# STOCKHOLM 1.0
#=GF ID mir-135
#=GF AC RF00246
#=GF DE mir-135 microRNA precursor family
#=GF AU Daub J; 0000-0001-6022-563X
#=GF GA 59.2
#=GF NC 59.1
#=GF TC 59.2
#=GF SE Griffiths-Jones SR, INFERNAL
#=GF SS Predicted; PFOLD
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR MIR; MI0000161;
#=GF DR MIR; MI0000452;
#=GF DR MIR; MI0000453;
#=GF DR MIR; MI0000645;
#=GF DR MIR; MI0000646;
#=GF DR MIR; MI0000715;
#=GF DR MIPF; MIPF0000028;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0035195; gene silencing by miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF RN [1]
#=GF RM 12007417
#=GF RT Identification of tissue-specific microRNAs from mouse.
#=GF RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T
#=GF RL Curr Biol 2002;12:735-739.
#=GF RN [2]
#=GF RM 14691248
#=GF RT Identification of many microRNAs that copurify with polyribosomes in
#=GF RT mammalian neurons.
#=GF RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G
#=GF RL Proc Natl Acad Sci U S A 2004;101:360-365.
#=GF RN [3]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF CC miR-135 has been shown to be expressed in human (MIR:MI0000452,
#=GF CC MIR:MI0000453), mouse (MIR:MI0000161, MIR:MI0000646, MIR:MI0000715) and
#=GF CC rat (MIR:MI0000645) [1,2]. miR-135 has now been predicted or
#=GF CC experimentally confirmed in a wide range of vertebrate species
#=GF CC (MIPF:MIPF0000028). The hairpin precursors (represented here) are
#=GF CC predicted based on base pairing and cross-species conservation -- their
#=GF CC extents are not known. In this case the mature sequence is excised from
#=GF CC the 5' arm of the hairpin.
#=GF WK mir-135_microRNA_precursor_family
#=GF SQ 88

URS00005675D3_9606/3-88   GCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCU-----ACUGCUCAC-UCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGA
URS00005675D3_9519/3-88   GCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCU-----ACUGCUCAC-UCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGA
URS00005675D3_9509/3-88   GCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCU-----ACUGCUCAC-UCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGA
URS00005675D3_9544/3-88   GCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCU-----ACUGCUCAC-UCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGA
URS00005675D3_9600/3-88   GCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCU-----ACUGCUCAC-UCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGA
URS00001E81B6_9597/3-88   GCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCU-----ACUGCUCAC-UCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGA
URS000075AE36_9598/3-88   GCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCU-----ACUGCUCAC-UCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGA
URS000075A7B3_9823/3-88   GCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCU-----ACUGCUCAU-UCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGA
URS000069015A_9913/3-88   GCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCU-----ACUGCUCAC-UCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGG
URS000069015A_9925/3-88   GCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCU-----ACUGCUCAC-UCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGG
URS00007E453A_9615/3-87   GCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUUU-----ACUGCUCAC-UCAUAUAGGGAUUGGAGCCGUGGCGUACGGCGGGG-
URS000063A10C_10090/3-88  GCCUCACUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCU-----AUUGCUCGC-UCAUAUAGGGAUUGGAGCCGUGGCGUACGGUGAGGA
URS00007E4ED4_246437/1-60 --------------UAUGGCUUUUUAUUCCUAUGUGAUUCU-----ACUGCUCAC-UCAUAUAGGGAUUGGAGCCGUGGC------------
URS000075A098_9796/1-60   -------------CUAUGGCUUUUUAUUCCUAUGUGAUUCU-----ACUGCUCAC-UCAUAUAGGGAUUGGAGCCGUGG-------------
URS00007E470A_9258/1-60   --------------UAUGGCUUUUUAUUCCUAUGUGAUCCU-----GCUGCUCAC-UCAUAUAGGGAUUGGAGCCGUGCA------------
URS000075A9D5_9031/1-87   GCCUCACUGUCCUGUAUGGCUUUUUAUUCCUAUGUGAUUAU-----ACAUCCCGCUUCAUAUAGGGAUUGAAGCCGUGCAAGGCGCUGGGGU
URS000075A5D1_59729/1-73  ----UGCCGUCUUGUAUGGCUUUUUAUUCCUAUGUGAUUAU-----ACAUCCCACUUCAUAUAGGGAUUGAAGCCGUGCAGU----------
URS00007E44D6_28377/6-92  GCCCCAUUGUCUUCUAUGGCUUUUUAUUCCUAUGUGAUUAU-----AUCACUAAUUUCAUAUAGGGAUUGAAGCCAUGUAAUACGCUGGGGA
URS0000D561D8_8665/1-81   AUCCCAUUGUCUUCUAUGGCUUUUUAUUCCUAUGUGAUUAU-----AUUGCUAAUUUCAUAUAGGGAUUGAAGCCAUGCAAUACAU------
URS000075E92A_31033/2-83  UGCCCAGUGCACUGUAUGGCUUUUUAUUCCUAUCUGACUGU-----ACUGAUAGU-UCAUAUAGGGAUGGAAGCCAUGCACUGCGCUG----
URS0000A837BD_99883/1-83  -GCCCAGUGCGCUGUAUGGCUUUUUAUUCCUAUCUGACUGU-----ACUGAGAGU-UCAUAUAGGGAUGGAAGCCAUGCACCGCGCUGGG--
URS0000D525E9_8030/1-60   --------------UAUGGCUUUUUAUUCCUAUCUGACUGC-----GUUGAGGGU-UCAUAUAGGGAUGGAAGCCAUGCA------------
URS000075B52B_7955/1-82   --CUCUUUGCCCCGUAUGGCUUUUUAUUCCUAUCUGAGAAUU----GCUCAGGAC-UCAUAUAGGGAUGGAAGCCAUGCAGGGCUGGGG---
URS0000D536F3_7998/1-61   --------------UAUGGCUUUUUAUUCCUAUCUGAGAAUU----GCUCAGGAC-UCAUAUAGGGAUGGAAGCCAUGCA------------
URS00000A7BEB_9796/9-93   UCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS00000A7BEB_9913/9-93   UCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS00000A7BEB_9597/9-93   UCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS00000A7BEB_9509/9-93   UCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS00000A7BEB_9600/9-93   UCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS00000A7BEB_9593/9-93   UCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS00000A7BEB_9598/9-93   UCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS00000A7BEB_9544/9-93   UCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS00000A7BEB_9823/9-93   UCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS00000A7BEB_9606/9-93   UCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS000000FA46_9519/9-93   UCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGCACCAC-AUAAUGU
URS000075BBB8_10090/9-93  UCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUCGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS000075BBB8_10116/9-93  UCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUCGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS000075A0B0_9031/9-93   UCACUCUAGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS0000D53CDB_8665/14-98  UCACUCUAGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS000075A026_9258/15-99  UCACUCUAGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS00007E4D97_28377/6-90  UCACUCUAGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS000075DD01_59729/1-73  ----UCUAGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUA---------
URS000075A3D0_13616/9-93  UCACUCUAGUGUCUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS000075CE51_9305/17-101 UCACUCUAGUGUCUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS000075A7EA_8364/9-93   UCACUGUGGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAUGUCUCAUGUAGGGAUGGAAGCCAUGAAAUAC-AUUGUGA
URS00007E4487_9615/1-62   -------------UUAUGGCUUUUUAUUCCUAUGUGAUAGUA------AUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAA-----------
URS000075E63D_7955/2-87   CAGCUGUCGUGUCUUAUGGCUUUUUAUUCCUAUGUGAAGGUG------AACAAGGCUCAUGUAGGGAUACAAGCCACUAAACACGCAGUCAG
URS0000D4FC50_7998/1-61   --------------UAUGGCUUUUUAUUCCUAUGUGAAGGUG------AACAAGGCUCAUGUAGGGAUACAAGCCACUAAA-----------
URS000075C8C9_8090/2-86   UUGCUGUUGUGUCUUAUGGCUUUUUAUUCCUACGUGAUGGUA------GAUGGGU-UCAUGUAGGAGUAGAAGCCACUAAACACGCGGUGAG
URS0000D52624_8030/1-57   --------------UAUGGCUUUUUAUUCCUACGUGAGGGUA------GAUGUGU-UCAUGUAGGGAUAGAAGCCACU--------------
URS0000D51841_8030/1-57   --------------UAUGGCUUUUUAUUCCUACGUGAGGAUA------GAUGUGU-UCAUGUAGGGAUAGAAGCCACU--------------
URS0000D53CFE_7757/1-87   ---UCCCCGCGUUGUAUGGCUUUUUAUUCCUACGUGAUCGUAACGCACGCUGAGCCUCAUGUAGGGAGGAAAGCCAUGCAACGACGGGUG--
URS000075E52B_10116/2-88  GCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCU----GUUCCGAAC-UCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGG
URS000075CCA1_10090/2-88  GCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCU----GCUCCGAAC-UCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGG
URS000075B545_9796/1-87   GCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCU----GUUCUAAAC-UCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGG
URS000075CD95_9913/1-86   -CUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUACU----GUUCCAAAC-UCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGG
URS00007E4ADF_9925/1-87   GCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUACU----GUUCCAAAC-UCAUGUAGGGCUAAAAGCCAUGGGUUACAGUGAGGG
URS0000759E75_9606/2-88   ACUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCU----GUCCCAAAC-UCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGG
URS000075EBB4_9593/7-93   ACUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCU----GUCCCAAAC-UCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGG
URS0000759E75_9544/2-88   ACUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCU----GUCCCAAAC-UCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGG
URS000075E719_9598/2-88   ACUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCU----GUCCCAAAC-UCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGG
URS0000A880C8_9600/2-88   ACUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCU----GUCCCAAAC-UCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGG
URS000075DB99_13616/4-90  UCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCU----GUUCCCAAC-UCAUGUAGGGCUAAAAGCCAUGGGCUACAGGGAGGG
URS00007E5040_9615/1-87   GCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCU----GUUUCUAAU-UCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGG
URS000075ED18_9258/17-103 UCUCUGCUGUGGCCUAUGGCUUUUUAUUCCUAUGUGAUUGCU----GCUUUGAAC-UCAUGUAGGGCUGAAAGCCAUGGGCUACAGAGAGGG
URS000075B950_9031/2-88   CCUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCU----UUUCCUAAC-UCAUGUAGGGCGAAAAGCCAUGGGCUACUCAGGGGA
URS000075B008_8364/2-87   CCCCUGCUGAGGUAUAUGGCUUUUUAUUCCUAUGUGAUUGCU----UU-CCUAAU-UCACAUAGGGCAGAAAGCCAUGUGCUGCACAGGGGA
URS000075F0BA_59729/1-86  CCUCUGCUGUGGUUUAUGGCUUUUUAUUCCUAUGUGAUUGCU----UUCCCGAAC-UCAUGUAGGGCGAAAAGCCAUGGGCUACACAGAGG-
URS00007E3ED5_28377/5-91  CCUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCU----UUUCAUAAC-UCAUGUAGGGCUAAAAGCCAUGGGCUACACAGAGGA
URS00007E3E7A_246437/1-61 --------------UAUGGCUUUUCAUUCCUAUGUGAUUGCU----GUUCCAAAC-UCAUGUAGGGCUAAAAGCCAUGGG------------
URS0000D50D70_8665/4-88   CCUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUACU----UUUUAUAAU-UCAUGUAGGGCUAAAAGCCAUGGGUUACACAAAG--
URS000075C8E3_7955/1-80   ----UGCUGUGUUUUAUGGCUUUCUAUUCCUAUGUGAUUUUC----UUCUGCCGUGUCACAUAGGGUUCAAAGCCAUUGGGUACAGAG----
URS0000D50F3E_7962/6-93   UCACUGCUGUGUUUUAUGGCUUUCUAUUCCUAUGUGAUUUUC----UUCUGUCAUGUCACAUAGGGUUCAAAGCCAUUGGGUACAGAGUGGA
URS000075B5A5_31033/1-79  ----UGCUGUGUUUUAUGGCUUUCUAUUCCUAUGUGAUUUU-----CUCUAGCAUGUCACAUAGGGUCUAAAGCCAUUGGGUACAGAG----
URS000075B9BB_8090/11-98  UCACUGCUGUGUCUUAUGGCUUUCUAUUCCUAUGUGAUUUUU----CUCUGGCAUGUCACAUAGGGUCUAAAGCCAUUGGGUGCAGAGUGGG
URS000075B5A5_99883/1-79  ----UGCUGUGUUUUAUGGCUUUCUAUUCCUAUGUGAUUUU-----CUCUAGCAUGUCACAUAGGGUCUAAAGCCAUUGGGUACAGAG----
URS0000D5241B_7998/1-62   --------------UAUGGCUUUCUAUUCCUAUGUGAUUUUC----UUCUGCCGUGUCACAUAGGGUUCAAAGCCAUUGG------------
URS0000D530D6_8030/1-58   --------------UAUGGCUUUCUAUUCCUAUGUGAUUUU-----UUCUAC--UGUCACAUAGGGUCCAAAGCCAUUG-------------
URS0000D4FBA0_8030/1-58   --------------UAUGGCUUUCUAUUCCUAUGUGAUUUU-----CUCUAC--UGUCACGUAGGGUCCAAAGCCAUUG-------------
URS0000D541B0_8030/1-61   --------------UAUGGCUUUCUAUUCCUAUGUGAUUUCU----CUCUGGUAUGUCAUGUAGGGUUUAAAGCCAUUG-------------
URS000075C539_8090/8-92   CCACACAUGCAUCUUAUGGCUUUCUAUUCCUAUGUGAGUUC-------UAAACACAUCAUGUAGGGUUUAAAGCCAUCGGAUACACAGUGGA
URS000075A1DD_7955/22-109 ACACUACUGUGCUUUAUGGCUUUCUAUUCCUAUGUGAUUUUG----AUAUGAUGUAUCAUGUAGGGUUCAAAGCCAUUAGGUACAGAGUGGC
URS0000D55CDB_7998/1-62   --------------UAUGGCUUUCUAUUCCUAUGUGAUUUUG----AUAUGAUGUAUCAUGUAGGGUUCAAAGCCAUUAG------------
URS0000A84A65_7757/1-86   UUGUAUCUGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUUGCU-----UCUGUAACCUCGCGUAGGGGUGAAAGCCAUGGAACACGGUGCAA-
URS0000D4F161_7739/1-77   --------GUGUUCUAUGGCUUU--CAUCCUAUGUGAAUGUUA---UCGCACAUGUUCACAUUGG-UG-GAAGUCAAAGAAGACGUGUGUGG
URS0000D4F161_7741/1-77   --------GUGUUCUAUGGCUUU--CAUCCUAUGUGAAUGUUA---UCGCACAUGUUCACAUUGG-UG-GAAGUCAAAGAAGACGUGUGUGG
URS0000D5004B_7739/1-72   ------CCGUGUCCAAUGGCUUU--CAUCCUUUGUGAAUGUCU---GAGCACA-GUUCACACU-GAUG-GGGGUUAUUGGACAAGA------
URS0000D54582_7741/1-72   ------CCGUGUCCAAUGGCUUU--CAUCCUUUGUGAAUGUCU---GAGCACA-GUUCACAUC-GAUG-GGGGUUAUUGGUUAAGG------
#=GC SS_cons              :<<<<<<<<<<<<<<<<<<<<<<--<<<<<<<<<<<<_____....__________>>>>>>>>>>>>->>>>>>>>>>>>>>>>>>>>>>:
#=GC RF                   uCccccccGugccccAUGGCUuuUUauUCCUAugUGAUugUu....auuuaaaauuUCAuaUAGGGauuaaAGCCAUggggcaCggggggGa
//
