# STOCKHOLM 1.0 #=GF ID SNORA68 #=GF AC RF00263 #=GF DE Small nucleolar RNA SNORA68 #=GF AU Moxon SJ; 0000-0003-4644-1816 #=GF GA 43.0 #=GF NC 42.7 #=GF TC 43.0 #=GF PI U68 #=GF SE Moxon SJ, INFERNAL #=GF SS Predicted; PFOLD #=GF TP Gene; snRNA; snoRNA; HACA-box; #=GF BM cmbuild -F CM SEED #=GF CB cmcalibrate --mpi CM #=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 22.50 -Z 2958934 CM SEQDB #=GF DR SO; 0000594; H_ACA_box_snoRNA; #=GF DR GO; 0006396; RNA processing; #=GF DR GO; 0005730; nucleolus; #=GF DR snoopy; Mus_musculus300869; #=GF DR snoopy; Loxodonta_africana300439; #=GF RN [1] #=GF RM 9106664 #=GF RT The family of box ACA small nucleolar RNAs is defined by an evolutionarily #=GF RT conserved secondary structure and ubiquitous sequence elements essential #=GF RT for RNA accumulation. #=GF RA Ganot P, Caizergues-Ferrer M, Kiss T #=GF RL Genes Dev 1997;11:941-956. #=GF RN [2] #=GF RM 12007400 #=GF RT Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse #=GF RT cellular functions. #=GF RA Kiss T #=GF RL Cell 2002;109:145-148. #=GF CC U68 is a member of the H/ACA class of small nucleolar RNAs (snoRNAs) which #=GF CC act as guides in the the modification of uridines to pseudouridines [2]. #=GF WK Small_nucleolar_RNA_SNORA68 #=GF SQ 26 Y11162.1/1-133 AUUGCAC-CU---AAACCCAA--GAAUCACUGUU-UCUUAU-AGCGGUGGUUUAAACAGAGGUGCAAACAGC-A-AGCG-GAUCUUGUCGCCUUUGGGGGGCUG-UG-GCCGUGCCCCUCAAAGUGAAUUUGGAGG-UUCCACAACU AC008474.9/113719-113587 UUCUCAC-CU---AAACCCAA--GAAUCACUGUU-UCUUAU-AGCGGUGGUUUAAACAGAGGUGCAAACAGC-A-AGUG-AAUCUCGUCGCCUUUGCGGGGCUG-UG-GCCAUGCCCCUCAAAGGAAAUUUGGAGG-CUCUACAGCC AANU01234533.1/2567-2699 CUCUCAC-CU---AAAGCCAA--GAAUCAUUGUU-UCUUGU-AGCGGUGGUUUAAACAGAGUUAUAAACAGC-A-AGUG-AAUCUCGUCGCCUUUGUGGGGCUG-UG-GCCAUGCCCCUCAAAGUGAAUUUAGAGG-CUCUACAGCC AAQQ01143976.1/1834-1702 CCUGCAC-CU---CAACCCAA--GAAUUGCUGUU-UCUCGU-AGCAGUGGUUUAAACAGAGGUGCUCACAGC-A-AGUG-GAUCUCGUCGCCUUUGAGAGGCUG-UG-GCUGUGCCCCUCAAAGUGAAUUUGGAGG-UUCUACACUC AANG01185971.1/1373-1505 GAAGCAC-CU---CAACCCAA--GAACUGCUGUU-UCUUGU-AAUAGCGGUUUAAACAGAGGUGCUGACAGC-A-AGUU-GAUCUCGUCGCCUUUGGGGGGCUG-UG-GCCGUGCUCCUCAAAGUGAAUUGAGAGG-UUCUACAGCC AAPY01778033.1/934-1066 CUCGCAC-CU---AAACCCAA--GGGCCGCGGUU-UGCCGU-AGCUGCGACUUAAACAGGGGUGCGGACAGC-A-AGCG-GACCUCGUCGCCUUUGGGGAGCUG-UG-GCCAUGCCCCUCAAAGUGAAUCUGGAGG-UCCCACACCU AAFC03006887.1/54868-55001 CAAGCAC-CU---AAACCCAA--GAACUGCUGUU-UCUUGU-AGCAGUGGUUUAAACAGAGGUGCUAACAGC-A-AAUGUUACCUCGUCGCCUUUGUGGGGCUG-CA-GCCGUGCCCCUCAAAGUGAAUUUGGAGG-UUCUACACAC AAKM01002076.1/56-186 GUUGCAC-CU---AAACCCAA-AGAAUCACUGUU-UCUUGA-AGUGGUGGUUUAAAC--AGGUGCAAACAGC-A-AGCG-AACCUCAUCACCUUUG-GUGGCUG-UG-GCAGUGCCCCUCAAAGUGAACUUAGAAG-CUCUACAUCC AANN01612551.1/710-579 UUAGCAC-CU---AAACCCAA--CGGCCACUAUU-UAUUAU-AAUAGUGGCUCAAACACAGGUGCUAACAGCAA-AGGG-UACCUCGUCGCCUUUGGAGGAC---UU-GCUGUGCCCUUCAAAGUGAACUUAGAGG-UUCUACACAC AAIY01069146.1/1428-1297 CUUGCAC-CC---AAACCCAA--GGACUGUGGCU-UCUCGU-AGCAGCAGUUUAAAGAGUGGUGCGCACAGA-A-AGUG-GGCCUUGUCGCCUUUGAGGGGCUG-UG--CAGUGCCCCUCAGAGUGAAUGUGAAGG-UUCGACAAGC AALT01055144.1/1338-1206 CAAGCAC-CU---AAACCCAA--GAGCUGUUACU-UCUUAU-AGUACCAGCUUAAAUAGAGGUACUGACAGG-A-AACA-CACCUCCUCACCUUUAGGGAGGCU-UG-CCUGUGGCCCUCAAAGUGAAUUUAGAGG-UUUUACAACC AC019302.14/153716-153846 CUGGCAC-CC----AACCCAA--GAACUGUCGCU-GCCUGU-AGCGGCUGUUUAAAUAGUGGUGCACACAGC-A-AAGG-GGCUUCGUCGCCUUUGGGGGGCUG-UG--CAGUGCCCCCCAGAGUGAAUCAGUAGG-CUCUACAGAA AAFR03031274.1/75999-76135 CUUGCAC-CC---AAACCCCAAAAGAUCUUUGUU-UUUCCUUAACAAUGAUCUUUUCUUGGGUGCAAACAUC-A-AAAG-AACCUUGUCGCCUUUCUGGAGCUGAUA-AAAGUGCCCCAGAAAGUGAAAUAGUGGG-UUCUACAUUC AB005653.1/1285-1413 UUGGCAC-CC----AACCCAA--GAACUGCCGCU-AC-UAU-AGCGGCUGUUUAAACAGUGGUGCACACAGC-A-AA-G-UGCUUCGUCGCCUUUGGGGGGCUG-UG--CAGUGCCCUCCAGAGUGAAUCAGGAGG-UUCUACAGUU AADA01170112.1/362-489 GUCGCAC-UU---AAACUUAA--GACUCUU--UU-UCUUGC-AGCAGUGGUUUAAACAGAGGAACAAACAGG-A-A----GAUCUUGUCGCCUUUGAGGGGCUG-UG-GUUGGGCCCCUCAAAGUGACUUUGGAGG-UUCUACGCCA AAPN01184835.1/1500-1362 ACUGCAC-CCCCAAGCCCCAA--AGAUCAUUGUUUCCUUCUUCACAAUGAUCUUAUCUGGGGUGCUGACAUC-A-AUUG-UACCUCGUCGCCUUUCAAGAGCUG-UUCGAAGUGCUCCUGAAAGUGAAAUGGAAGG-UUCAACAUAU AAKN02046884.1/23494-23626 CUUGCAC-CU---CAACCCAA--GAACCGCCACU-UCCCGU-AGUGACGGUUUAAACAGGGGUGCACAUAGU-A-AGUG-GAUCUCGUCGCCUUUGGAGGGCUG-UG-GCUGUGCCCACCAAAGUGAAUUUGGAGG-UUCCACACCC AAGV020559111.1/2197-2066 CCCGCGC-CC---AAACCCAA--GAGCCGCCGUU-UGCGGU-AACGGCGGCUCAAGCAGCGGCGCGGACAGC-A-CGCG-AGCCUCGUCGCCUUUGGGGGGCUG-UG--CCGUGCCCCCCGGAGUGAAUGUGGAGG-UUCGACAGGC AADN03001201.1/163886-163755 AAUGCAC-ACA-AAAACCCAA--AGAAUGUUGUU-CCUCGU-AAUGACGUUCUUGUCGUGUGUGCAGAUAUU-A-UAUG-UAUCUUGUCGCCUUUCCAGAGCUG-AG-GU---GCUCUUGAAAGUGAAACUUGAGG-UUCUACAUGA AAWZ02000196.1/23785-23656 ACUGCAU-AC---AAACCCAA--AGAGCAUUGUU-UAUAAA-UAAAAUGUUCUUGUCAUGUGUGCAGAUAUG-A-AAUG-UACCUUGUCGCCUUUCAAGAGCUG-AA-GU---GUUUUUGAAAGUGAAAUUGAAGG-UCCUACAAUU AAEX03012289.1/62549-62416 CCAGCAC-CU---CAACCCAA--GAACUGCUGUU-UCUCAU-AGCAGCGGUUUAAACAGAGGUGCUAACAGC-AAAGUG-GAUCUCGUCGCCUUUGGGGGGCUG-UG-GCUGUGCUCCUCAAAGUGAAUUUGGAGG-UUCUACACCC AAQR03004723.1/28297-28425 UUUGCAC-CU---AAACUCCA--AAAUUGCUGUU--AAUAU-AGCAGUGAUUUAAACAGAUGUGCAGACA-----AGUG-GAUCUCAUCACCUUUGGAGGGCUG-UG-ACUAUGCCCCUCAAAGUGAAUGUGGAG-GUUCUAUAUCC AAPE02055521.1/11137-11266 CAAGCAC-CU---AAACCCAA--GAACUGCUGUU-UGCUGU-AGCUGCAGUUGAAAC--AGGUGCUAACAGC-A-AGUG-GAUCUUGUCGCCUUUG-GGGGCUG-UG-ACUGUGCCCCUCAAAGUGAAUUGGAAGG-UUCUACACUC AAGU03050420.1/23208-23077 CUUGCAC-CC---AAACCCAA--GAACCGCAGUU-UCUCGU-AGCGGCGGUUUAAACAGUGGUGCACACAGC-A-AAUG-GACCUUGUCGCCUUUGGGGAGCUG-U--CCCAUGCCCCCCAGAGUGAAUAUGGAGG-UUCUACACCC AAGW02002827.1/10798-10927 UGCCCAUACU---AAACCCAA--GAAUCACAGUU---GUGU-AGCAGUGAUUUAAACACAGGUGUGCACAGC-A-AGUG-GAUCUCAUCGCCUUU--GGGGCUG-AG-GCUGUGCCACUGGAAGUGAAUCUGGAAG-UCUUACACCC FM165404.1/1-130 UGCACAC-AA---AAACCCAA--AGAAUGUUGUU-CCUCGU-AAUGACGUUCUUGUCGUGUGUGCAGAUAUU-A-UAUG-UAUCUUGUCGCCUUUCCAGAGCUG-AG-GU---GCUCUUGAAAGUGAAACUUGAGG-UUCUACAUGA #=GC SS_cons :<<<<<<.<<...--------..-<<<<<<<<<<.______.>>>>>>>>>>------->>>>>>>>:::::.:.:::<.<<<<<<-----<<<<<<<<<<<__.__._____>>>>>>>>>>>-------->>>>.>>>::::::: #=GC RF uccgCaC.cu...AAACCCAA..gaaccgcugcU.UcUugU.AgcagcgguuUAAaCAgagGuGcggACAgc.A.AguG.gacCUcGUCGCCUuUgggggGCUG.UG.gcuGUGCcccccAaAGUGAAuuUggAGg.ucCUACAucc //