INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD59 ACC RF00273 DESC Small nucleolar RNA SNORD59 STATES 223 NODES 71 CLEN 73 W 93 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 21:33:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00273/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 24 EFFN 2.950195 CKSUM 4037578250 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 45.30 NC 44.90 EFP7GF -9.2932 0.71874 ECMLC 0.65747 -5.61285 2.93245 1600000 330498 0.003631 ECMGC 0.39587 -17.01573 -3.21172 1600000 94475 0.004234 ECMLI 0.64736 -3.20717 5.09166 1600000 258439 0.004643 ECMGI 0.44719 -10.93492 0.55643 1600000 68208 0.005864 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 93 118 -9.259 -9.198 -0.049 -5.382 -8.254 -8.649 IL 1 1 2 1 6 1 31 95 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 31 95 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 86 c g - - MP 3 2 3 7 6 4 31 94 118 -9.230 -9.169 -0.019 -7.945 -8.225 -8.620 -2.525 -2.626 -0.668 0.679 -1.305 -3.461 2.563 -2.752 -2.686 0.731 -3.221 -0.962 1.641 -2.816 -0.168 -1.753 ML 4 2 3 7 6 1 29 92 117 -6.623 -6.969 -0.891 -1.378 -6.819 -4.349 -0.027 -0.419 -0.630 0.700 MR 5 2 3 7 6 1 28 92 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 25 90 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 30 93 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 30 93 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 85 C G - - MP 9 8 6 13 6 3 29 92 116 -9.259 -9.198 -0.019 -7.975 -8.254 -8.649 -4.739 -4.745 -4.389 -0.915 -3.019 -4.762 3.549 -3.851 -4.436 -0.737 -4.691 -2.746 0.506 -4.769 0.028 -3.258 ML 10 8 6 13 6 1 28 91 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 27 90 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 25 88 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 28 91 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 28 91 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 84 U A - - MP 15 14 6 19 4 2 27 90 114 -7.315 -7.522 -0.506 -1.816 -3.667 -3.675 -3.718 -0.160 -3.059 -4.455 1.127 -3.640 -3.732 0.016 -4.224 -1.820 3.262 -3.905 -0.367 -0.774 ML 16 14 6 19 4 1 27 89 114 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 4 1 26 89 113 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 18 14 6 19 4 0 24 88 112 -4.568 -4.250 -2.265 -0.520 IL 19 19 5 19 4 1 27 91 115 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 1 27 90 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 21 20 6 23 3 1 26 88 112 -5.069 -0.059 -6.601 -1.346 -1.367 -2.072 1.576 D 22 20 6 23 3 0 24 86 111 -7.108 -0.221 -2.891 IL 23 23 3 23 3 1 26 88 112 -2.040 -0.504 -4.278 0.000 0.000 0.000 0.000 [ MATR 5 ] - 83 - A - - MR 24 23 3 26 5 1 25 87 111 -7.398 -0.032 -7.213 -7.425 -8.317 1.536 -2.070 -0.903 -1.614 D 25 23 3 26 5 0 21 85 110 -5.352 -0.707 -2.978 -4.409 -2.404 IR 26 26 3 26 5 1 24 87 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 82 C G - - MP 27 26 3 31 4 2 24 86 110 -7.315 -7.522 -0.041 -5.936 -4.257 -4.232 -4.031 -0.407 -2.788 -4.510 3.276 -3.560 -4.045 -0.217 -4.381 -2.200 1.224 -4.345 0.495 -2.882 ML 28 26 3 31 4 1 22 85 110 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 4 1 20 85 109 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 3 31 4 0 18 84 108 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 23 87 111 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 23 86 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - a - - - ML 33 32 6 35 3 1 22 83 108 -8.308 -0.016 -6.962 0.406 -0.656 -0.227 0.246 D 34 32 6 35 3 0 18 82 106 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 22 85 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - a - - - ML 36 35 3 38 3 1 22 82 107 -8.308 -0.016 -6.962 0.160 -0.006 -0.113 -0.055 D 37 35 3 38 3 0 17 81 105 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 21 84 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 39 38 3 41 3 1 21 81 106 -8.308 -0.016 -6.962 -2.140 -2.025 -2.899 1.763 D 40 38 3 41 3 0 16 80 104 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 20 83 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 42 41 3 44 3 1 20 80 105 -8.308 -0.016 -6.962 -2.293 -3.610 1.843 -2.994 D 43 41 3 44 3 0 15 79 103 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 19 82 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 45 44 3 47 3 1 19 79 104 -8.308 -0.016 -6.962 1.833 -3.068 -2.632 -2.682 D 46 44 3 47 3 0 15 78 102 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 19 81 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 48 47 3 50 3 1 18 78 103 -8.308 -0.016 -6.962 -1.657 -1.304 -2.402 1.627 D 49 47 3 50 3 0 14 77 101 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 18 80 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 51 50 3 53 3 1 17 77 102 -8.308 -0.016 -6.962 -1.394 -2.012 1.633 -1.890 D 52 50 3 53 3 0 13 76 100 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 17 79 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 54 53 3 56 3 1 16 76 101 -8.308 -0.059 -4.758 1.646 -1.740 -1.942 -1.682 D 55 53 3 56 3 0 13 75 99 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 16 78 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - u - - - ML 57 56 3 59 3 1 15 75 100 -8.266 -0.017 -6.920 -0.260 -0.738 0.007 0.642 D 58 56 3 59 3 0 12 73 98 -6.596 -2.109 -0.400 IL 59 59 3 59 3 1 15 77 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 60 59 3 62 3 1 14 74 99 -8.266 -0.416 -2.016 -1.396 -0.888 -2.141 1.512 D 61 59 3 62 3 0 12 72 97 -6.596 -2.109 -0.400 IL 62 62 3 62 3 1 15 76 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - u - - - ML 63 62 3 65 3 1 15 74 98 -1.741 -0.535 -6.526 0.338 -0.570 -0.723 0.542 D 64 62 3 65 3 0 11 71 95 -8.197 -0.268 -2.588 IL 65 65 3 65 3 1 14 74 98 -1.316 -0.807 -5.232 0.000 0.000 0.000 0.000 [ MATL 18 ] 22 - A - - - ML 66 65 3 68 3 1 14 71 96 -8.308 -0.016 -6.962 1.134 -0.893 -1.053 -0.351 D 67 65 3 68 3 0 8 69 94 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 13 72 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 23 - c - - - ML 69 68 3 71 3 1 13 70 95 -8.308 -0.016 -6.962 -0.019 0.339 -0.196 -0.193 D 70 68 3 71 3 0 7 68 93 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 12 71 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 24 - a - - - ML 72 71 3 74 3 1 12 69 94 -8.308 -0.016 -6.962 0.439 0.219 -1.022 -0.017 D 73 71 3 74 3 0 6 67 92 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 11 70 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 25 - u - - - ML 75 74 3 77 3 1 11 68 92 -8.308 -0.016 -6.962 0.391 -0.341 -1.144 0.533 D 76 74 3 77 3 0 6 66 91 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 10 69 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 26 - u - - - ML 78 77 3 80 3 1 11 67 91 -8.308 -0.047 -5.117 0.388 -1.020 -1.286 0.838 D 79 77 3 80 3 0 5 65 90 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 10 68 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 27 - u - - - ML 81 80 3 83 3 1 11 66 90 -8.278 -0.017 -6.932 0.143 0.172 -0.969 0.331 D 82 80 3 83 3 0 4 64 89 -6.489 -2.002 -0.436 IL 83 83 3 83 3 1 9 67 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 28 - U - - - ML 84 83 3 86 3 1 10 65 89 -8.278 -0.017 -6.932 -2.081 -1.976 -2.839 1.753 D 85 83 3 86 3 0 4 63 88 -6.489 -2.002 -0.436 IL 86 86 3 86 3 1 9 66 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 29 - G - - - ML 87 86 3 89 3 1 9 64 88 -8.278 -0.017 -6.932 -1.261 -2.852 1.695 -2.278 D 88 86 3 89 3 0 3 62 87 -6.489 -1.166 -0.881 IL 89 89 3 89 3 1 8 65 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 30 - A - - - ML 90 89 3 92 3 1 8 63 87 -8.308 -0.016 -6.962 1.833 -3.068 -2.632 -2.682 D 91 89 3 92 3 0 2 61 86 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 7 64 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 31 - C - - - ML 93 92 3 95 3 1 8 62 86 -4.962 -0.059 -6.962 -2.583 1.790 -3.409 -1.833 D 94 92 3 95 3 0 1 60 85 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 6 63 87 -1.560 -0.716 -4.260 0.000 0.000 0.000 0.000 [ MATL 28 ] 33 - U - - - ML 96 95 3 98 3 1 7 61 85 -8.308 -0.016 -6.962 -2.140 -2.025 -2.899 1.763 D 97 95 3 98 3 0 0 59 84 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 5 62 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - U - - - ML 99 98 3 101 3 1 6 60 84 -8.308 -0.016 -6.962 -2.140 -2.025 -2.899 1.763 D 100 98 3 101 3 0 0 58 83 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 5 61 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 35 - U - - - ML 102 101 3 104 3 1 6 59 83 -8.308 -0.016 -6.962 -2.140 -2.025 -2.899 1.763 D 103 101 3 104 3 0 0 57 82 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 4 60 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 36 - C - - - ML 105 104 3 107 3 1 5 58 82 -8.308 -0.016 -6.962 -2.583 1.790 -3.409 -1.833 D 106 104 3 107 3 0 0 56 81 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 3 59 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 37 - G - - - ML 108 107 3 110 3 1 5 57 81 -8.308 -0.016 -6.962 -1.316 -2.919 1.709 -2.347 D 109 107 3 110 3 0 0 55 79 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 3 58 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 38 - U - - - ML 111 110 3 113 3 1 4 56 80 -8.308 -0.016 -6.962 -1.154 -1.474 -2.135 1.567 D 112 110 3 113 3 0 0 54 78 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 2 57 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 39 - U - - - ML 114 113 3 116 3 1 4 55 79 -8.308 -0.016 -6.962 -2.140 -2.025 -2.899 1.763 D 115 113 3 116 3 0 0 53 77 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 2 56 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 40 - C - - - ML 117 116 3 119 3 1 3 54 78 -8.308 -0.016 -6.962 -2.583 1.790 -3.409 -1.833 D 118 116 3 119 3 0 0 52 76 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 55 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 41 - U - - - ML 120 119 3 122 3 1 3 53 77 -8.308 -0.016 -6.962 -2.140 -2.025 -2.899 1.763 D 121 119 3 122 3 0 0 51 75 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 54 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - U - - - ML 123 122 3 125 3 1 2 52 76 -8.308 -0.016 -6.962 -1.145 -1.470 -2.129 1.565 D 124 122 3 125 3 0 0 50 74 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 53 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - C - - - ML 126 125 3 128 3 1 2 51 75 -8.308 -0.016 -6.962 -2.583 1.790 -3.409 -1.833 D 127 125 3 128 3 0 0 49 73 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 52 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - U - - - ML 129 128 3 131 3 1 2 50 74 -8.308 -0.016 -6.962 -2.140 -2.025 -2.899 1.763 D 130 128 3 131 3 0 0 48 72 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 51 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - G - - - ML 132 131 3 134 3 1 1 49 73 -8.308 -0.016 -6.962 -2.293 -3.610 1.843 -2.994 D 133 131 3 134 3 0 0 47 71 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 50 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 46 - A - - - ML 135 134 3 137 3 1 1 48 72 -8.308 -0.016 -6.962 1.833 -3.068 -2.632 -2.682 D 136 134 3 137 3 0 0 46 70 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 49 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 47 - G - - - ML 138 137 3 140 3 1 1 47 71 -8.308 -0.016 -6.962 -1.195 -2.450 1.614 -1.645 D 139 137 3 140 3 0 0 45 69 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 48 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 48 - U - - - ML 141 140 3 143 3 1 1 46 70 -8.308 -0.016 -6.962 -0.644 -0.522 -1.627 1.227 D 142 140 3 143 3 0 0 44 68 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 47 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - U - - - ML 144 143 3 146 3 1 1 45 69 -8.308 -0.016 -6.962 -0.932 -0.517 -1.438 1.268 D 145 143 3 146 3 0 0 43 67 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 46 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - U - - - ML 147 146 3 149 3 1 1 44 68 -8.308 -0.016 -6.962 -2.140 -2.025 -2.899 1.763 D 148 146 3 149 3 0 0 42 66 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 45 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 51 - G - - - ML 150 149 3 152 3 1 1 43 67 -8.308 -0.016 -6.962 -0.420 -2.292 1.458 -1.729 D 151 149 3 152 3 0 0 41 65 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 44 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 52 - C - - - ML 153 152 3 155 3 1 1 42 66 -4.454 -0.080 -6.962 -0.913 1.327 -2.049 -0.476 D 154 152 3 155 3 0 0 39 63 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 45 69 -1.081 -1.036 -4.664 0.000 0.000 0.000 0.000 [ MATL 48 ] 57 - U - - - ML 156 155 3 158 3 1 1 37 56 -8.308 -0.016 -6.962 -2.140 -2.025 -2.899 1.763 D 157 155 3 158 3 0 0 36 55 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 58 - G - - - ML 159 158 3 161 3 1 1 36 55 -8.308 -0.016 -6.962 -2.293 -3.610 1.843 -2.994 D 160 158 3 161 3 0 0 35 54 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 59 - A - - - ML 162 161 3 164 3 1 1 35 54 -8.308 -0.016 -6.962 1.833 -3.068 -2.632 -2.682 D 163 161 3 164 3 0 0 34 53 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 60 - A - - - ML 165 164 3 167 3 1 1 34 53 -8.308 -0.016 -6.962 1.833 -3.068 -2.632 -2.682 D 166 164 3 167 3 0 0 33 52 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 61 - G - - - ML 168 167 3 170 3 1 1 33 52 -8.308 -0.016 -6.962 -1.368 -1.961 1.622 -1.855 D 169 167 3 170 3 0 0 32 51 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 62 - C - - - ML 171 170 3 173 3 1 1 32 51 -8.308 -0.016 -6.962 -2.583 1.790 -3.409 -1.833 D 172 170 3 173 3 0 0 31 50 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 63 - C - - - ML 174 173 3 176 3 1 1 31 50 -4.328 -0.086 -6.962 -1.207 1.469 -2.297 -0.748 D 175 173 3 176 3 0 0 29 48 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 32 51 -1.627 -0.675 -4.328 0.000 0.000 0.000 0.000 [ MATL 55 ] 65 - A - - - ML 177 176 3 179 3 1 1 29 48 -8.308 -0.016 -6.962 1.833 -3.068 -2.632 -2.682 D 178 176 3 179 3 0 0 28 47 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 66 - u - - - ML 180 179 3 182 3 1 1 28 47 -8.308 -0.016 -6.962 -0.105 -0.194 0.062 0.204 D 181 179 3 182 3 0 0 27 46 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 67 - A - - - ML 183 182 3 185 3 1 1 27 46 -5.147 -0.053 -6.962 1.152 -0.914 -0.779 -0.590 D 184 182 3 185 3 0 0 26 44 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 29 48 -1.545 -0.726 -4.245 0.000 0.000 0.000 0.000 [ MATL 58 ] 69 - U - - - ML 186 185 3 188 3 1 1 26 45 -8.308 -0.016 -6.962 -1.590 -1.183 -2.335 1.599 D 187 185 3 188 3 0 0 25 44 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 70 - u - - - ML 189 188 3 191 3 1 1 25 43 -8.308 -0.016 -6.962 -0.307 -0.697 0.057 0.618 D 190 188 3 191 3 0 0 24 43 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 71 - u - - - ML 192 191 3 194 3 1 1 24 42 -8.308 -0.016 -6.962 -0.476 0.417 -0.987 0.527 D 193 191 3 194 3 0 0 23 41 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 72 - c - - - ML 195 194 3 197 3 1 1 22 41 -8.308 -0.016 -6.962 0.214 0.310 -1.231 0.232 D 196 194 3 197 3 0 0 22 40 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 73 - a - - - ML 198 197 3 200 3 1 1 21 40 -8.308 -0.016 -6.962 0.437 -0.980 -0.044 0.225 D 199 197 3 200 3 0 0 20 39 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 74 - u - - - ML 201 200 3 203 3 1 1 20 39 -5.082 -0.055 -6.962 -0.109 -0.806 0.090 0.523 D 202 200 3 203 3 0 0 19 37 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 22 40 -1.550 -0.723 -4.250 0.000 0.000 0.000 0.000 [ MATL 64 ] 76 - U - - - ML 204 203 3 206 3 1 1 19 37 -8.308 -0.016 -6.962 -0.262 -0.583 -1.128 1.029 D 205 203 3 206 3 0 0 18 37 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 77 - c - - - ML 207 206 3 209 3 1 1 17 36 -8.308 -0.016 -6.962 -0.153 0.525 -1.045 0.235 D 208 206 3 209 3 0 0 17 36 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 78 - C - - - ML 210 209 3 212 3 1 1 16 34 -8.308 -0.016 -6.962 -1.908 1.604 -2.761 -0.871 D 211 209 3 212 3 0 0 16 34 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 79 - U - - - ML 213 212 3 215 3 1 1 15 33 -8.308 -0.016 -6.962 -0.817 -1.203 -1.322 1.377 D 214 212 3 215 3 0 0 15 33 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 80 - G - - - ML 216 215 3 218 3 1 1 13 31 -8.308 -0.016 -6.962 -1.181 -2.821 1.681 -2.252 D 217 215 3 218 3 0 0 13 32 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 81 - A - - - ML 219 218 3 221 2 1 1 1 1 * 0.000 1.672 -2.362 -1.476 -1.948 D 220 218 3 221 2 0 0 0 0 * 0.000 IL 221 221 3 221 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 222 221 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD59 ACC RF00273 DESC Small nucleolar RNA SNORD59 LENG 73 MAXL 155 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 21:33:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00273/CM NSEQ 24 EFFN 3.231445 CKSUM 4037578250 STATS LOCAL MSV -8.4785 0.71874 STATS LOCAL VITERBI -9.4353 0.71874 STATS LOCAL FORWARD -3.9680 0.71874 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41212 1.55767 1.52468 1.11457 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 0.00000 * 1 1.82442 0.89036 1.91081 1.27218 1 c - - < 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 2 3.18866 0.28393 3.00200 1.85617 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 3 2.69962 1.94674 2.49744 0.34569 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.35885 4.15677 1.25223 1.46634 0.26236 1.09861 0.40547 4 2.40153 2.40158 2.90931 0.26875 4 U - - - 1.38629 1.38629 1.38629 1.38629 0.07706 2.94295 3.84178 0.67926 0.70723 0.10395 2.31535 5 2.86445 0.46233 2.64806 1.41725 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 6 1.10149 1.85169 1.54107 1.21571 7 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 7 1.27953 1.38103 1.45844 1.43585 8 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 8 2.97821 2.88110 3.50791 0.14724 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 9 3.08603 4.01096 0.09612 3.58107 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 10 0.10251 3.62545 3.31352 3.36948 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 11 2.61607 2.33632 3.13338 0.23996 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 12 2.42974 2.82535 0.23468 2.78339 13 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 13 0.22869 2.63324 2.80371 2.63121 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06428 4.15677 3.06622 1.46634 0.26236 1.09861 0.40547 14 1.58269 1.91438 1.36998 0.93386 15 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03285 4.12535 4.12535 1.46634 0.26236 1.60461 0.22435 15 2.42609 2.03089 2.94443 0.31777 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.34032 4.12535 1.30087 1.46634 0.26236 1.60461 0.22435 16 1.14831 1.79165 1.89714 1.00472 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.45698 1.06397 3.82945 0.61973 0.77239 0.10095 2.34316 17 0.58299 2.02278 2.14438 1.64846 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 18 1.40991 1.13474 1.51585 1.53847 23 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 19 1.07768 1.22099 2.11606 1.40989 24 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 20 1.10975 1.62554 2.20273 1.01321 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 21 1.11254 2.12796 2.31208 0.79155 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05504 4.15677 3.27283 1.46634 0.26236 1.09861 0.40547 22 1.28887 1.25518 2.07471 1.15899 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03255 4.13428 4.13428 1.46634 0.26236 1.48624 0.25647 23 2.93663 2.84624 3.46517 0.15359 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03255 4.13428 4.13428 1.46634 0.26236 1.48624 0.25647 24 2.31680 3.45480 0.19483 3.06090 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03255 4.13428 4.13428 1.46634 0.26236 0.60229 0.79309 25 0.10251 3.62545 3.31352 3.36948 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 26 3.31114 0.12775 3.87855 2.76827 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.06428 3.06622 4.15677 0.57460 0.82766 1.09861 0.40547 27 2.97821 2.88110 3.50791 0.14724 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 28 2.97821 2.88110 3.50791 0.14724 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 29 2.97821 2.88110 3.50791 0.14724 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 30 3.31114 0.12775 3.87855 2.76827 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 31 2.35554 3.50240 0.18584 3.10939 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 32 2.24095 2.47044 2.94174 0.27929 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 33 2.97821 2.88110 3.50791 0.14724 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 34 3.31114 0.12775 3.87855 2.76827 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 35 2.97821 2.88110 3.50791 0.14724 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 36 2.23407 2.46762 2.93750 0.28087 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 37 3.31114 0.12775 3.87855 2.76827 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 38 2.97821 2.88110 3.50791 0.14724 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 39 3.08603 4.01096 0.09612 3.58107 45 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 40 0.10251 3.62545 3.31352 3.36948 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 41 2.26889 3.15558 0.25058 2.58214 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 42 1.86430 1.76171 2.56227 0.51732 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 43 2.08314 1.75869 2.42045 0.48725 49 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 44 2.97821 2.88110 3.50791 0.14724 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 45 1.70109 3.04755 0.35626 2.66280 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 46 2.06434 0.44133 2.87781 1.75067 52 C - - _ 1.38629 1.38629 1.38629 1.38629 0.07983 2.79569 4.15677 1.28930 0.32222 1.09861 0.40547 47 2.97821 2.88110 3.50791 0.14724 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 48 3.08603 4.01096 0.09612 3.58107 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 49 0.10251 3.62545 3.31352 3.36948 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 50 0.10251 3.62545 3.31352 3.36948 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 51 2.41044 2.78800 0.24173 2.75812 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 52 3.31114 0.12775 3.87855 2.76827 62 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 53 2.28334 0.34316 3.06179 1.95383 63 C - - _ 1.38629 1.38629 1.38629 1.38629 0.08466 2.72544 4.15677 0.42429 1.06200 1.09861 0.40547 54 0.10251 3.62545 3.31352 3.36948 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 55 1.47050 1.51642 1.33242 1.24878 66 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 56 0.57107 2.03522 1.94391 1.82456 67 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05989 3.15892 4.15677 0.62320 0.76836 1.09861 0.40547 57 2.56739 2.24758 3.08462 0.25895 69 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 58 1.61735 1.88373 1.33456 0.95119 70 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 59 1.74150 1.07983 2.08640 1.01900 71 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 60 1.23854 1.15622 2.26980 1.23036 72 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 61 1.07950 2.08896 1.41101 1.22922 73 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 62 1.47276 1.96351 1.31165 1.01897 74 u - - _ 1.38629 1.38629 1.38629 1.38629 0.06136 3.12689 4.15677 0.60600 0.78863 1.09861 0.40547 63 1.58090 1.80430 2.18860 0.65866 76 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 64 1.50440 1.00393 2.13012 1.22899 77 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 65 2.80772 0.25291 3.40120 2.04185 78 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 66 1.99753 2.27096 2.33648 0.40880 79 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 67 2.25649 3.43083 0.20442 3.04062 80 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 68 0.21158 3.10201 2.44730 2.82665 81 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 69 1.83815 2.82074 0.34235 2.64185 82 G - - > 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 70 0.30457 2.89137 2.02787 2.58440 83 A - - - 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 71 0.44875 2.67361 1.70112 2.20640 84 A - - > 1.38629 1.38629 1.38629 1.38629 0.03182 4.15677 4.15677 1.46634 0.26236 1.09861 0.40547 72 2.33508 3.18886 0.20836 2.99448 85 G - - > 1.38629 1.38629 1.38629 1.38629 0.07998 4.15677 2.79351 1.46634 0.26236 1.09861 0.40547 73 1.41966 2.08145 0.73924 1.85806 86 g - - > 1.38629 1.38629 1.38629 1.38629 0.01682 4.09362 * 1.46634 0.26236 0.00000 * //