025 -0.954 -2.240 1.598 D 202 200 3 203 3 0 0 51 121 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 77 - G - - - ML 204 203 3 206 3 1 1 54 124 -6.015 -0.045 -6.015 -2.409 -3.427 1.851 -3.154 D 205 203 3 206 3 0 0 48 118 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 78 - A - - - ML 207 206 3 209 3 1 1 51 121 -6.015 -0.045 -6.015 1.592 -1.911 -2.021 -1.081 D 208 206 3 209 3 0 0 44 113 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 79 - c - - - ML 210 209 3 212 3 1 1 47 117 -6.015 -0.045 -6.015 -0.748 0.830 -0.466 -0.148 D 211 209 3 212 3 0 0 32 101 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 80 - u - - - ML 213 212 3 215 2 1 1 1 1 * 0.000 -0.487 0.182 -0.490 0.526 D 214 212 3 215 2 0 0 0 0 * 0.000 IL 215 215 3 215 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 72 ] - - - - - - E 216 215 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD49 ACC RF00277 DESC Small nucleolar RNA SNORD49 LENG 71 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Thu Jul 4 22:47:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00277/CM NSEQ 28 EFFN 4.269043 CKSUM 1905851644 STATS LOCAL MSV -8.0623 0.71871 STATS LOCAL VITERBI -9.0805 0.71871 STATS LOCAL FORWARD -4.0779 0.71871 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.24462 1.56450 1.31956 1.44603 1.38629 1.38629 1.38629 1.38629 0.01806 5.32545 4.34027 0.39730 1.11515 0.00000 * 1 2.16042 1.95026 1.73001 0.57057 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 2 2.36042 2.68648 0.41373 1.73545 - G - - : 1.38629 1.38629 1.38629 1.38629 0.08660 4.16961 2.69569 1.46634 0.26236 1.09861 0.40547 3 1.89353 0.82003 1.80430 1.40872 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03316 4.11617 4.11617 1.46634 0.26236 1.85102 0.17088 4 1.48762 1.49904 1.71624 0.99154 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03316 4.11617 4.11617 1.46634 0.26236 0.37710 1.15788 5 1.31221 0.86746 1.83083 1.89392 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 6 3.17163 2.83575 3.30380 0.14775 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 7 3.05632 3.76189 0.10357 3.57261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 8 0.08782 3.70003 3.47972 3.55672 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 9 3.17163 2.83575 3.30380 0.14775 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 10 3.05632 3.76189 0.10357 3.57261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 11 0.08782 3.70003 3.47972 3.55672 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 12 1.05738 1.77076 1.72819 1.18801 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 13 0.21104 3.13854 2.36426 2.93942 - A - - : 1.38629 1.38629 1.38629 1.38629 0.07025 4.16961 2.94923 1.46634 0.26236 1.09861 0.40547 14 1.72272 1.02077 2.19824 1.04952 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03263 4.13199 4.13199 1.46634 0.26236 1.68427 0.20528 15 1.82505 0.86351 1.84199 1.35244 - c - - : 1.38629 1.38629 1.38629 1.38629 0.06996 4.13199 2.96581 1.46634 0.26236 0.46388 0.99112 16 0.96807 1.73437 1.40492 1.61804 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03253 4.13486 4.13486 1.46634 0.26236 0.48434 0.95738 17 1.87044 1.09131 1.24528 1.50369 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 18 1.46768 1.93290 1.69273 0.81918 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 19 0.79000 1.84573 1.53275 1.75848 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 20 0.21457 3.12806 2.34547 2.92795 - A - - : 1.38629 1.38629 1.38629 1.38629 0.29223 1.43572 4.16961 0.73505 0.65293 1.09861 0.40547 21 2.39751 2.58231 2.91635 0.24933 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 22 0.08782 3.70003 3.47972 3.55672 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 23 3.05632 3.76189 0.10357 3.57261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 24 3.05632 3.76189 0.10357 3.57261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 25 0.08782 3.70003 3.47972 3.55672 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 26 0.08782 3.70003 3.47972 3.55672 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 27 3.05632 3.76189 0.10357 3.57261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 28 3.17163 2.83575 3.30380 0.14775 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 29 3.05632 3.76189 0.10357 3.57261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 30 3.34583 0.13276 3.51442 2.82461 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 31 3.34583 0.13276 3.51442 2.82461 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 32 3.05632 3.76189 0.10357 3.57261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 33 3.17163 2.83575 3.30380 0.14775 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 34 3.34583 0.13276 3.51442 2.82461 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 35 0.52733 1.88901 2.32989 1.82452 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 36 3.05632 3.76189 0.10357 3.57261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 37 0.08782 3.70003 3.47972 3.55672 - A - - : 1.38629 1.38629 1.38629 1.38629 0.06843 4.16961 2.98221 1.46634 0.26236 1.09861 0.40547 38 1.09753 1.90712 1.69084 1.09831 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03257 4.13376 4.13376 1.46634 0.26236 0.47625 0.97050 39 1.97860 2.66099 0.41722 2.01751 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 40 3.34583 0.13276 3.51442 2.82461 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 41 3.05632 3.76189 0.10357 3.57261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 42 0.17584 3.25487 2.57555 3.06719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 43 2.03670 1.62413 1.58014 0.76247 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 44 0.08782 3.70003 3.47972 3.55672 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 45 0.18185 3.23335 2.53600 3.04351 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 46 3.34583 0.13276 3.51442 2.82461 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 47 3.17163 2.83575 3.30380 0.14775 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 48 3.05632 3.76189 0.10357 3.57261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 49 0.08782 3.70003 3.47972 3.55672 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 50 3.34583 0.13276 3.51442 2.82461 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 51 3.05632 3.76189 0.10357 3.57261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 52 0.08782 3.70003 3.47972 3.55672 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 53 1.91558 1.56570 1.81484 0.73202 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 54 0.93682 1.94502 1.23193 1.75207 - a - - : 1.38629 1.38629 1.38629 1.38629 0.11248 3.17910 2.73699 0.10806 2.27861 1.09861 0.40547 55 1.10854 1.63192 1.88588 1.13100 - a - - : 1.38629 1.38629 1.38629 1.38629 0.05665 4.11905 3.24894 1.46634 0.26236 1.82288 0.17621 56 1.83442 0.90845 1.75337 1.33198 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03384 4.09624 4.09624 1.46634 0.26236 1.15498 0.37843 57 1.66588 1.42068 1.85405 0.88473 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03306 4.11905 4.11905 1.46634 0.26236 0.39026 1.12973 58 1.04292 1.72211 1.51603 1.38908 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 59 1.50147 1.47251 1.90646 0.91818 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 60 1.46171 1.80962 1.59621 0.91185 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 61 1.50691 1.09829 1.63271 1.38802 - c - - : 1.38629 1.38629 1.38629 1.38629 0.25163 1.57500 4.16961 0.95489 0.48590 1.09861 0.40547 62 1.75019 1.06271 1.90598 1.10243 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 63 1.79819 1.71512 1.98528 0.65948 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 64 1.60095 2.12492 0.65129 1.84845 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 65 1.69977 1.95856 1.16072 1.01348 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 66 3.34583 0.13276 3.51442 2.82461 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 67 2.78997 2.04783 2.93897 0.27886 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 68 3.05632 3.76189 0.10357 3.57261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 69 0.28264 2.71090 2.78748 2.13577 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 70 1.90470 0.81077 1.70900 1.48912 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 1.09861 0.40547 71 1.72361 1.25988 1.72619 1.02185 - u - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //