INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-TAR ACC RF00250 DESC Trans-activation response element (TAR) STATES 187 NODES 39 CLEN 61 W 76 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 09:22:30 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00250/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 45 EFFN 2.584534 CKSUM 1818669329 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 45.90 NC 37.20 EFP7GF -10.7206 0.71935 ECMLC 0.67177 -5.13288 3.57702 1600000 417127 0.002877 ECMGC 0.48003 -15.34158 -2.63865 1600000 177953 0.002248 ECMLI 0.64556 -3.85970 4.58597 1600000 279931 0.004287 ECMGI 0.50733 -10.80106 0.20597 1600000 106471 0.003757 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 76 96 -7.092 -8.337 -0.069 -4.791 IL 1 1 2 1 4 1 5 78 97 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 7 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 61 - C - - MR 3 2 3 5 3 1 8 76 96 -8.571 -0.016 -6.888 -1.319 1.483 -2.285 -0.738 D 4 2 3 5 3 0 1 75 94 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 6 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 60 - A - - MR 6 5 3 8 5 1 8 75 95 -7.296 -0.034 -7.111 -7.324 -8.215 1.802 -2.838 -2.424 -2.428 D 7 5 3 8 5 0 1 74 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 4 76 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 59 G C - - MP 9 8 3 13 6 2 8 74 94 -9.206 -9.146 -0.020 -7.922 -8.202 -8.597 -3.248 -0.590 -3.318 1.102 -3.863 -3.936 0.433 -3.829 -3.433 3.085 -3.910 -0.157 0.179 -2.392 -1.439 -2.358 ML 10 8 3 13 6 1 3 73 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 3 73 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 4 74 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 4 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 58 G C - - MP 15 14 6 19 6 2 7 72 92 -9.206 -9.146 -0.020 -7.922 -8.202 -8.597 -3.851 -1.688 -3.816 0.807 -4.449 -4.216 0.043 -4.340 -3.927 3.360 -4.256 -0.395 -0.228 -2.231 -1.894 -2.824 ML 16 14 6 19 6 1 2 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 2 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 3 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 3 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 57 G C - - MP 21 20 6 25 6 2 6 70 90 -9.206 -9.146 -0.020 -7.922 -8.202 -8.597 -4.529 -3.014 -4.547 0.298 -5.129 -2.818 -0.505 -5.043 -4.338 3.581 -4.626 -0.496 -0.803 -4.128 -2.502 -3.540 ML 22 20 6 25 6 1 2 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 2 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 3 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 3 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 56 U A - - MP 27 26 6 31 4 2 4 68 88 -7.194 -7.401 -0.045 -5.815 -4.334 -4.337 -4.237 -0.674 -1.816 -4.821 1.071 -3.931 -4.249 -0.504 -4.656 -2.407 3.467 -4.491 -0.919 -3.062 ML 28 26 6 31 4 1 1 69 88 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 1 68 88 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 0 67 87 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 2 70 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 2 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 5 - C - - - ML 33 32 6 35 5 1 3 66 85 -7.296 -0.034 -7.111 -7.324 -8.215 -1.894 1.627 -2.734 -1.024 D 34 32 6 35 5 0 0 65 84 -4.959 -0.803 -4.221 -2.596 -2.508 IL 35 35 3 35 5 1 1 66 86 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 55 U A - - MP 36 35 3 40 6 2 4 65 84 -9.206 -9.146 -0.020 -7.922 -8.202 -8.597 -3.769 -3.815 -3.853 -0.359 -2.304 -4.619 0.845 -3.831 -2.845 -0.235 -4.379 -2.020 3.450 -4.025 -1.065 -2.773 ML 37 35 3 40 6 1 1 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 6 1 1 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 3 40 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 1 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 1 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 54 C G - - MP 42 41 6 46 6 2 4 63 82 -9.206 -9.146 -0.025 -6.989 -8.202 -8.597 -4.440 -4.443 -4.250 -0.692 -1.558 -4.748 3.523 -3.874 -4.290 -0.525 -4.611 -2.470 0.507 -4.564 -0.415 -3.158 ML 43 41 6 46 6 1 1 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 53 u g - - MP 48 47 6 52 6 2 4 61 80 -9.201 -9.140 -0.020 -7.917 -8.197 -8.592 -4.101 -4.131 -3.862 -0.459 -2.658 -4.311 1.739 -3.432 -3.907 -0.274 -4.226 -2.238 1.621 -4.188 2.810 -2.783 ML 49 47 6 52 6 1 1 59 79 -6.325 -6.671 -1.206 -1.080 -6.521 -4.051 0.266 -0.365 -0.307 0.278 MR 50 47 6 52 6 1 1 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 52 c g - - MP 54 53 6 58 6 2 4 59 78 -9.206 -9.146 -0.025 -7.020 -8.202 -8.597 -2.935 -2.991 -3.011 0.482 0.231 -3.771 2.710 -2.970 -3.027 0.584 -3.532 -1.195 1.404 -3.195 -0.001 -1.309 ML 55 53 6 58 6 1 1 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 51 u a - - MP 60 59 6 64 6 2 3 57 76 -9.201 -9.140 -0.020 -7.917 -8.197 -8.592 -3.335 -3.314 -3.359 0.295 -2.603 -4.077 1.744 -3.212 -3.366 0.496 -3.842 -1.387 2.798 -3.556 0.545 -1.579 ML 61 59 6 64 6 1 1 55 75 -6.322 -6.668 -1.210 -1.077 -6.518 -4.047 0.270 -0.365 -0.302 0.271 MR 62 59 6 64 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 50 a u - - MP 66 65 6 70 6 2 2 55 74 -9.206 -9.146 -0.033 -7.922 -8.202 -6.406 -1.950 -1.711 -1.886 1.586 -2.092 -2.944 1.419 -2.440 -2.195 1.495 -2.742 0.269 1.423 -2.237 -0.040 -0.551 ML 67 65 6 70 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 49 g c - - MP 72 71 6 76 6 2 3 53 72 -9.193 -9.132 -0.020 -7.909 -8.189 -8.584 -3.131 -1.702 -3.147 1.219 -3.572 -3.813 0.557 -3.614 -2.559 2.997 -2.736 0.181 0.313 -3.119 -1.265 -2.211 ML 73 71 6 76 6 1 1 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 49 69 -9.272 -7.970 -2.207 -4.449 -4.467 -0.542 IL 76 76 5 76 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 48 c g - - MP 78 77 6 82 6 2 2 51 70 -9.206 -9.146 -0.020 -7.922 -8.202 -8.597 -1.917 -2.013 -2.101 1.034 -1.976 -2.926 1.706 -2.365 -1.698 1.148 -2.048 0.194 1.512 -2.233 0.988 -1.293 ML 79 77 6 82 6 1 1 49 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 49 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 47 u a - - MP 84 83 6 88 6 2 2 49 68 -9.206 -9.146 -0.032 -6.329 -8.202 -8.597 -3.236 -3.263 -3.305 0.267 -1.708 -4.065 1.574 -3.235 -3.313 0.404 -3.817 -1.412 2.951 -3.486 0.075 -1.795 ML 85 83 6 88 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 47 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 46 a u - - MP 90 89 6 94 6 2 2 47 66 -9.194 -9.134 -0.020 -7.910 -8.190 -8.585 -3.270 -0.510 -3.365 2.969 -3.836 -4.494 0.157 -3.628 -3.343 1.504 -3.879 0.477 -0.060 -3.670 -1.632 -2.323 ML 91 89 6 94 6 1 1 46 66 -6.412 -6.758 -1.100 -1.166 -6.607 -4.137 0.280 -0.603 0.272 -0.120 MR 92 89 6 94 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 45 G C - - MP 96 95 6 100 4 2 2 45 64 -7.194 -7.401 -0.045 -5.815 -4.091 -2.772 -4.060 0.666 -4.698 -4.350 -0.108 -4.563 -4.084 3.432 -4.401 -0.219 -0.395 -2.245 -2.084 -3.042 ML 97 95 6 100 4 1 1 45 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 45 64 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 44 63 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 47 66 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - - - ML 102 101 6 104 5 1 1 42 62 -7.296 -0.034 -7.111 -7.324 -8.215 1.655 -2.253 -1.480 -1.820 D 103 101 6 104 5 0 0 41 60 -4.959 -0.803 -4.221 -2.596 -2.508 IL 104 104 3 104 5 1 1 43 62 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 44 C G - - MP 105 104 3 109 6 2 2 41 61 -9.206 -9.146 -0.020 -7.922 -8.202 -8.597 -4.231 -4.298 -4.237 -0.862 -2.091 -3.272 3.646 -4.227 -4.312 -0.758 -4.699 -2.540 -0.049 -4.480 -1.270 -3.318 ML 106 104 3 109 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 43 C G - - MP 111 110 6 115 6 2 2 39 58 -9.206 -9.146 -0.020 -7.922 -8.202 -8.597 -3.947 -4.007 -2.825 -0.544 -1.106 -4.658 3.535 -3.944 -4.028 -0.436 -4.449 -2.224 0.261 -4.198 -1.162 -3.028 ML 112 110 6 115 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 42 A U - - MP 117 116 6 121 6 2 2 37 56 -9.206 -9.146 -0.020 -7.922 -8.202 -8.597 -3.984 -3.309 -3.931 3.503 -4.321 -5.216 -0.248 -2.555 -4.042 0.577 -4.587 -0.620 -0.540 -4.411 -2.105 -2.952 ML 118 116 6 121 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 21 41 G C - - MP 123 122 6 127 6 2 2 35 54 -9.206 -9.146 -0.029 -6.555 -8.202 -8.597 -3.093 -0.960 -3.113 1.111 -3.539 -3.766 0.541 -3.595 -2.522 3.015 -3.714 -0.066 0.307 -2.099 -1.258 -2.194 ML 124 122 6 127 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 40 A U - - MP 129 128 6 133 4 2 2 33 52 -7.172 -7.379 -0.045 -5.793 -3.965 -2.904 -4.011 3.443 -4.809 -5.684 -0.502 -4.115 -3.875 0.915 -4.459 0.127 -0.761 -4.691 -2.413 -2.824 ML 130 128 6 133 4 1 1 34 53 -3.854 -4.037 -0.468 -2.766 0.311 -0.577 0.213 -0.104 MR 131 128 6 133 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 35 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - U - - - ML 135 134 6 137 3 1 1 31 50 -8.194 -0.099 -3.998 -1.921 -1.842 -2.673 1.723 D 136 134 6 137 3 0 0 30 49 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - C - - - ML 138 137 3 140 3 1 1 30 49 -8.114 -0.129 -3.612 -0.689 1.106 -1.694 -0.124 D 139 137 3 140 3 0 0 29 48 -6.838 -0.824 -1.230 IL 140 140 3 140 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - U - - - ML 141 140 3 143 5 1 1 29 47 -7.205 -0.036 -7.021 -7.233 -8.124 -0.150 -0.658 -1.294 1.041 D 142 140 3 143 5 0 0 27 46 -5.464 -0.516 -4.726 -3.101 -3.013 IL 143 143 3 143 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 26 39 G C - - MP 144 143 3 148 6 2 2 28 46 -9.206 -9.146 -0.020 -7.922 -8.202 -8.597 -4.598 -1.399 -4.640 0.320 -5.375 -4.645 -0.687 -5.081 -4.350 3.595 -4.670 -0.732 -0.974 -4.290 -2.696 -3.573 ML 145 143 3 148 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 27 38 A U - - MP 150 149 6 154 6 2 2 26 44 -9.206 -9.146 -0.020 -7.922 -8.202 -8.597 -4.073 -2.994 -4.101 3.502 -4.926 -5.839 -0.604 -4.187 -3.968 0.798 -4.555 -0.100 -0.876 -4.834 -2.521 -2.912 ML 151 149 6 154 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 37 G C - - MP 156 155 6 160 6 2 2 24 42 -9.206 -9.146 -0.020 -7.922 -8.202 -8.597 -4.172 -2.818 -4.148 0.604 -4.778 -4.385 -0.175 -4.645 -4.133 3.468 -4.446 -0.364 -0.466 -2.253 -2.157 -3.128 ML 157 155 6 160 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 29 36 C G - - MP 162 161 6 166 4 2 2 22 40 -7.194 -7.401 -0.045 -5.815 -4.479 -4.492 -4.439 -0.928 -2.969 -5.061 3.666 -4.344 -4.509 -0.771 -2.946 -2.619 0.039 -4.702 -1.469 -3.465 ML 163 161 6 166 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - C - - - ML 168 167 6 170 3 1 1 19 37 -8.194 -0.018 -6.848 -2.306 1.747 -3.137 -1.608 D 169 167 6 170 3 0 0 18 37 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 31 - U - - - ML 171 170 3 173 3 1 1 17 36 -8.194 -0.018 -6.848 -1.134 -0.470 -1.886 1.352 D 172 170 3 173 3 0 0 17 36 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - G - - - ML 174 173 3 176 3 1 1 16 35 -8.194 -0.018 -6.848 -0.085 -1.967 1.275 -1.391 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - G - - - ML 177 176 3 179 3 1 1 15 33 -8.194 -0.018 -6.848 -0.418 -2.177 1.434 -1.604 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - G - - - ML 180 179 3 182 3 1 1 13 31 -8.194 -0.018 -6.848 -1.299 -2.805 1.694 -2.222 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - A - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 1.625 -1.869 -1.843 -1.466 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-TAR ACC RF00250 DESC Trans-activation response element (TAR) LENG 61 MAXL 139 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 09:22:30 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00250/CM NSEQ 45 EFFN 4.194031 CKSUM 1818669329 STATS LOCAL MSV -8.3528 0.71935 STATS LOCAL VITERBI -8.6601 0.71935 STATS LOCAL FORWARD -3.8843 0.71935 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.51716 1.31269 1.28186 1.45222 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 0.00000 * 1 1.68670 2.57026 0.44409 2.33362 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 2 2.16305 2.97128 0.27070 2.64582 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 3 2.72030 3.20947 0.15244 3.34806 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 4 3.74027 2.37763 3.57664 0.15605 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 5 3.28145 0.15651 3.85602 2.45167 5 C - - - 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 6 3.55464 2.69805 3.28744 0.14304 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 7 3.50939 0.18729 3.32314 2.25534 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 8 3.35318 1.73766 3.20208 0.28979 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 9 2.42719 0.56632 2.24984 1.43259 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 10 2.58948 1.61035 2.38432 0.45733 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 11 1.36276 1.64470 1.37231 1.21249 11 u - - < 1.38629 1.38629 1.38629 1.38629 0.05443 4.23482 3.25740 1.46634 0.26236 1.09861 0.40547 12 1.75987 2.46147 0.44273 2.29917 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03013 4.21052 4.21052 1.46634 0.26236 0.56108 0.84535 13 1.79517 1.46791 1.41644 1.01911 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 14 2.60120 1.70034 2.41910 0.42436 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 15 0.39299 3.08631 1.50733 2.85089 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 16 2.39261 3.09095 0.22494 2.73979 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 17 0.16134 3.38120 2.63022 3.14822 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 18 3.77024 0.10878 3.63352 2.92609 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 19 3.19235 0.17299 3.21189 2.55752 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 20 0.12350 3.61023 2.73723 3.71380 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 21 1.76319 2.50552 0.44599 2.23791 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 22 0.20829 3.70534 2.02669 3.45267 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 23 3.30165 3.15451 3.83887 0.10647 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.09671 4.23482 2.55494 1.46634 0.26236 1.09861 0.40547 24 2.07863 0.48778 2.88894 1.58340 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.12430 4.16951 2.28847 1.46634 0.26236 0.31685 1.30358 25 1.55293 1.95478 2.48174 0.57416 25 U - - - 1.38629 1.38629 1.38629 1.38629 0.03201 4.15086 4.15086 1.46634 0.26236 0.26610 1.45400 26 2.44909 3.58708 0.15694 3.46751 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 27 0.17084 3.84503 2.22234 3.60074 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 28 2.47230 3.18191 0.20551 2.81551 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 29 3.87562 0.10546 3.51788 3.00201 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 30 3.69417 0.08846 4.23300 3.09477 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 31 2.54453 1.77998 3.07468 0.34723 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 32 1.51472 3.11923 0.39755 2.74927 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 33 1.80724 3.29171 0.29442 2.92356 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 34 2.60887 3.83690 0.13582 3.44762 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 35 0.18131 2.94062 3.03417 2.73526 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 36 3.13214 3.88186 0.09352 3.68700 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 37 3.26855 0.23386 2.99782 2.11553 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 38 3.73688 2.71104 3.60608 0.12494 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 39 3.58368 0.16191 3.38123 2.43382 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.04701 4.23482 3.45961 1.46634 0.26236 1.09861 0.40547 40 3.68640 2.59927 3.53093 0.13773 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.02991 4.21771 4.21771 1.46634 0.26236 0.65296 0.73502 41 2.50780 0.46444 2.31121 1.65587 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 42 3.91138 3.16251 3.68802 0.09141 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 43 2.37807 3.37190 0.18556 3.16286 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 44 2.97994 3.59327 0.11280 3.56267 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 45 3.20550 0.25812 2.92449 2.01542 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.05197 4.23482 3.31978 1.46634 0.26236 1.09861 0.40547 46 3.08431 1.70807 2.89693 0.33152 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03005 4.21290 4.21290 1.46634 0.26236 0.58834 0.81023 47 0.51046 2.59187 1.48619 2.31597 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 48 1.47254 1.82739 0.98278 1.44581 48 g - - > 1.38629 1.38629 1.38629 1.38629 0.05443 4.23482 3.25740 1.46634 0.26236 1.09861 0.40547 49 2.47576 0.54749 2.20587 1.48127 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.03013 4.21052 4.21052 1.46634 0.26236 0.56108 0.84535 50 1.52055 1.66014 1.39361 1.06968 50 u - - > 1.38629 1.38629 1.38629 1.38629 0.03906 4.23482 3.73720 1.46634 0.26236 1.09861 0.40547 51 0.64470 2.55943 1.22688 2.25734 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.02967 4.22543 4.22543 1.46634 0.26236 0.79568 0.60015 52 1.33545 2.42412 0.64448 2.09176 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03951 4.23482 3.71924 1.46634 0.26236 1.09861 0.40547 53 1.61980 3.36563 0.32281 3.13700 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.02969 4.22500 4.22500 1.46634 0.26236 0.78587 0.60830 54 2.44029 3.47819 0.16942 3.27430 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 55 0.14904 3.56002 2.60509 3.32055 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 56 0.16167 3.74238 2.34806 3.50557 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 57 3.56687 0.18029 3.29223 2.30700 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 58 3.08580 0.27459 2.79125 2.01683 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 59 2.66560 0.42569 2.38186 1.68879 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 60 0.07240 3.95744 3.61914 3.73291 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.02939 4.23482 4.23482 1.46634 0.26236 1.09861 0.40547 61 2.68788 0.23890 3.44078 2.18535 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.01480 4.22023 * 1.46634 0.26236 0.00000 * //