# STOCKHOLM 1.0
#=GF ID SNORA64
#=GF AC RF00264
#=GF DE Small nucleolar RNA SNORA64/SNORA10 family
#=GF AU Daub J; 0000-0001-6022-563X
#=GF GA 35.0
#=GF NC 34.9
#=GF TC 35.0
#=GF PI U64
#=GF SE PMID:10487763, Daub J
#=GF SS Published; PMID:10487763
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 20.00 -Z 2958934 CM SEQDB
#=GF CL CL00041
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Mus_musculus300780;
#=GF DR snoopy; Echinops_telfairi300096;
#=GF RN [1]
#=GF RM 10487763
#=GF RT Nucleolar localization signals of box H/ACA small nucleolar RNAs.
#=GF RA Narayanan A, Lukowiak A, Jady BE, Dragon F, Kiss T, Terns RM, Terns MP
#=GF RL EMBO J 1999;18:5120-5130.
#=GF RN [2]
#=GF RM 12007400
#=GF RT Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse
#=GF RT cellular functions.
#=GF RA Kiss T
#=GF RL Cell 2002;109:145-148.
#=GF CC This family belongs to the H/ACA class of small nucleolar RNAs (snoRNAs)
#=GF CC which act as guides in the the modification of uridines to pseudouridines
#=GF CC [2]. This family includes the human snoRNAs U64 and ACA10 and mouse
#=GF CC MBI-29.
#=GF WK Small_nucleolar_RNA_SNORA64/SNORA10_family
#=GF SQ 9

AJ609432.1/1-133         GGUCUCUCAGCUCCGCUUAACCACAC---GGGUCCAGUGUGUGCUUGGCGUGUUUUCAGGGAGGCAGAGAAAGGCUCUCCUAAUGCACGACAGACCCGCCCAGAA-UGGCCUCUCUGUUCCU-AGGAGUGCGACAAUU
AB007147.1/104-236       GGUCUCUCAGCUCCGCUUAACCACAC---GGGUCCAGUGUGUGCUUGGCGUGUUUUCAGGGAGGCAGAGAAAGGCUCUCCUAAUGNACGACAGACCCGCCCAGAA-UGGCCUCUCUGUUCCU-AGGAGUGCGACAAUU
AC016907.6/186868-187000 GGUCUCUCAGCUCUGCUUAACCACAC---GGGUCCAGUGUGUGCUUGGCGUGUUUUCAGGGAGGCAGAGAAAGGCUCUCCUAAUGCACGACAGACCCGCCCAGAA-UGGCCUCUCUGUUCCU-AGGAGUGUGACAAUU
AC026222.5/26043-25912   GGCCUCUCAGUUCCGCUUAAUCACAC---AGGUCCAGUGUGUGCUUGGUGUCUUUUCUGGGAGGCAGAGGAAGGCUCUCCUAAU-CACAACAGACCUGCCCAGAA-GGGCCUCUCUAUUUCU-AGGAGUAUGAUAGCU
AC008083.23/27997-28128  GGCCUCUCAGUGCCGCUUAAUCACAC---AGGUCCAGUGUGUGCUUGGUGUCUUUUCUGGGAGGCAGAGGAAGGCUCUCCUAAU-CACAACAGACCUGCCCAGAA-GGGCCUCUCUAUUUCU-AGGAGUAUGAUAGCU
AC011891.3/54747-54616   ACACUCUCAGCUAUGUAUAGUUACACCUGGCUUCACUUGUGUGACUUUUGCAA---UGGGAAGAGAGAGAGAAGGUCCCCUUGGU-ACCUCAGCUCGGCCUUAUGGUGGCC--UCUUUCCUUGAAGGGUGCAACAAAA
AC099331.2/140721-140854 AGACUCCCAGCUCUGCCCAGUUACACUAGGCUUCGCCUGUGUGGCUUCUGUAA---UGGGGAGGGAGAGAAAGGAUCUCCCCAGG-ACCUCAGAUUGGCUUUACUGUGGCAUCUCUUUCCUUGAGGGACACAAUAGGU
Y11158.1/1-134           ACUCUCUCGGCUCUGCAUAGUUGCACUUGGCUUCACCCGUGUGACUUUCGUAA---CGGGGAGAGAGAGAAAAGAUCUCCUCAGG-ACCUCGGAUGGGCCUUACUGUGGCCUCUCUUUCCUUGAGGGGUGCAACAGGC
BC063011.1/424-557       ACUCUCUCGGCUCUGCAUAGUUGCACUUGGCUUCACCCGUGUGACUUUCGUAA---CGGGGAGAGAGAGAAAAGAUCUCCUCAGG-ACCUCGGAUGGGCCUUACUGUGGCCUCUCUUUCCUUGAGGGGUGCAACAGGC
#=GC SS_cons             :<<<<<<<--<<<<<---<<<<<<<<..._________>>>>>>>>---------->>>>>->>>>>>>:::::::<<<<<-<<<------<<<-<<<<<_____._>>>>>->>>--->>>.>>>>>::::::::::
#=GC RF                  acuCUccCAGcuCcGCuUAgucaCAC...GguUCaagUGUGugacUuuuGUauUUUCgGggAGggAGagAAAgGaUCuCCuaaggcACaaCaGaucgGCCuaaaa.UGGCcgCuCuuUuccu.aGGaGUgcaAcAguu
//