# STOCKHOLM 1.0
#=GF ID SNORD52
#=GF AC RF00276
#=GF DE Small nucleolar RNA SNORD52
#=GF AU Moxon SJ; 0000-0003-4644-1816
#=GF GA 45.0
#=GF NC 44.9
#=GF TC 45.0
#=GF PI U52
#=GF SE Moxon SJ, INFERNAL
#=GF SS Predicted; PFOLD; Moxon SJ, Daub J
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 23.00 -Z 2958934 CM SEQDB
#=GF CL CL00063
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Mus_musculus300615;
#=GF DR snoopy; Takifugu_rubripes300021;
#=GF RN [1]
#=GF RM 12215523
#=GF RT Purified box C/D snoRNPs are able to reproduce site-specific
#=GF RT 2'-O-methylation of target RNA in vitro.
#=GF RA Galardi S, Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I
#=GF RL Mol Cell Biol 2002;22:6663-6668.
#=GF RN [2]
#=GF RM 8674114
#=GF RT Site-specific ribose methylation of preribosomal RNA: a novel function for
#=GF RT small nucleolar RNAs.
#=GF RA Kiss-Laszlo Z, Henry Y, Bachellerie JP, Caizergues-Ferrer M, Kiss T
#=GF RL Cell 1996;85:1077-1088.
#=GF CC U52 belongs to the C/D class of snoRNA which contain the C (UGAUGA) and D
#=GF CC (CUGA) box motifs. Most of the members of the box C/D family function in
#=GF CC directing site-specific 2'-O-methylation of substrate RNAs [1].
#=GF WK Small_nucleolar_RNA_SNORD52
#=GF SQ 20

X96651.1/1-66              GGGAAUGAUGAUU-UCACAGACUAGAGUCUCCGAUGC-UGGUCAUGAUGUCA-AAACU--AAGUUCUGA-UC
AL773527.8/126615-126549   GGGAAUGAUGAUU-UCUCAGACUAGAGUCUCUGAUGC-UGGUCCUGAUGUCA-AAAUU--AAUUUCUGACUC
X77209.1/655-590           GAGAAUGAUGAUU-UCACAGACUAGAGUCUCUGACUC-UGCCCUUGAUGUCA-ACUAU--AAAU-CUGACUC
AF109906.1/100346-100281   GAGAGUGAUGAUU-UCACAGACUAGAGUCUCUGACGC-UGUCCUUGAUGUCA-GCUAU--AAAU-CUGACUC
AAQQ01546498.1/489-555     GAGAAUGAUGAAU-UUACAGACUAGAGUCUCUGAGGC-UGGUCCUGAUGUCA-AAAGU--AAGUUCUGACUC
AAFC03050905.1/46533-46467 GGGAAUGAUGAUU-UCUCAGACUAGAGUCUCUGAUAC-UGGUUUUGAUGUCA-AAAUU--GAUUUCUGACUC
AAYZ01082793.1/2695-2761   GGGAAUGAUGAUC-UCACAGACUAGAGUCUCUGACAC-UGGUUCUGAUGUCA-AACUU--AAGUUCUGACUC
AALT01488983.1/2001-2067   GGGAAUGAUGAUU-UCACAGACUAGAGUCUCUGACAC-UAGGCCUGAUGUCA-AAUUU--ACAUUCUGACUC
ABDC01612123.1/549-482     GGGAAUGAUGAUU-UCACAGACUAGAGUCUCUGACACAUGGUCAUGAUGUCA-AAACU--AAGUUCUGACUC
AANG01354597.1/381-449     GGGAAUGAUGAUUGUCUCAGACUAGAGUCUCUGAUGC-UGGACUUGAUGUCAAAAAUU--AAGUUCUGACUC
AANN01754372.1/2219-2152   GGGAAUGAUGAUU-CUUAAGACUAGAGUCUCUGACGC-UGGUUCUGAUGGCAGAAAUU--AGUUUCUGAUUC
AAIY01395239.1/353-290     GGGAAUGAUGAUU-UCUCAGACUAGAGUCUCUGA--C-UGGUCUUGAUGUCU-UUUUG--UUGU-CUGACUC
BX511233.10/65902-65968    UGCAGUGAUGAUU-CCAUAGACUAGAGUCUCUGAUAA-CAACAUGAAGAUCU-ACACA--UUUCUCUGAGCA
AAKN02021588.1/41753-41687 GGGAAUGAUGAUU-UCACAGACUAGAGUCUCUGACAC-UGGUUCUGAUGUCA-AAAAU--AAUGUCUGACUC
AAWR02009906.1/28300-28367 GGGAAUGAUGAUU-UCUCAGACUAGAGUCUCUGAUGC-UGGUUCUGAUGUCA-AAACUU-AAGUUCUGACUC
AAPE02062606.1/1142-1204   GGGAAUGAUGAGU-UCUCAGACUAUAGUCGCUGAUGU-UGGUUCUGAAGUGA-A------AAGUUCUGACUC
AAEX03008219.1/36845-36912 GGGAAUGAUGAUU-UCUCAGACUAGAGUCUCUGACAC-UGGUCUUGAUGUCAAAAAUU--ACGUUCUGACUC
AAPE02050090.1/12489-12422 GGGAAUGAUGAUU-UCUCAGACUAGAGUCUCUGACGC-UGGCUCUGAAGUGAAAAAUU--AAGUUCUGACUC
CAAB02010444.1/29772-29704 UGGAAUGAUGAUU-UUGCAGACUAGAGUCUCUGAAAA-UCCUGAAGUAGCUU-UCUUUUAUUGCACUGACCA
AAGW02070280.1/41124-41190 GGGGAUGAUGAUU-UCACAGACUAGAGUCUCUGACCC-UGGUCCUGAUGUCA-AAAAU--GAGUUCUGACUC
#=GC SS_cons               <<<__________._______________________.______________._____.._________>>>
#=GC RF                    GgGAAUGAUGAUU.UCaCAGACUAGAGUCUCUGAuac.UGgUcuUGAuGUCA.AaauU..aagUUCUGACuC
//
