INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD56 ACC RF00275 DESC Small nucleolar RNA SNORD56 STATES 217 NODES 66 CLEN 71 W 86 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 11 01:32:43 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00275/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 2.471191 CKSUM 2827911804 NULL 0.000 0.000 0.000 0.000 GA 36.00 TC 36.30 NC 35.90 EFP7GF -9.1872 0.71878 ECMLC 0.65799 -5.74733 3.06476 1600000 395681 0.003033 ECMGC 0.40905 -16.48902 -2.97520 1600000 100635 0.003975 ECMLI 0.64007 -3.85757 4.62145 1600000 273004 0.004396 ECMGI 0.41541 -12.18462 0.39471 1600000 74390 0.005377 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 86 105 -7.154 -7.361 -0.046 -5.776 IL 1 1 2 1 4 1 31 90 110 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 30 89 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 30 86 105 -8.536 -0.016 -6.853 -2.215 1.730 -3.046 -1.534 D 4 2 3 5 3 0 25 85 104 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 29 87 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 72 - A - - MR 6 5 3 8 5 1 29 85 104 -7.263 -0.035 -7.078 -7.291 -8.182 1.418 -1.800 -0.654 -1.303 D 7 5 3 8 5 0 23 84 103 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 27 86 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 71 u g - - MP 9 8 3 13 6 2 29 84 103 -9.190 -9.129 -0.020 -7.906 -8.185 -8.580 -4.171 -4.206 -3.900 -0.508 -2.647 -4.324 2.413 -3.435 -3.945 -0.332 -4.249 -2.306 0.847 -4.241 2.675 -2.810 ML 10 8 3 13 6 1 25 83 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 24 83 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 20 81 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 26 84 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 26 84 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 70 A U - - MP 15 14 6 19 6 2 27 82 101 -9.190 -9.129 -0.020 -7.906 -8.185 -8.580 -3.663 -2.643 -3.759 3.162 -4.477 -5.253 -0.215 -3.915 -3.608 1.245 -4.180 1.034 -0.454 -4.299 -2.106 -2.574 ML 16 14 6 19 6 1 24 81 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 22 81 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 20 80 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 25 82 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 25 82 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 69 c g - - MP 21 20 6 25 4 2 25 80 99 -7.154 -7.361 -0.046 -5.776 -2.832 -2.897 -0.282 0.482 -2.366 -3.659 2.735 -2.918 -2.945 0.615 -3.445 -1.168 1.192 -3.091 0.665 -1.973 ML 22 20 6 25 4 1 23 81 100 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 21 80 100 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 19 79 99 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 24 82 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 24 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 5 - A - - - ML 27 26 6 29 3 1 23 78 97 -8.157 -0.018 -6.811 1.346 -1.430 -1.439 -0.477 D 28 26 6 29 3 0 19 76 96 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 23 80 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - A - - - ML 30 29 3 32 3 1 22 77 96 -8.157 -0.018 -6.811 1.405 -1.786 -0.620 -1.286 D 31 29 3 32 3 0 18 75 95 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 22 79 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - u - - - ML 33 32 3 35 3 1 21 76 95 -8.536 -0.016 -6.853 -0.053 -0.405 -0.573 0.686 D 34 32 3 35 3 0 17 74 93 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 21 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 68 - A - - MR 36 35 3 38 3 1 21 75 94 -8.536 -0.016 -6.853 1.791 -2.763 -2.356 -2.345 D 37 35 3 38 3 0 15 73 92 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 20 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 67 - G - - MR 39 38 3 41 3 1 20 74 93 -8.536 -0.016 -6.853 -1.987 -3.266 1.801 -2.653 D 40 38 3 41 3 0 14 72 91 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 19 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 66 - U - - MR 42 41 3 44 3 1 19 73 92 -8.536 -0.016 -6.853 -1.849 -1.783 -2.599 1.708 D 43 41 3 44 3 0 13 71 90 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 18 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 65 - C - - MR 45 44 3 47 3 1 18 72 91 -8.536 -0.016 -6.853 -2.215 1.730 -3.046 -1.534 D 46 44 3 47 3 0 13 70 89 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 17 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 64 - U - - MR 48 47 3 50 3 1 17 71 90 -8.536 -0.016 -6.853 -1.849 -1.783 -2.599 1.708 D 49 47 3 50 3 0 12 69 88 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 16 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 63 - G - - MR 51 50 3 53 3 1 17 70 89 -8.536 -0.016 -6.853 -1.987 -3.266 1.801 -2.653 D 52 50 3 53 3 0 11 68 87 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 16 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 62 - G - - MR 54 53 3 56 3 1 16 69 88 -8.536 -0.016 -6.853 -0.952 -1.819 1.374 -0.720 D 55 53 3 56 3 0 10 67 86 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 15 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 61 - G - - MR 57 56 3 59 3 1 15 68 87 -8.536 -0.016 -6.853 -0.952 -1.819 1.374 -0.720 D 58 56 3 59 3 0 9 66 85 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 14 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 60 - U - - MR 60 59 3 62 3 1 14 66 86 -8.536 -0.016 -6.853 -1.849 -1.783 -2.599 1.708 D 61 59 3 62 3 0 8 65 84 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 13 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 59 - U - - MR 63 62 3 65 3 1 13 65 85 -8.536 -0.016 -6.853 -0.616 -0.545 -0.841 1.073 D 64 62 3 65 3 0 8 64 83 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 12 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 58 - U - - MR 66 65 3 68 3 1 13 64 84 -8.536 -0.016 -6.853 -0.972 -0.127 -1.734 1.185 D 67 65 3 68 3 0 7 63 82 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 12 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 57 - C - - MR 69 68 3 71 3 1 12 63 83 -8.536 -0.016 -6.853 -2.215 1.730 -3.046 -1.534 D 70 68 3 71 3 0 6 62 81 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 11 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 56 - A - - MR 72 71 3 74 3 1 11 62 82 -8.536 -0.016 -6.853 1.402 -1.783 -0.611 -1.282 D 73 71 3 74 3 0 5 61 80 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 10 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 55 - u - - MR 75 74 3 77 3 1 10 61 80 -8.536 -0.016 -6.853 -0.490 0.260 -0.822 0.608 D 76 74 3 77 3 0 5 60 79 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 9 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 54 - A - - MR 78 77 3 80 3 1 10 60 79 -8.536 -0.016 -6.853 1.349 -1.435 -1.443 -0.485 D 79 77 3 80 3 0 4 59 78 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 8 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 53 - G - - MR 81 80 3 83 3 1 9 59 78 -8.536 -0.016 -6.853 -1.987 -3.266 1.801 -2.653 D 82 80 3 83 3 0 3 58 77 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 8 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 52 - U - - MR 84 83 3 86 3 1 8 58 77 -8.536 -0.016 -6.853 -0.931 0.015 -1.699 1.109 D 85 83 3 86 3 0 2 57 76 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 7 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 51 - U - - MR 87 86 3 89 3 1 8 57 76 -8.536 -0.016 -6.853 -1.849 -1.783 -2.599 1.708 D 88 86 3 89 3 0 2 56 75 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 6 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 50 - G - - MR 90 89 3 92 3 1 7 56 75 -8.536 -0.016 -6.853 -1.987 -3.266 1.801 -2.653 D 91 89 3 92 3 0 1 55 74 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 6 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 49 - U - - MR 93 92 3 95 3 1 6 55 74 -8.536 -0.016 -6.853 -0.416 -1.097 -1.580 1.292 D 94 92 3 95 3 0 0 54 73 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 5 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 48 - G - - MR 96 95 3 98 3 1 6 54 73 -8.536 -0.016 -6.853 -0.396 -2.126 1.417 -1.549 D 97 95 3 98 3 0 0 53 72 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 4 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 47 - A - - MR 99 98 3 101 3 1 5 53 72 -8.536 -0.016 -6.853 1.791 -2.763 -2.356 -2.345 D 100 98 3 101 3 0 0 52 71 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 3 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 46 - G - - MR 102 101 3 104 3 1 5 52 71 -8.536 -0.016 -6.853 -0.431 -2.150 1.431 -1.573 D 103 101 3 104 3 0 0 51 70 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 3 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 45 - U - - MR 105 104 3 107 3 1 4 51 70 -8.536 -0.016 -6.853 -0.416 -1.097 -1.580 1.292 D 106 104 3 107 3 0 0 50 69 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 2 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 44 - g - - MR 108 107 3 110 3 1 3 50 69 -8.536 -0.016 -6.853 0.291 -1.151 0.567 -0.244 D 109 107 3 110 3 0 0 49 68 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 2 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 43 - A - - MR 111 110 3 113 3 1 3 49 68 -8.536 -0.016 -6.853 1.349 -0.835 -1.429 -0.941 D 112 110 3 113 3 0 0 48 67 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 42 - U - - MR 114 113 3 116 3 1 3 48 67 -8.536 -0.016 -6.853 -1.150 -0.597 -1.897 1.389 D 115 113 3 116 3 0 0 47 66 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 41 - C - - MR 117 116 3 119 3 1 2 47 66 -8.536 -0.016 -6.853 -2.215 1.730 -3.046 -1.534 D 118 116 3 119 3 0 0 46 65 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 40 - C - - MR 120 119 3 122 3 1 2 46 65 -8.536 -0.016 -6.853 -2.215 1.730 -3.046 -1.534 D 121 119 3 122 3 0 0 45 64 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 39 - A - - MR 123 122 3 125 3 1 1 45 64 -8.536 -0.016 -6.853 1.791 -2.763 -2.356 -2.345 D 124 122 3 125 3 0 0 44 63 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 38 - c - - MR 126 125 3 128 3 1 1 44 63 -3.581 -0.140 -6.853 -0.257 0.814 -1.432 0.049 D 127 125 3 128 3 0 0 42 61 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 45 64 -2.303 -0.407 -4.541 0.000 0.000 0.000 0.000 [ MATR 40 ] - 36 - U - - MR 129 128 3 131 3 1 1 43 62 -8.536 -0.016 -6.853 -1.849 -1.783 -2.599 1.708 D 130 128 3 131 3 0 0 41 60 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 35 - U - - MR 132 131 3 134 3 1 1 42 61 -8.536 -0.145 -3.430 -1.112 -0.507 -1.861 1.355 D 133 131 3 134 3 0 0 40 59 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 34 - G - - MR 135 134 3 137 3 1 1 41 60 -8.409 -0.018 -6.726 -1.704 -2.943 1.750 -2.330 D 136 134 3 137 3 0 0 39 58 -7.234 -2.411 -0.312 IR 137 137 3 137 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 33 - A - - MR 138 137 3 140 3 1 1 40 59 -8.409 -0.125 -3.638 1.743 -2.489 -2.109 -2.043 D 139 137 3 140 3 0 0 38 57 -7.234 -2.411 -0.312 IR 140 140 3 140 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 32 - C - - MR 141 140 3 143 3 1 1 39 58 -8.303 -0.019 -6.620 -1.607 1.586 -2.426 -1.048 D 142 140 3 143 3 0 0 38 57 -7.658 -0.464 -1.888 IR 143 143 3 143 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 31 - G - - MR 144 143 3 146 3 1 1 38 57 -8.536 -0.016 -6.853 -1.987 -3.266 1.801 -2.653 D 145 143 3 146 3 0 0 37 56 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 30 - A - - MR 147 146 3 149 3 1 1 37 56 -8.536 -0.016 -6.853 1.791 -2.763 -2.356 -2.345 D 148 146 3 149 3 0 0 36 55 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 29 - C - - MR 150 149 3 152 3 1 1 36 55 -8.536 -0.016 -6.853 -2.215 1.730 -3.046 -1.534 D 151 149 3 152 3 0 0 35 54 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 28 - A - - MR 153 152 3 155 3 1 1 35 54 -8.536 -0.016 -6.853 1.402 -1.783 -0.611 -1.282 D 154 152 3 155 3 0 0 34 53 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 27 - A - - MR 156 155 3 158 5 1 1 34 53 -7.263 -0.035 -7.078 -7.291 -8.182 1.025 -0.675 -0.574 -0.583 D 157 155 3 158 5 0 0 33 52 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 8 26 G C - - MP 159 158 3 163 6 2 2 33 52 -9.190 -9.129 -0.020 -7.906 -8.185 -8.580 -4.269 -0.417 -4.295 0.521 -4.973 -4.525 -0.411 -4.733 -4.146 3.472 -4.492 -0.578 -0.689 -4.069 -2.380 -3.245 ML 160 158 3 163 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 9 25 A U - - MP 165 164 6 169 6 2 2 31 50 -9.190 -9.129 -0.020 -7.906 -8.185 -8.580 -4.151 -3.095 -4.137 3.522 -4.662 -5.765 -0.338 -4.155 -4.020 0.690 -4.585 -0.517 -0.753 -4.888 -2.277 -2.954 ML 166 164 6 169 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 10 24 u a - - MP 171 170 6 175 6 2 2 29 48 -9.190 -9.129 -0.020 -7.906 -8.185 -8.580 -2.907 -2.994 -2.971 0.414 -0.042 -3.705 1.733 -2.933 -2.999 0.488 -3.492 -1.265 2.175 -3.164 1.522 -2.018 ML 172 170 6 175 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 11 23 g c - - MP 177 176 6 181 4 2 2 27 46 -7.154 -7.361 -0.046 -5.776 -3.521 0.578 -3.562 0.973 -4.153 -4.205 0.149 -3.969 -3.600 2.983 -3.996 0.631 -0.103 -3.558 -1.731 -2.534 ML 178 176 6 181 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 4 1 1 27 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 180 176 6 181 4 0 0 26 46 -4.568 -4.250 -2.265 -0.520 IL 181 181 5 181 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 182 182 6 182 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 12 - g - - - ML 183 182 6 185 3 1 1 24 43 -8.157 -0.018 -6.811 -0.104 -1.289 0.902 -0.336 D 184 182 6 185 3 0 0 23 42 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 13 - C - - - ML 186 185 3 188 3 1 1 23 42 -8.157 -0.018 -6.811 -1.406 1.404 -2.251 -0.385 D 187 185 3 188 3 0 0 22 41 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 14 - A - - - ML 189 188 3 191 3 1 1 22 41 -8.157 -0.018 -6.811 1.791 -2.763 -2.356 -2.345 D 190 188 3 191 3 0 0 21 40 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 15 - A - - - ML 192 191 3 194 3 1 1 21 40 -8.157 -0.018 -6.811 1.791 -2.763 -2.356 -2.345 D 193 191 3 194 3 0 0 20 39 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 16 - U - - - ML 195 194 3 197 3 1 1 20 39 -8.157 -0.018 -6.811 -1.121 -0.529 -1.869 1.364 D 196 194 3 197 3 0 0 19 38 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 17 - A - - - ML 198 197 3 200 3 1 1 19 37 -8.157 -0.018 -6.811 1.791 -2.763 -2.356 -2.345 D 199 197 3 200 3 0 0 18 37 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 18 - u - - - ML 201 200 3 203 3 1 1 17 36 -8.157 -0.018 -6.811 -0.564 -0.441 -0.769 1.000 D 202 200 3 203 3 0 0 17 36 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 19 - U - - - ML 204 203 3 206 3 1 1 16 35 -8.157 -0.018 -6.811 -0.825 -1.097 -0.933 1.289 D 205 203 3 206 3 0 0 16 34 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 20 - U - - - ML 207 206 3 209 3 1 1 15 33 -8.157 -0.018 -6.811 -1.849 -1.783 -2.599 1.708 D 208 206 3 209 3 0 0 15 33 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 21 - U - - - ML 210 209 3 212 3 1 1 13 31 -8.157 -0.018 -6.811 -1.849 -1.783 -2.599 1.708 D 211 209 3 212 3 0 0 13 32 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 22 - U - - - ML 213 212 3 215 2 1 1 1 1 * 0.000 -1.849 -1.783 -2.599 1.708 D 214 212 3 215 2 0 0 0 0 * 0.000 IL 215 215 3 215 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 216 215 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD56 ACC RF00275 DESC Small nucleolar RNA SNORD56 LENG 71 MAXL 155 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 11 01:32:43 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00275/CM NSEQ 7 EFFN 2.778809 CKSUM 2827911804 STATS LOCAL MSV -8.6971 0.71878 STATS LOCAL VITERBI -8.8889 0.71878 STATS LOCAL FORWARD -3.4452 0.71878 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29799 1.57581 1.46987 1.23745 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 0.00000 * 1 3.08921 0.15843 3.66393 2.58559 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 2 2.97828 1.05409 2.77810 0.61905 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 3 0.50283 2.90345 1.29390 2.71583 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 4 1.85809 0.79268 2.04855 1.33759 4 c - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 5 0.42914 2.43391 2.44619 1.74519 5 A - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 6 0.38878 2.70158 1.82654 2.36397 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 7 1.43052 1.67294 1.78553 0.90285 7 u - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 8 1.95964 3.00310 0.28391 2.87128 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 9 0.26809 3.02219 2.01177 2.94279 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 10 2.27769 1.28400 2.12527 0.69085 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 11 1.46910 2.59261 0.49834 2.43606 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 12 1.47943 2.32628 0.73143 1.64323 12 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 13 2.46256 0.37940 3.05559 1.69598 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 14 0.12486 3.43988 3.14471 3.16465 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 15 0.12486 3.43988 3.14471 3.16465 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 16 2.24237 1.77287 2.76373 0.41416 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 17 0.12486 3.43988 3.14471 3.16465 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 18 1.81696 1.70310 1.93090 0.67267 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 19 2.02478 2.20651 2.06027 0.46129 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 20 2.79977 2.73184 3.32414 0.17665 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 21 2.79977 2.73184 3.32414 0.17665 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 22 2.79977 2.73184 3.32414 0.17665 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 23 2.67596 0.49575 2.40088 1.46357 23 C - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 24 0.99075 2.29458 0.91042 2.07510 24 g - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 25 3.17471 2.33056 2.83544 0.22032 25 U - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 26 3.11228 0.26840 2.82974 2.02592 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 27 0.65548 1.86297 1.79736 1.83345 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 28 0.39084 2.69919 1.82059 2.36106 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 29 3.08921 0.15843 3.66393 2.58559 29 C - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 30 0.12486 3.43988 3.14471 3.16465 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 31 2.90364 3.80776 0.11767 3.38181 31 G - - - 1.38629 1.38629 1.38629 1.38629 0.23032 4.04724 1.66998 1.46634 0.26236 1.09861 0.40547 32 2.64332 0.24735 3.21582 2.22671 32 C - - - 1.38629 1.38629 1.38629 1.38629 0.04305 3.85997 3.85997 1.46634 0.26236 0.88784 0.53025 33 0.15473 3.24059 2.96453 2.94458 33 A - - - 1.38629 1.38629 1.38629 1.38629 0.03944 3.94587 3.94587 1.46634 0.26236 2.14215 0.12489 34 2.70165 3.57972 0.14804 3.15522 34 G - - - 1.38629 1.38629 1.38629 1.38629 0.03944 3.94587 3.94587 1.46634 0.26236 0.26762 1.44900 35 2.23544 1.75651 2.75724 0.42016 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 36 2.79977 2.73184 3.32414 0.17665 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.13649 2.20621 4.04724 0.29178 1.37410 1.09861 0.40547 37 1.58754 0.79152 2.43362 1.36768 38 c - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 38 0.12486 3.43988 3.14471 3.16465 39 A - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 39 3.08921 0.15843 3.66393 2.58559 40 C - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 40 3.08921 0.15843 3.66393 2.58559 41 C - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 41 2.26430 1.82358 2.78438 0.39618 42 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 42 0.42487 1.98130 2.44414 2.10822 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 43 1.18794 2.22154 0.96916 1.57354 44 g - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 44 1.70646 2.20593 2.54957 0.46167 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 45 1.72085 2.96740 0.36613 2.57394 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 46 0.12486 3.43988 3.14471 3.16465 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 47 1.69470 2.95004 0.37625 2.55649 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 48 1.70646 2.20593 2.54957 0.46167 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 49 2.90364 3.80776 0.11767 3.38181 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 50 2.79977 2.73184 3.32414 0.17665 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 51 2.09753 1.36911 2.63413 0.59579 52 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 52 2.90364 3.80776 0.11767 3.38181 53 G - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 53 0.42658 2.43777 2.44910 1.75136 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 54 1.76100 1.18677 1.96932 0.95876 55 u - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 55 0.39084 2.69919 1.82059 2.36106 56 A - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 56 3.08921 0.15843 3.66393 2.58559 57 C - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 57 2.12884 1.47371 2.66060 0.54121 58 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 58 1.85770 1.78203 1.98514 0.61932 59 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 59 2.79977 2.73184 3.32414 0.17665 60 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 60 2.12390 2.73160 0.40054 1.92852 61 G - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 61 2.12390 2.73160 0.40054 1.92852 62 G - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 62 2.90364 3.80776 0.11767 3.38181 63 G - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 63 2.79977 2.73184 3.32414 0.17665 64 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 64 3.08921 0.15843 3.66393 2.58559 65 C - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 65 2.79977 2.73184 3.32414 0.17665 66 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 66 2.90364 3.80776 0.11767 3.38181 67 G - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 67 0.12486 3.43988 3.14471 3.16465 68 A - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 68 1.79410 2.21525 0.52328 2.02480 69 G - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 69 2.93349 1.90861 2.70226 0.31273 70 U - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 70 2.10959 2.93891 0.27268 2.74182 71 G - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04724 4.04724 1.46634 0.26236 1.09861 0.40547 71 0.38022 2.71179 1.85162 2.37639 72 A - - : 1.38629 1.38629 1.38629 1.38629 0.01794 4.02961 * 1.46634 0.26236 0.00000 * //