# STOCKHOLM 1.0
#=GF ID sar
#=GF AC RF00262
#=GF DE sar RNA
#=GF AU Bateman A; 0000-0002-6982-4660
#=GF GA 43.0
#=GF NC 42.6
#=GF TC 43.0
#=GF SE Pubmed:9042942, INFERNAL
#=GF SS Predicted; RNAalifold; Daub J
#=GF TP Gene; antisense;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 23.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000644; antisense_RNA;
#=GF DR GO; 0003729; mRNA binding;
#=GF RN [1]
#=GF RM 9042942
#=GF RT Antisense RNA control of gene expression in bacteriophage P22. I.
#=GF RT Structures of sar RNA and its target, ant mRNA.
#=GF RA Schaefer KL, McClure WR
#=GF RL RNA 1997;3:141-156.
#=GF CC Sar RNA is an antisense RNA that is partly responsible for the negative
#=GF CC regulation of antirepressor synthesis during development of bacteriophage
#=GF CC P22 [1].
#=GF WK sar_RNA
#=GF SQ 4

AF527608.1/15090-15023 GUUGGUUUUUCUCCAAGGAUUUACUGACAACCGAAGCCCUGACUGUUACCGCGGUUGGGGCUUCAACU
X01916.1/599-532       GUUGGUUUUUCUCCAAGGAUUUACUGACAACCGAAGCCCUGACUGUUACCGCAGUUGGGGCUUCAACU
AY121861.1/1816-1749   GUUGGUUUUUCUCCAAGGAUUUACUGACAACCGAAGCCCUGACUGUUACCGCAGUUGGGGCUUCAACU
CP000711.1/6497-6564   UCGUUAAUUCCUAUGCGUGGUUUUACGAUACCGAAGCCCUGACUGUUCCCGCAGUUGGGGCUUCAACU
#=GC SS_cons           <<<<<<________________>>>>>>::::<<<<<<<<<<<<<<____>>>>>>>>>>>>>>::::
#=GC RF                guggguuUUuCUccAaGgAuUUacucacaACCGAAGCCCUGACuGUUaCCGCaGUUGGGGCUUCAACU
//
