# STOCKHOLM 1.0
#=GF ID MIR160
#=GF AC RF00247
#=GF DE mir-160 microRNA precursor family
#=GF AU Daub J; 0000-0001-6022-563X
#=GF GA 48.0
#=GF NC 47.9
#=GF TC 48.0
#=GF PI mir-160;
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; PFOLD
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000032;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF DR GO; 0016442; RISC complex;
#=GF RN [1]
#=GF RM 12202040
#=GF RT Prediction of plant microRNA targets.
#=GF RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP
#=GF RL Cell 2002;110:513-520.
#=GF CC miR-160 has been predicted or experimentally confirmed in a range of plant
#=GF CC species including Arabidopsis and rice (MIPF:MIPF0000032). miR-160 is
#=GF CC predicted to bind complementary sites in the untranslated regions of auxin
#=GF CC response factor genes to regulate their expression [1].The hairpin
#=GF CC precursors (represented here) are predicted based on base pairing and
#=GF CC cross-species conservation -- their extents are not known. In this case
#=GF CC the mature sequence is excised from the 5' arm of the hairpin.
#=GF WK mir-160_microRNA_precursor_family
#=GF SQ 7

AL161547.2/49332-49418    UCGUGCCUGGCUCCCUGUAUGCCACAAGAAAACAUCGAUUUAGUUUC--------------------------------------------------AAAAUCGAUCACUAGUGGCGUACAGAGUAGUCAAGCAUGA
AC004697.3/97809-97725    GUAUGCCUGGCUCCCUGUAUGCCAUAUGCUGAGCCCAUCGAGUAUCGAUGA---------------------------------------------------CCUCCGUGGAUGGCGUAUG-AGGAGCCAUGCAUAU
AC084320.10/152194-152329 AUAUGCCUGGCUCCCUGUAUGCCACUCGCGUAGCUGCCAAACUCAGUUGAAACAACUGCCUUCUCCCGGCGAGAUUCAGGCAUUGUGUUCGUACGUUUGGCUCUACUGCGGAUGGCGUGCG-AGGAGCCAAGCAUGA
AP004591.3/100727-100819  AUGUGCCUGGCUCCCUGUAUGCCACUCAUCUAGAGCAACAAACUUCUGCGAGAG-------------------------------------------GUUGCCUAUGAUGGAUGGCGUGCA-CGGAGCCAAGCAUAU
AB022221.1/11161-11075    UUAUGCCUGGCUCCCUGUAUGCCACGAGUGGAUACCGAUUUUGGUUUU-------------------------------------------------AAAAUCGGCUGCCGGUGGCGUACA-AGGAGUCAAGCAUGA
AK101881.1/424-511        GUGUGCCUGGCUCCCUGUAUGCCACACAUGUAGACCAACCCAUGGUGUCUG----------------------------------------------GUUGCCUACUG--GGUGGCGUGCA-AGGAGCCAAGCAUGC
AK071620.1/251-338        GCGUGCCUGGCUCCCUGUAUGCCACUCAUGUAGCCCAAUCCAUGGUGUGUU------------------------------------------------UGGAUGCUGUGGGUGGCGUGCA-AGGAGCCAAGCAUGC
#=GC SS_cons              <<<<<<-<<<<<<<-<<<<<<<<<--<<<______________________..............................................__________>>>-->>>>>>>>>.->>>>>>>->>>>>>
#=GC RF                   gcaUGCCUGGCUCCCuGuAUGCCACacgcguAgacCaauuaauuuuuuuua..............................................aauauCuacugcgGaUGGCGUaCa.AGGAGCCAAGCAugc
//
