INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD57 ACC RF00274 DESC Small nucleolar RNA SNORD57 STATES 220 NODES 71 CLEN 72 W 92 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 12:59:29 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00274/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 23 EFFN 3.355103 CKSUM 2347476636 NULL 0.000 0.000 0.000 0.000 GA 47.00 TC 47.10 NC 46.90 EFP7GF -10.2991 0.71873 ECMLC 0.69489 -6.01136 2.43158 1600000 423779 0.002832 ECMGC 0.40486 -18.71448 -5.18954 1600000 95529 0.004187 ECMLI 0.63933 -4.18336 4.48388 1600000 305977 0.003922 ECMGI 0.44176 -12.56074 -1.00964 1600000 65791 0.006080 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 92 116 -7.438 -7.645 -0.075 -4.654 IL 1 1 2 1 4 1 30 95 119 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 29 94 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 5 1 31 92 116 -7.472 -0.030 -7.287 -7.499 -8.391 -0.941 -0.872 -1.116 1.305 D 4 2 3 5 5 0 23 90 115 -5.183 -1.027 -4.444 -2.819 -1.765 IL 5 5 3 5 5 1 28 92 116 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 94 G C - - MP 6 5 3 10 6 2 30 91 115 -9.298 -9.237 -0.018 -8.014 -8.294 -8.689 -4.434 -3.054 -4.375 0.408 -4.649 -4.612 0.619 -4.690 -4.313 3.457 -4.623 -0.749 -0.445 -4.172 -2.048 -3.295 ML 7 5 3 10 6 1 26 89 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 25 89 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 21 87 111 -9.341 -8.039 -3.836 -4.518 -4.536 -0.255 IL 10 10 5 10 6 1 27 90 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 27 90 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 93 g c - - MP 12 11 6 16 6 2 29 89 113 -9.298 -9.237 -0.018 -8.014 -8.294 -8.689 -3.521 -2.765 -3.469 0.857 -3.338 -4.143 1.398 -3.660 -3.647 2.812 -4.040 -0.530 0.904 -3.490 -0.014 -2.416 ML 13 11 6 16 6 1 25 88 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 23 87 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 21 85 110 -9.341 -8.039 -3.836 -4.518 -4.536 -0.255 IL 16 16 5 16 6 1 26 88 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 26 88 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 92 A U - - MP 18 17 6 22 4 2 27 87 111 -7.402 -7.609 -0.039 -6.023 -4.179 -3.048 -4.230 3.483 -5.065 -5.971 -0.691 -4.312 -4.053 1.151 -4.637 -0.453 -0.987 -4.962 -2.621 -3.004 ML 19 17 6 22 4 1 24 87 111 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 4 1 22 86 110 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 21 17 6 22 4 0 20 85 109 -4.843 -4.524 -2.540 -0.416 IL 22 22 5 22 4 1 25 88 112 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 23 23 6 23 3 1 25 87 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - g - - - ML 24 23 6 26 3 1 25 85 109 -8.391 -0.015 -7.045 0.323 -1.089 0.629 -0.449 D 25 23 6 26 3 0 20 83 107 -6.551 -2.064 -0.415 IL 26 26 3 26 3 1 24 86 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - g - - - ML 27 26 3 29 3 1 25 84 108 -8.391 -0.015 -7.045 0.513 -1.890 0.928 -1.321 D 28 26 3 29 3 0 19 82 106 -6.551 -2.064 -0.415 IL 29 29 3 29 3 1 24 85 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 30 29 3 32 3 1 24 83 107 -8.391 -0.015 -7.045 -1.412 -1.493 -1.784 1.575 D 31 29 3 32 3 0 19 81 105 -6.551 -2.064 -0.415 IL 32 32 3 32 3 1 23 84 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 33 32 3 35 3 1 23 82 106 -8.391 -0.015 -7.045 -1.692 -3.266 1.779 -2.688 D 34 32 3 35 3 0 18 80 104 -6.551 -2.064 -0.415 IL 35 35 3 35 3 1 22 83 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 36 35 3 38 3 1 22 81 105 -8.391 -0.015 -7.045 1.852 -3.231 -2.781 -2.862 D 37 35 3 38 3 0 18 79 103 -6.551 -2.064 -0.415 IL 38 38 3 38 3 1 22 82 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 39 38 3 41 3 1 21 80 104 -8.391 -0.015 -7.045 -1.314 -1.438 -1.570 1.532 D 40 38 3 41 3 0 17 78 103 -6.551 -1.093 -0.942 IL 41 41 3 41 3 1 21 81 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 42 41 3 44 3 1 20 79 103 -8.425 -0.015 -7.079 -2.518 -3.859 1.868 -3.237 D 43 41 3 44 3 0 16 77 101 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 20 80 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 45 44 3 47 3 1 19 78 102 -8.425 -0.118 -3.722 1.664 -2.194 -2.099 -1.397 D 46 44 3 47 3 0 15 76 101 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 19 79 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - a - - - ML 48 47 3 50 3 1 19 77 101 -8.323 -0.016 -6.977 0.726 -1.198 0.133 -0.299 D 49 47 3 50 3 0 15 75 100 -7.077 -0.664 -1.469 IL 50 50 3 50 3 1 18 78 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - c - - - ML 51 50 3 53 3 1 18 76 100 -8.425 -0.015 -7.079 -0.347 0.931 -0.994 -0.313 D 52 50 3 53 3 0 13 74 98 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 17 77 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - u - - - ML 54 53 3 56 3 1 17 75 99 -8.425 -0.015 -7.079 -0.060 -0.549 -0.321 0.638 D 55 53 3 56 3 0 12 73 97 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 17 76 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - g - - - ML 57 56 3 59 3 1 17 74 98 -8.425 -0.048 -5.052 0.086 -0.774 0.552 -0.171 D 58 56 3 59 3 0 12 72 96 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 16 75 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - u - - - ML 60 59 3 62 3 1 16 73 97 -8.392 -0.015 -7.046 -0.227 -0.201 -0.912 0.802 D 61 59 3 62 3 0 11 71 95 -6.541 -1.104 -0.932 IL 62 62 3 62 3 1 15 74 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - c - - - ML 63 62 3 65 3 1 16 72 96 -5.429 -0.045 -7.079 -0.820 0.837 -1.263 0.299 D 64 62 3 65 3 0 10 70 94 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 14 73 97 -1.532 -0.734 -4.233 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - U - - - ML 66 65 3 68 3 1 15 71 95 -3.099 -0.191 -7.079 -1.548 -0.852 -2.299 1.537 D 67 65 3 68 3 0 9 68 93 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 14 71 96 -1.480 -0.725 -4.776 0.000 0.000 0.000 0.000 [ MATL 20 ] 25 - u - - - ML 69 68 3 71 3 1 14 69 93 -5.407 -0.045 -7.079 -0.495 -0.080 -0.830 0.833 D 70 68 3 71 3 0 8 67 92 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 13 71 95 -1.260 -0.902 -4.403 0.000 0.000 0.000 0.000 [ MATL 21 ] 29 - a - - - ML 72 71 3 74 3 1 13 68 92 -8.425 -0.015 -7.079 0.766 -0.629 -0.355 -0.199 D 73 71 3 74 3 0 8 66 90 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 12 69 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 30 - g - - - ML 75 74 3 77 3 1 12 67 91 -8.425 -0.015 -7.079 -0.182 -0.491 0.641 -0.238 D 76 74 3 77 3 0 7 65 89 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 11 68 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 31 - C - - - ML 78 77 3 80 3 1 12 66 90 -8.425 -0.015 -7.079 -2.857 1.825 -3.672 -2.061 D 79 77 3 80 3 0 6 64 88 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 11 67 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 32 - C - - - ML 81 80 3 83 3 1 11 65 89 -8.425 -0.015 -7.079 -2.857 1.825 -3.672 -2.061 D 82 80 3 83 3 0 6 63 87 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 10 66 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 33 - U - - - ML 84 83 3 86 3 1 10 64 88 -8.425 -0.015 -7.079 -2.363 -2.212 -3.128 1.797 D 85 83 3 86 3 0 5 62 86 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 9 65 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 34 - G - - - ML 87 86 3 89 3 1 9 63 87 -8.425 -0.015 -7.079 -2.518 -3.859 1.868 -3.237 D 88 86 3 89 3 0 5 61 85 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 8 64 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 35 - A - - - ML 90 89 3 92 3 1 8 62 86 -8.425 -0.015 -7.079 1.859 -3.298 -2.843 -2.936 D 91 89 3 92 3 0 4 60 84 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 8 63 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 36 - C - - - ML 93 92 3 95 3 1 7 61 85 -8.425 -0.104 -3.910 -1.058 1.348 -2.170 -0.410 D 94 92 3 95 3 0 3 59 83 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 7 62 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 37 - C - - - ML 96 95 3 98 3 1 7 60 84 -8.337 -0.016 -6.991 -0.924 1.120 -1.159 -0.232 D 97 95 3 98 3 0 3 58 82 -6.983 -2.496 -0.295 IL 98 98 3 98 3 1 7 61 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 38 - U - - - ML 99 98 3 101 3 1 6 59 83 -8.337 -0.016 -6.991 -0.775 -0.156 -1.664 1.139 D 100 98 3 101 3 0 3 57 82 -6.983 -0.721 -1.375 IL 101 101 3 101 3 1 6 60 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 39 - U - - - ML 102 101 3 104 3 1 5 58 82 -5.434 -0.095 -4.615 -0.998 -0.318 -1.553 1.236 D 103 101 3 104 3 0 1 56 80 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 5 59 83 -1.532 -0.735 -4.232 0.000 0.000 0.000 0.000 [ MATL 32 ] 41 - g - - - ML 105 104 3 107 3 1 5 57 81 -8.376 -0.015 -7.030 -0.163 0.122 0.369 -0.460 D 106 104 3 107 3 0 1 55 79 -6.685 -2.198 -0.373 IL 107 107 3 107 3 1 5 58 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 42 - u - - - ML 108 107 3 110 3 1 4 56 80 -8.376 -0.084 -4.218 0.260 -0.050 -1.200 0.486 D 109 107 3 110 3 0 0 54 79 -6.685 -0.954 -1.077 IL 110 110 3 110 3 1 4 57 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 43 - a - - - ML 111 110 3 113 3 1 4 55 79 -8.359 -0.016 -7.013 0.842 -0.954 -0.380 -0.115 D 112 110 3 113 3 0 0 53 77 -6.822 -2.335 -0.335 IL 113 113 3 113 3 1 4 56 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 44 - g - - - ML 114 113 3 116 3 1 3 54 78 -8.359 -0.057 -4.815 0.624 -1.819 0.811 -1.248 D 115 113 3 116 3 0 0 52 76 -6.822 -2.335 -0.335 IL 116 116 3 116 3 1 3 55 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 45 - A - - - ML 117 116 3 119 3 1 3 53 77 -8.318 -0.016 -6.972 1.006 -0.673 -0.875 -0.288 D 118 116 3 119 3 0 0 51 76 -7.104 -0.648 -1.495 IL 119 119 3 119 3 1 2 54 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 46 - g - - - ML 120 119 3 122 3 1 2 52 76 -8.425 -0.060 -4.735 -0.031 -0.753 0.765 -0.458 D 121 119 3 122 3 0 0 50 74 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 2 53 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 47 - U - - - ML 123 122 3 125 3 1 2 51 75 -8.381 -0.015 -7.035 -0.170 -1.183 -1.601 1.227 D 124 122 3 125 3 0 0 49 73 -6.643 -2.156 -0.385 IL 125 125 3 125 3 1 1 52 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 48 - G - - - ML 126 125 3 128 3 1 1 50 74 -8.381 -0.076 -4.362 -1.400 -2.353 1.580 -1.200 D 127 125 3 128 3 0 0 48 72 -6.643 -2.156 -0.385 IL 128 128 3 128 3 1 1 51 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 49 - G - - - ML 129 128 3 131 3 1 2 49 73 -8.320 -0.016 -6.974 -1.319 -2.933 1.711 -2.361 D 130 128 3 131 3 0 0 47 71 -7.092 -2.605 -0.272 IL 131 131 3 131 3 1 1 50 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 50 - A - - - ML 132 131 3 134 3 1 2 48 72 -8.320 -0.016 -6.974 1.305 -1.832 -0.240 -1.317 D 133 131 3 134 3 0 0 46 71 -7.092 -0.655 -1.484 IL 134 134 3 134 3 1 1 49 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 51 - G - - - ML 135 134 3 137 3 1 2 47 71 -8.425 -0.015 -7.079 -0.624 -2.056 1.426 -1.239 D 136 134 3 137 3 0 0 45 69 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 48 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 52 - G - - - ML 138 137 3 140 3 1 1 46 70 -8.425 -0.066 -4.583 -2.518 -3.859 1.868 -3.237 D 139 137 3 140 3 0 0 44 68 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 47 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 53 - C - - - ML 141 140 3 143 3 1 1 45 69 -3.812 -0.118 -7.028 -0.841 1.031 -0.616 -0.421 D 142 140 3 143 3 0 0 42 66 -6.697 -2.210 -0.369 IL 143 143 3 143 3 1 1 46 71 -1.233 -0.900 -4.694 0.000 0.000 0.000 0.000 [ MATL 45 ] 58 - A - - - ML 144 143 3 146 3 1 1 43 67 -8.374 -0.214 -2.892 1.046 -0.911 -0.749 -0.307 D 145 143 3 146 3 0 0 41 65 -6.697 -2.210 -0.369 IL 146 146 3 146 3 1 1 44 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 59 - A - - - ML 147 146 3 149 3 1 1 42 66 -8.178 -0.172 -3.195 1.402 -1.521 -1.512 -0.602 D 148 146 3 149 3 0 0 40 64 -7.758 -3.271 -0.165 IL 149 149 3 149 3 1 1 43 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 60 - a - - - ML 150 149 3 152 3 1 1 41 66 -5.071 -0.058 -6.680 0.817 -0.443 -1.039 0.023 D 151 149 3 152 3 0 0 39 64 -8.201 -0.267 -2.593 IL 152 152 3 152 3 1 1 44 68 -1.169 -0.972 -4.465 0.000 0.000 0.000 0.000 [ MATL 48 ] 65 - A - - - ML 153 152 3 155 3 1 1 39 64 -8.425 -0.015 -7.079 1.571 -1.928 -1.901 -1.004 D 154 152 3 155 3 0 0 38 62 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 41 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 66 - A - - - ML 156 155 3 158 3 1 1 38 63 -5.407 -0.045 -7.079 1.270 -0.863 -1.475 -0.560 D 157 155 3 158 3 0 0 37 61 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 42 67 -1.073 -1.053 -4.553 0.000 0.000 0.000 0.000 [ MATL 50 ] 72 - A - - - ML 159 158 3 161 3 1 1 34 53 -8.425 -0.043 -5.246 1.859 -3.298 -2.843 -2.936 D 160 158 3 161 3 0 0 33 52 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 73 - A - - - ML 162 161 3 164 3 1 1 33 52 -8.397 -0.015 -7.051 1.199 -1.385 -0.693 -0.510 D 163 161 3 164 3 0 0 32 51 -6.486 -1.170 -0.877 IL 164 164 3 164 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 74 - C - - - ML 165 164 3 167 3 1 1 32 51 -8.425 -0.015 -7.079 -2.338 1.716 -3.181 -1.300 D 166 164 3 167 3 0 0 31 50 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 75 - U - - - ML 168 167 3 170 3 1 1 31 50 -8.425 -0.015 -7.079 -2.363 -2.212 -3.128 1.797 D 169 167 3 170 3 0 0 30 49 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 76 - G - - - ML 171 170 3 173 3 1 1 30 49 -8.425 -0.015 -7.079 -2.518 -3.859 1.868 -3.237 D 172 170 3 173 3 0 0 29 48 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 77 - A - - - ML 174 173 3 176 3 1 1 29 48 -8.425 -0.015 -7.079 1.694 -2.493 -1.497 -2.100 D 175 173 3 176 3 0 0 28 47 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 78 - U - - - ML 177 176 3 179 3 1 1 28 46 -8.425 -0.015 -7.079 -2.363 -2.212 -3.128 1.797 D 178 176 3 179 3 0 0 27 46 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 79 - U - - - ML 180 179 3 182 3 1 1 26 45 -8.425 -0.015 -7.079 -2.363 -2.212 -3.128 1.797 D 181 179 3 182 3 0 0 25 44 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 80 - U - - - ML 183 182 3 185 3 1 1 25 44 -8.425 -0.015 -7.079 -2.363 -2.212 -3.128 1.797 D 184 182 3 185 3 0 0 24 43 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 81 - A - - - ML 186 185 3 188 3 1 1 24 43 -8.425 -0.015 -7.079 1.859 -3.298 -2.843 -2.936 D 187 185 3 188 3 0 0 23 42 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 82 - A - - - ML 189 188 3 191 3 1 1 23 42 -8.425 -0.015 -7.079 1.859 -3.298 -2.843 -2.936 D 190 188 3 191 3 0 0 22 41 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 83 - U - - - ML 192 191 3 194 3 1 1 22 41 -8.425 -0.015 -7.079 -2.363 -2.212 -3.128 1.797 D 193 191 3 194 3 0 0 21 40 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 84 - G - - - ML 195 194 3 197 3 1 1 21 39 -8.425 -0.015 -7.079 -2.518 -3.859 1.868 -3.237 D 196 194 3 197 3 0 0 20 39 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 85 - A - - - ML 198 197 3 200 3 1 1 20 38 -8.425 -0.015 -7.079 1.859 -3.298 -2.843 -2.936 D 199 197 3 200 3 0 0 19 38 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 86 - G - - - ML 201 200 3 203 3 1 1 18 37 -8.425 -0.015 -7.079 -2.518 -3.859 1.868 -3.237 D 202 200 3 203 3 0 0 18 37 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 87 - C - - - ML 204 203 3 206 3 1 1 17 36 -8.425 -0.015 -7.079 -1.775 1.598 -1.941 -1.252 D 205 203 3 206 3 0 0 17 35 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 88 - C - - - ML 207 206 3 209 3 1 1 16 34 -8.425 -0.015 -7.079 -2.857 1.825 -3.672 -2.061 D 208 206 3 209 3 0 0 16 34 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 89 - U - - - ML 210 209 3 212 3 1 1 14 33 -8.425 -0.015 -7.079 -2.363 -2.212 -3.128 1.797 D 211 209 3 212 3 0 0 15 33 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 90 - G - - - ML 213 212 3 215 3 1 1 13 31 -8.425 -0.015 -7.079 -1.378 -3.069 1.731 -2.506 D 214 212 3 215 3 0 0 13 32 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 91 - A - - - ML 216 215 3 218 2 1 1 1 1 * 0.000 1.859 -3.298 -2.843 -2.936 D 217 215 3 218 2 0 0 0 0 * 0.000 IL 218 218 3 218 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 219 218 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD57 ACC RF00274 DESC Small nucleolar RNA SNORD57 LENG 72 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 12:59:29 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00274/CM NSEQ 23 EFFN 3.680786 CKSUM 2347476636 STATS LOCAL MSV -8.3076 0.71873 STATS LOCAL VITERBI -9.2881 0.71873 STATS LOCAL FORWARD -3.6345 0.71873 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.24791 1.64272 1.37338 1.32353 1.38629 1.38629 1.38629 1.38629 0.05474 4.26574 3.23842 1.46634 0.26236 0.00000 * 1 2.09237 2.02075 2.18150 0.46017 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.02923 4.24023 4.24023 1.46634 0.26236 1.56727 0.23397 2 2.36935 2.28905 0.30422 2.69717 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02923 4.24023 4.24023 1.46634 0.26236 1.56727 0.23397 3 2.02565 1.73782 0.69694 1.63949 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.02923 4.24023 4.24023 1.46634 0.26236 1.56727 0.23397 4 0.31148 3.21287 1.71451 3.05039 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.02923 4.24023 4.24023 1.46634 0.26236 1.56727 0.23397 5 1.16571 2.16508 0.93000 1.72035 5 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02923 4.24023 4.24023 1.46634 0.26236 1.56727 0.23397 6 1.02469 2.76395 0.72359 2.37471 6 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02923 4.24023 4.24023 1.46634 0.26236 1.56727 0.23397 7 2.44239 2.48650 2.67395 0.27330 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02923 4.24023 4.24023 1.46634 0.26236 1.56727 0.23397 8 2.62819 3.75187 0.14001 3.35340 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02923 4.24023 4.24023 1.46634 0.26236 1.56727 0.23397 9 0.09059 3.74283 3.42097 3.49862 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02923 4.24023 4.24023 1.46634 0.26236 1.56727 0.23397 10 2.37173 2.44675 2.51638 0.30198 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02923 4.24023 4.24023 1.46634 0.26236 0.53996 0.87413 11 3.24341 4.18458 0.08100 3.74865 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 12 0.21717 2.97765 2.91839 2.40491 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.10712 4.26574 2.43563 1.46634 0.26236 1.09861 0.40547 13 0.87391 2.24772 1.28454 1.60810 13 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03078 4.18940 4.18940 1.46634 0.26236 0.27823 1.41519 14 1.64860 0.71728 2.09270 1.62836 14 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 15 1.43452 1.77602 1.60464 0.93778 15 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 16 1.33478 1.93511 0.98518 1.51867 16 g - - _ 1.38629 1.38629 1.38629 1.38629 0.05396 4.26574 3.25731 1.46634 0.26236 1.09861 0.40547 17 1.55429 1.52457 2.02905 0.82215 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02921 4.24098 4.24098 1.46634 0.26236 0.54788 0.86316 18 2.00004 0.78276 2.28879 1.18372 18 c - - _ 1.38629 1.38629 1.38629 1.38629 0.05118 3.32827 4.26574 0.65685 0.73081 1.09861 0.40547 19 2.53823 2.00238 3.05999 0.30233 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.16298 1.99250 4.26574 0.53027 0.88781 1.09861 0.40547 20 1.75365 1.43664 1.96975 0.79931 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05160 3.31739 4.26574 1.21394 0.35243 1.09861 0.40547 21 0.84575 1.82854 1.63450 1.53681 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 22 1.53136 1.72911 0.92029 1.57065 30 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 23 3.50386 0.10615 4.05954 2.93041 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 24 3.50386 0.10615 4.05954 2.93041 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 25 3.13815 3.01574 3.67185 0.12534 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 26 3.24341 4.18458 0.08100 3.74865 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 27 0.08621 3.79008 3.46440 3.55045 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 28 2.16868 0.42879 2.96348 1.69972 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.09609 4.26574 2.55647 1.46634 0.26236 1.09861 0.40547 29 2.08183 0.58278 2.21368 1.57188 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03045 4.20009 4.20009 1.46634 0.26236 2.01822 0.14259 30 1.96326 1.49383 2.59023 0.57967 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03045 4.20009 4.20009 1.46634 0.26236 0.30895 1.32507 31 2.13218 1.61194 2.50504 0.51041 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.08965 3.33039 2.99640 0.65807 0.72950 1.09861 0.40547 32 1.51864 1.28850 1.11002 1.73867 41 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02956 4.22915 4.22915 1.46634 0.26236 1.71533 0.19833 33 1.20382 1.41454 2.24429 1.04721 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.08208 4.22915 2.74514 1.46634 0.26236 0.44599 1.02218 34 0.79195 2.06736 1.65240 1.47434 43 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02994 4.21666 4.21666 1.46634 0.26236 1.85796 0.16959 35 0.94528 2.71300 0.80525 2.32162 44 g - - _ 1.38629 1.38629 1.38629 1.38629 0.06132 4.21666 3.10717 1.46634 0.26236 1.85796 0.16959 36 0.67377 1.86186 2.01280 1.60336 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03088 4.18623 4.18623 1.46634 0.26236 0.27033 1.44024 37 1.42189 1.91820 0.83277 1.73146 46 g - - _ 1.38629 1.38629 1.38629 1.38629 0.06241 4.26574 3.06907 1.46634 0.26236 1.09861 0.40547 38 1.51671 2.25532 2.54852 0.51495 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23278 4.23278 1.46634 0.26236 1.66942 0.20869 39 2.43270 3.09909 0.27110 2.25790 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.07600 4.23278 2.83580 1.46634 0.26236 1.66942 0.20869 40 2.35840 3.51305 0.18452 3.12084 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03084 4.18761 4.18761 1.46634 0.26236 2.12250 0.12753 41 0.46403 2.72284 1.54969 2.37243 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03084 4.18761 4.18761 1.46634 0.26236 0.27373 1.42936 42 1.84922 2.86929 0.37906 2.28874 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 43 3.24341 4.18458 0.08100 3.74865 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.06720 4.26574 2.97692 1.46634 0.26236 1.09861 0.40547 44 2.02504 0.64253 1.82027 1.71440 53 C - - _ 1.38629 1.38629 1.38629 1.38629 0.10829 2.42978 4.22813 0.89211 0.52728 1.72785 0.19561 45 0.64638 2.03497 1.92084 1.61498 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.18164 4.22813 1.88705 1.46634 0.26236 1.72785 0.19561 46 0.39543 2.48815 2.48716 1.83008 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.15464 4.08086 2.06845 1.46634 0.26236 2.70945 0.06889 47 0.80625 1.69683 2.13226 1.37976 60 a - - _ 1.38629 1.38629 1.38629 1.38629 0.06878 3.04703 3.96490 1.40978 0.27997 0.09763 2.37502 48 0.28020 2.78555 2.77299 2.11864 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 49 0.48683 1.99992 2.45965 1.80413 66 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05160 3.31739 4.26574 1.57208 0.23271 1.09861 0.40547 50 0.08621 3.79008 3.46440 3.55045 72 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04967 4.26574 3.36938 1.46634 0.26236 1.09861 0.40547 51 0.53878 2.38582 1.87945 1.76110 73 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02909 4.24516 4.24516 1.46634 0.26236 0.59669 0.79991 52 3.12045 0.17869 3.70174 2.35578 74 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 53 3.13815 3.01574 3.67185 0.12534 75 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 54 3.24341 4.18458 0.08100 3.74865 76 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 55 0.19777 3.19668 2.45896 2.93702 77 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 56 3.13815 3.01574 3.67185 0.12534 78 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 57 3.13815 3.01574 3.67185 0.12534 79 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 58 3.13815 3.01574 3.67185 0.12534 80 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 59 0.08621 3.79008 3.46440 3.55045 81 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 60 0.08621 3.79008 3.46440 3.55045 82 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 61 3.13815 3.01574 3.67185 0.12534 83 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 62 3.24341 4.18458 0.08100 3.74865 84 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 63 0.08621 3.79008 3.46440 3.55045 85 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 64 3.24341 4.18458 0.08100 3.74865 86 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 65 2.72617 0.25239 2.78469 2.34508 87 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 66 3.50386 0.10615 4.05954 2.93041 88 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 67 3.13815 3.01574 3.67185 0.12534 89 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 68 2.39497 3.60653 0.17232 3.21973 90 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02848 4.26574 4.26574 1.46634 0.26236 1.09861 0.40547 69 0.08621 3.79008 3.46440 3.55045 91 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05474 4.26574 3.23842 1.46634 0.26236 1.09861 0.40547 70 3.25420 1.96079 3.00871 0.25970 92 U - - > 1.38629 1.38629 1.38629 1.38629 0.02923 4.24023 4.24023 1.46634 0.26236 1.56727 0.23397 71 2.02458 0.76646 1.45574 1.77156 93 c - - > 1.38629 1.38629 1.38629 1.38629 0.02923 4.24023 4.24023 1.46634 0.26236 1.56727 0.23397 72 2.92881 0.34504 2.17148 2.08476 94 C - - > 1.38629 1.38629 1.38629 1.38629 0.01472 4.22572 * 1.46634 0.26236 0.00000 * //