# STOCKHOLM 1.0
#=GF ID mir-9
#=GF AC RF00237
#=GF DE mir-9/mir-79 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 58.6
#=GF NC 58.5
#=GF TC 58.6
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000014;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF DR GO; 0016442; RISC complex;
#=GF RN [1]
#=GF RM 11679670
#=GF RT Identification of novel genes coding for small expressed RNAs.
#=GF RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T
#=GF RL Science 2001;294:853-858.
#=GF RN [2]
#=GF RM 12007417
#=GF RT Identification of tissue-specific microRNAs from mouse.
#=GF RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T
#=GF RL Curr Biol 2002;12:735-739.
#=GF RN [3]
#=GF RM 11679671
#=GF RT An abundant class of tiny RNAs with probable regulatory roles in
#=GF RT Caenorhabditis elegans.
#=GF RA Lau NC, Lim LP, Weinstein EG, Bartel DP
#=GF RL Science 2001;294:858-862.
#=GF RN [4]
#=GF RM 12812784
#=GF RT Temporal regulation of microRNA expression in Drosophila melanogaster
#=GF RT mediated by hormonal signals and broad-Complex gene activity.
#=GF RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V
#=GF RL Dev Biol 2003;259:9-18.
#=GF RN [5]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF CC miR-9 has been identified in Drosophila (MIR:MI0000129) [1], mouse
#=GF CC (MIR:MI0000720) and human (MIR:MI0000466) [2], and the related miR-79 in
#=GF CC C. elegans (MIR:MI0000050) [3] and worm (MIR:MI0000374) [4]. The mature
#=GF CC ~21nt miRNAs are processed from hairpin precursor sequences represented
#=GF CC here. miR-9 is processed from the 5' arm of its precursor, and miR-79 from
#=GF CC the 3' arm. The bounds of the precursors are predicted based on
#=GF CC conservation and base pairing and are not generally known.
#=GF WK Mir-9/mir-79_microRNA_precursor_family
#=GF SQ 214

URS0000D565C6_135651/1-67  ----------CUUUGGUGAUUC-AGUUUUAAUGAUUGACGAUUCA------ACGUUUUCUUCAUAAAGCUAGGUUACCAAAGCU--------
URS0000D5080F_135651/1-67  ----------CUUUGGUGAUUC-AGUUUUAAUGAUUGACGAUUUA------CCGUUUUCUUCAUAAAGCUAGGUUACCAAAGCU--------
URS0000D50BA4_31234/16-100 AGUUUCCGAUCUUUGGUGAUUC-AGCUUAAAUGAUAGACUCAAUA------UGUUAGACUUCAUAAAGCUAGGUUACCAAAGCUCGGCGGCC
URS0000240AA6_6239/9-90    AUUCUCCGAUCUUUGGUGAUUC-AGCUUCAAUGAUUGGCUACA---------GGUUUCUUUCAUAAAGCUAGGUUACCAAAGCUCGGCGUCU
URS000078B428_6238/6-86    AUUCUCCGAUCUUUGGUGAUUC-AGCUUAAAUGAUAGAAUUCA----------GACGUCUUCAUAAAGCUAGGUUACCAAAGCUCGGCGUUC
URS000075E972_9031/7-82    GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUUU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS000075C6EB_59729/2-73   GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUUU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAA----
URS00007E3AAC_28377/7-82   GAGUUGUUGUCUUUGGUUAUCU-AGCU-GUAUGAGUGUGU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS0000D54F8F_29078/2-77   GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS00003FA6CD_9823/7-82    GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS00003FA6CD_9593/7-82    GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS00003FA6CD_9519/7-82    GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS00003FA6CD_9913/7-82    GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS00003FA6CD_9544/7-82    GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS00003FA6CD_9509/7-82    GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS00003FA6CD_9545/7-82    GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS00003FA6CD_9598/7-82    GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS00003FA6CD_10116/7-82   GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS00003FA6CD_9606/7-82    GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS000075CA7B_10029/1-76   GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS000075ED23_9796/1-76    GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS000075CBB1_9258/1-68    --GUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAA------
URS000075DD77_8364/7-81    G-GUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UUUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS000075E48B_9305/22-97   GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS0000759E1C_13616/7-82   GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS0000759E1C_9600/7-82    GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUC
URS000075D55C_10090/1-72   --GUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAC--
URS00007E4B0C_246437/1-59  ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGU--------
URS00007E3810_9615/1-60    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGUAU------------UGG--UCUUCAUAAAGCUAGAUAACCGAAAGUA-------
URS000075C54E_9606/7-84    UGGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGGUG------------UGGAGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAA
URS0000D56BEF_29078/2-79   UGGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGGUG------------UGGAGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAA
URS000075C54E_10090/7-84   UGGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGGUG------------UGGAGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAA
URS000075C54E_10116/7-84   UGGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGGUG------------UGGAGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAA
URS000075C54E_9823/7-84    UGGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGGUG------------UGGAGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAA
URS000075C54E_9544/7-84    UGGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGGUG------------UGGAGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAA
URS000075C54E_9600/7-84    UGGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGGUG------------UGGAGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAA
URS000075EF44_9598/7-84    UGGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGGUG------------UGGAGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAA
URS000075E2ED_9796/2-79    UGGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGGUG------------UGGAGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAA
URS000075D422_8364/6-83    UGGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUUG------------UCAAUCCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAA
URS0000759D64_7955/6-83    UGGCUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUUA------------UUCAUUCUUCAUAAAGCUAGAUAACCGAAAGUAACAAGAA
URS0000A884B5_7962/9-86    UGGCUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUUA------------UUCAUUCUUCAUAAAGCUAGAUAACCGAAAGUAACAAGAA
URS0000759FBF_31033/6-83   UGUCUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGACG------------UACAAUCUUCAUAAAGCUAGAUAACCGAAAGUAACAAGAA
URS0000A83C73_99883/10-87  UGUCUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGACG------------UACAAUCUUCAUAAAGCUAGAUAACCGAAAGUAACAAGAA
URS000075C02F_8090/13-90   UGUCUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGCCG------------UAUUUUCUUCAUAAAGCUAGAUAACCGAAAGUAACAAGAA
URS000075BFA8_8090/17-94   UGAUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGAUG------------UACAUUCUUCAUAAAGCUAGAUAACCGAAAGUAACAAGAA
URS0000D4F4BF_8030/1-61    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGAUG------------UACAUUCUUCAUAAAGCUAGAUAACCGAAAGU--------
URS0000D55EB2_8030/1-62    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGGUG------------UACAUUCUUCAUAAAGCUAGAUAACCGAAAGUA-------
URS00007E4EBC_246437/1-61  ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGGUG------------UGGAGUCUUCAUAAAGCUAGAUAACCGAAAGU--------
URS00007E4576_9615/1-62    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGGUG------------UGGAGUCUUCAUAAAGCUAGAUAACCGAAAGUA-------
URS00007E457F_13616/1-62   ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGGUG------------UCGAGUCUUCAUAAAGCUAGAUAACCGAAAGUA-------
URS0000D4F078_7998/1-62    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGUUA------------UUCAUUCUUCAUAAAGCUAGAUAACCGAAAGUA-------
URS000075D9C6_7955/7-82    GAGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUAUUU------------UGCA--CUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUG
URS000075CCC9_31033/1-72   --GUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUUC------------UGC--UCGUCAUAAAGCUAGAUAACCGAAAGUAAAAAC--
URS000075E607_8090/15-90   GGGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUUC------------UGC--UCGUCAUAAAGCUAGAUAACCGAAAGUAAAAACUA
URS000075CCC9_99883/1-72   --GUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUUC------------UGC--UCGUCAUAAAGCUAGAUAACCGAAAGUAAAAAC--
URS000075C9DD_7955/33-108  GUGUUGUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUG-------------CU-GGCCGUCAUAAAGCUAGAUAACCGAAAGUAAGAGCCG
URS0000D4F05A_8030/1-60    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGUG-------------AU-GGCCGUCAUAAAGCUAGAUAACCGAAAGUA-------
URS0000A80084_7757/7-83    UAGGUGGUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUGU------------CU-GGCCGUCAUAAAGCUAGAUAACCGAAAGUACCAACGA
URS0000D53E70_7998/1-60    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGUG-------------CU-GGCCGUCAUAAAGCUAGAUAACCGAAAGUA-------
URS0000D54ACA_8030/1-62    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGUUA------------CUCGGCCGUCAUAAAGCUAGCUAACCGAAAGUA-------
URS000075E81E_7955/6-83    UAGUUGCUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUUU------------AUCUGCCUUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGU
URS0000D5634B_7998/1-62    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGUUU------------AUCUGCCUUCAUAAAGCUAGAUAACCGAAAGUA-------
URS0000D53703_29078/2-79   CCGUUUCUCUCUUUGGUUAUCU-AGCU-GUAUGAGUGCCA------------CAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGA
URS000075D147_10090/7-84   CCGUUUCUCUCUUUGGUUAUCU-AGCU-GUAUGAGUGCCA------------CAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGA
URS000075D147_9913/7-84    CCGUUUCUCUCUUUGGUUAUCU-AGCU-GUAUGAGUGCCA------------CAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGA
URS000075D147_9600/7-84    CCGUUUCUCUCUUUGGUUAUCU-AGCU-GUAUGAGUGCCA------------CAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGA
URS00005D97FE_9606/7-84    CCGUUUCUCUCUUUGGUUAUCU-AGCU-GUAUGAGUGCCA------------CAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGA
URS000075C671_10116/7-84   CCGUUUCUCUCUUUGGUUAUCU-AGCU-GUAUGAGUGCCA------------CAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGA
URS00007E5044_9823/2-79    CCGUUUCUCUCUUUGGUUAUCU-AGCU-GUAUGAGUGCCA------------CAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGA
URS00007E373F_9925/1-71    -------UCUCUUUGGUUAUCU-AGCU-GUAUGAGUGCCA------------CAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGA
URS00007E4073_9615/1-61    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGCCA------------CAGAGCCGUCAUAAAGCUAGAUAACCGAAAGU--------
URS0000D53E54_7757/6-83    CGGCCCCUGUCUUUGGUUAUCU-AGCU-GUAUGAGUGUCA------------GAAUCCCGCCAUAAAGCUACUUAACCAAAAGCAGGGAUCC
URS00007E4073_246437/1-61  ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGCCA------------CAGAGCCGUCAUAAAGCUAGAUAACCGAAAGU--------
URS0000D4F09C_28377/7-82   CGGCUCUUCUCUUUGGUUAUCU-AGCU-GUAUGAGUGCGC-------------CUGG-UUUCAUAAAGCUAGAGAACCGAACGUACGAACCG
URS00007E44C4_13616/1-59   ---------UCUUUGGUUUCCU-AGCU-GUGUGAGUGUCU--------------CUG-AAUCAUAAAGCUGGAGAACCGAAUGUG-------
URS000075D2F4_7955/10-85   UGGUUUCUCUCUUUGGUUAUCU-AGCU-GUAUGAGU-UAU------------AACAC-UGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUAA
URS0000D54394_7998/1-59    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGU-UAU------------AACAC-UGUCAUAAAGCUAGAUAACCGAAAGU--------
URS000075E9EC_8364/1-74    --GUUUCUGUCUUUGGUUACCU-AGCU-GUAUGAGU-AUA------------ACUAA-UGUCAUAAAGCUAGACAACCGAACGUAUAAACCA
URS000075DF82_31033/7-82   GUGUUUCUGUCUUUGGUUAUCU-AGCU-GUAUGAGUGUUA------------AAUACCUGUCAUAAAGCUAGAUAACCGAAAGUAGAAAU--
URS000075DF82_99883/7-82   GUGUUUCUGUCUUUGGUUAUCU-AGCU-GUAUGAGUGUUA------------AAUACCUGUCAUAAAGCUAGAUAACCGAAAGUAGAAAU--
URS000075E9AE_8090/13-90   UCGUUUUUGUCUUUGGUUAUCU-AGCU-GUAUGAGUGUUA------------AAUACCUGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGA
URS0000D54648_8030/1-61    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGUUA------------AAUACCUGUCAUAAAGCUAGAUAACCGAAAGU--------
URS000075B26E_8364/1-76    --GUUUCUAUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAA------------AUAAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGGAAUCA
URS000075C546_8090/11-88   CUGUUCCUGUCUUUGGUUAUCU-AGCU-GUAUGAGUGUGA------------UUUACCCAUCAUAAAGCUAGAUAACCGAAAGUAGGAAUGA
URS000075E729_13616/7-84   CCGUUUCUCUCUUUGGUUAUCU-AGCU-GUAUGAGUGUUA------------UUGAGCUAUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGA
URS00007E4C61_28377/6-83   CCGUUUCUGUCUUUGGUUAUCU-AGCU-GUAUGAGUGUAA------------UCGACCCAUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGA
URS000075D006_59729/2-73   AUGUUUCUGUCUUUGGUUAUCU-AGCU-GUAUGAGUGUUG------------UGGAGCCAUCAUAAAGCUAGAUAACCGAAAGUAG------
URS0000759AE1_31033/5-80   UAGUUUUUAUCUUUGGUUAUCU-AGCU-GUAUGAGU-UUA------------UGUAAU-AUCAUAAAGCUAGAGAACCGAAUGUAUAAACUA
URS0000A81F08_99883/5-80   UAGUUUUUAUCUUUGGUUAUCU-AGCU-GUAUGAGU-UUA------------UGUAAU-AUCAUAAAGCUAGAGAACCGAAUGUACAAACUA
URS000075CC1F_8090/17-92   UAGUUUUUAUCUUUGGUUAUCU-AGCU-GUAUGAGU-UGG------------UGUAAU-AUCAUAAAGCUAGAGAACCGAAUGUAGAAACUG
URS000075E8FB_7955/6-81    UAGUUUUUCUCUUUGGUUAUCU-AGCU-GUAUGAGU-UUA------------UGUGAU-AUCAUAAAGCUAGAGAACCGAAUGUAUAAACUA
URS0000D5472D_8030/1-61    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGU-UUA------------UGUGAU-AUCAUAAAGCUAGAGAACCGAAUGUAU------
URS000075B8DA_9258/21-96   UGGCUUUGGUCUUUGGUUAUCU-AGCU-GUAUGAGU-GUA------------UGUGAU-GUCAUAAAGCUAGAGAACCGAAUGUAAAAACCA
URS0000D54260_8030/1-60    ---------UCUUUGGUUAUCU-AGCU-GAAUGAGU-UUA------------UGUGAU-AUCAUAAAGCUAGAGAACCGAAUGUA-------
URS000075E8AF_9031/7-82    UGGUUUUUCUCUUUGGUUAUCU-AGCU-GUAUGAGU-GUA------------UGUGAU-AUCAUAAAGCUAGAGAACCGAAUGUAAAAACCC
URS0000D51E9C_7998/1-60    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGU-UUA------------UGUGAU-AUCAUAAAGCUAGAGAACCGAAUGUA-------
URS000075A523_7955/5-79    UAGUUUUUCUCUUUGGUUAUCU-AGCU-GUAUGAGU--UA------------UGAAAU-AUCAUAAAGCUAGAGAACCGAAAGUAGAAACUA
URS0000759BE7_8090/15-87   UAGUUUGUGUCUUUGGUUAUCU-AGCU-GUAUGAGU-UU---------------UAAU-UUCAUAAAGCUAGAGAACCGAAAGUACGAACUG
URS0000A7E248_8255/1-57    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGU-UU---------------UAAU-UUCAUAAAGCUAGAGAACCGAAAGUA-------
URS00007AA973_54126/20-96  AUUAUCGUCUCUUUGGUUAUCU-AGCU-GUAUGAUU-UGA------------AAUGUAAAUCAUAAAGCUGGAAAACUGAAGGAACGAUGUG
URS0000D547C8_7998/1-58    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGU-UAU------------GAAAU--AUCAUAAAGCUAGAGAACCGAAAGU--------
URS0000D54686_8030/1-57    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGU-UA---------------UAAU-UUCAUAAAGCUAGAGAACCGAAAGUA-------
URS0000D50A23_6289/15-88   CUAUUGAUCUCUUUGGUUAUCU-AGCU-GUAUGACU-UUA------------U--GGAC-UCAUAAGGCUGGACGACUAAAGGAAUCAAUUC
URS0000D51015_8030/1-62    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGUUA------------CUCGGCCGUCAUAAAGCUAGCUAACCGAAUGUA-------
URS0000D4F50E_7998/1-60    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUAUUU------------UGCA--CUUCAUAAAGCUAGAUAACCGAAAGUA-------
URS0000D4F8F7_7739/1-73    ---GUGUUGUCUUUGGUUAUCU-AGCU-GUAUGAGAGUCU------------UUUG-UCACCAUAAAGCUAGGUAACCAAA-ACAACAACCA
URS0000D50475_7739/1-72    ----UGUUGUCUUUGGUUAUCU-AGCU-GUAUGAGAGUCU------------UUUG-UCACCAUAAAGCUAGGUAACCAAA-ACAACAACCA
URS0000D4F425_7741/1-73    ---GUGCUGUCUUUGGUUAUCU-AGCU-GUAUGAGAGUCU------------UCUG-UCACCAUAAAGCUAGGUAACCAAA-ACAACAACCA
URS000075E519_7091/9-84    GGUUAAUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUAU--------------UACUGACGUCAUAAAGCUAGGUUACCGGAGUUAAGUGCCG
URS0000D520D1_51655/11-86  GGUUAAUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUAA--------------UAUAGACAUCAUAAAGCUAGGUUACCGGAGUUAAGUGCCG
URS0000D50220_7130/21-96   GGUUAAUUAUCUUUGGUUAUCU-AGCU-GUAUGAGUAU--------------UUUAGACAUCAUAAAGCUAGGUUACCGGAGUUAAGUACCA
URS0000D5132D_34740/23-97  GGCUAAUUAUCUUUGGUUUUCU-AGCU-GUAUGAGUAU--------------UG-AGACAUCAUAAAGCUAGGUUACCGGAGUUAAGGGCCG
URS0000D56277_6253/1-76    --GCAAUU-UCUUUGGUUAUCU-AGCU-GUAUGAGUACCGCG----------UUUAGUCGUCAUAAAGCUGGACGACCGAAGU-AAUGGCCG
URS000075B41D_10116/21-98  UCAUUUCUACUUUCGGUUAUCU-AGCU-UUAUGACGGCUC------------UGUGGCACUCAUACAGCUAGAUAACCAAAGAGAGAAACGG
URS0000D4FA23_8665/2-77    CGGUUUAUACAUUCGGUUCUCU-AGCU-UUAUGAUA--UC------------AGAUACACUCAUACAGCUAGAUAACCAAAGAGAAAAACCG
URS0000D52CEF_7757/6-83    GGAUCCCUGCUUUUGGUUAAGU-AGCU-UUAUGGCGGGAU------------UCUGACACUCAUACAGCUAGAUAACCAAAGACAGGGGCCG
URS0000D4FE58_8665/8-85    UCAUUUCUACUUUCGGUUAUCU-AGCU-UUAUGAUGGCUU------------GAUAACACUCAUACAGCUAGAUAACCAAAGACAGAAACGG
URS000075C5C3_10116/16-93  UUAUUUUUACUUUCGGUUAUCU-AGCU-UUAUGAAGACUC------------CACACCACUCAUACAGCUAGAUAACCAAAGAUAACAACCA
URS0000D54DDC_8665/7-79    UUAUUUUUACUUUCGGUUAUCU-AGCU-UUAUGAAGACUU------------GAGCCCACUCAUACAGCUAGAUAACCAAAGAUAAC-----
URS000075E0EE_10116/24-99  GAGUUUUUACUUUCGGUUAUCU-AGCU-UUAUGAAGACC--------------AAUACACUCAUACAGCUAGAUAACCAAAGAUAACAACUC
URS0000D56347_8665/2-77    GAGUUUUUACUUUCGGUUAUCU-AGCU-UUAUGAAGACC--------------AACACACUCAUACAGCUAGAUAACCAAAGAUAACAACUC
URS0000489A4A_7227/2-77    CU-AUGUUGUCUUUGGUUAUCU-AGCU-GUAUGAGUG--AUA-----------AAUAACGUCAUAAAGCUAGCUUACCGAAGUUAAUAUUAG
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URS0000489A4A_7217/2-77    CU-AUGUUGUCUUUGGUUAUCU-AGCU-GUAUGAGUG--AUA-----------AAUAACGUCAUAAAGCUAGCUUACCGAAGUUAAUAUUAG
URS0000489A4A_7220/2-77    CU-AUGUUGUCUUUGGUUAUCU-AGCU-GUAUGAGUG--AUA-----------AAUAACGUCAUAAAGCUAGCUUACCGAAGUUAAUAUUAG
URS0000489A4A_7234/2-77    CU-AUGUUGUCUUUGGUUAUCU-AGCU-GUAUGAGUG--AUA-----------AAUAACGUCAUAAAGCUAGCUUACCGAAGUUAAUAUUAG
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URS00004A44E5_7159/3-79    CAAAG-UUCUCUUUGGUUAUCU-AGCU-GUAUGAGUGA-AUU-----------UAGAACAUCAUAAAGCUAGCAUACCGAAGUUAAUAGUUG
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URS000075BDC9_7029/1-67    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGUGUUACGUAU-------GAAGCUCCUCAUAGGUCUAGGUGACCGAAGUUA-------
URS0000D55D7A_225164/12-89 CUGUUUUUGUCUUUGGUUAUCU-AGCU-GUAUGAUUGAAAUA------------GAAACAUUAUAAAGCUAGGUUACCAAAGGCAAAAAUGG
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URS000075F018_7426/6-82    CGGACAUUUUCUUUGGUUAUCU-AGCU-GUAUGAGU--UUGG----------UUGUA-CAUCAUAAAGCUAGGUUACCGGAGUUGAGAUCCU
URS000075F018_7427/6-82    CGGACAUUUUCUUUGGUUAUCU-AGCU-GUAUGAGU--UUGG----------UUGUA-CAUCAUAAAGCUAGGUUACCGGAGUUGAGAUCCU
URS000075DACE_7460/6-82    CGGACAUUUUCUUUGGUUAUCU-AGCU-GUAUGAGU--AUUA----------UUCGA-CAUCAUAAAGCUAGGUUACCGGAGUUAAGCUCCU
URS000075F037_7091/18-89   CGGGCCGUCUCUUUGGUAUCCU-AGCU-GUAGGCGU--G-------------C-GCG--GCCCUAAAGUUAUGGUACCGAAGUUACGGCUCG
URS0000D508E0_7130/18-91   CGGCCCGUCUCUUUGGUAUCCU-AGCU-GUAGGCGU--C-------------CCGUG-AGCCCUAAAGUUAUGGUACCGAAGUUACGAGUCG
URS0000D5464F_34740/5-79   CGGCUCGUCUCUUUGGUAUCCU-AGCU-GUAGGCGU--GU------------CCUCG-UACCCUAAAGUUAUGGUACCGAAGUUACGAGCCG
URS0000D52E73_51655/17-92  CGGCUCGGCUCUUUGGUAUCCU-AGCU-GUAGGCGU--UUA-----------CGAAG-CGGCCUAAAGUUAUGGUACCGAAGUCCCGGGCCU
URS0000D4F868_46514/6-84   AUGCAAUUCUCUUUGGUUAUCU-AGCU-GUAUGAGUGGUCAU----------CUACG-CAUCAUAAAGCUAGGUUACCAAAGAUAAGUGUAG
URS0000D52D94_7004/1-61    ---------UCUUUGGUUAUCU-AGCU-GUAUGAGU--GCAU----------GUGUC-UGUCAUAAAGCUAGGUUACCGAAGUUA-------
URS000075D047_7668/13-89   UGCUU-UUCUCUUUGGUUAUCU-AGCU-GUAUGAGUGAU-GU----------CAAUG-CAUCAUAAAGCUAGGUUACCAAAGAUAAGUGCCU
URS0000D5044C_7654/11-87   UGCUU-UUGUCUUUGGUUAUCU-AGCU-GUAUGAGUGAA-GU----------CAAUG-CAUCAUAAAGCUAGGUUACCAAAGAUAAGUGCCU
URS000079CC8E_54126/10-88  AACUUCUUCGCUUUGGUUAUCU-UGCU-UUCUGACUAAAUGU----------CCAAG-GUUCAUAAAGCUAGGUUACCAAAGCUAAGCGGUG
URS0000D5675C_6253/1-77    UUGUCUUUCCCUUUGGUUAUCU-GGCU-GUAUGAGUGAGC------------CA-UAACAUCAUAAAGCUAGGUUACCAAAGCUAAGCACAA
URS0000D51881_6289/13-87   UGGUUCUUCUCUUUGGUGAUUU-GGCUUAUAUGACUGA--------------CA-UG-CAUCAUAAAGCUAGGUUACCAAAGCUAAGCGCCU
URS00009E5259_6279/5-82    UGCAACUUUACUUUGGUUAUCU-AGCU-GUAUGAGUAAGU------------UACUGGCUUCAUAAAGCUAGGUUACCAAAGCUAAGCACAA
URS0000D54721_6210/2-91    AGUUGCCAUUCUUUGGUUAUCU-AGCU-GUGUGAGGUUUAGCUUCAGUCAGCUCUUAUUUUCACAAGGCUAGAUUUCCAAACAAACGCACCU
URS0000D5081C_6211/2-91    AGUUGCCAUUCUUUGGUUAUCU-AGCU-GUGUGAGGUUUAGCUUCAGUCAGCUCUUAUUUUCACAAGGCUAGAUUUCCAAACAAACGCAUCU
URS000075A5A0_7460/32-106  GUUUAUUUUUCUUUGGUGAGCU-AACU-GUAUGGUGAAUU--------------GAAAGGCCAUAAAGCUAGUUCAGC-AAGGCAAGAUAUU
URS0000759CC7_7070/11-86   CUUUAUAUUUCUUUGGUGAUCU-AACU--UAUGAUUAACU-------------UUAUAAGUCAUAAAGCUAGAUUCACCAAAGAAAUAUGUG
URS00007E4303_7070/18-92   AUAUAUUCUUCUUUGGUGAUCU-AGUU-GUAUGA-GUGUU-------------UUAUAUAUCAUAAAGCUGGUUCAGC-AAAGCAGAUUGCA
URS000075E814_7460/9-84    GUGCUCUUUGCUUUGGUAAUCU-AGCU-UUAUGAUCCUUA-------------AUUAAAAUCAUAGAGCUAUAUUACCAAAGUAAAG-GCAA
URS00007599ED_7460/20-95   UUGC-CUUUACUUUGGUAAUAU-AGCU-CUAUGAUUUUAA-------------UUAAGGAUCAUAAAGCUAGAUUACCAAAGCAAAGAGCAC
URS0000D51C0A_32264/5-83   AUUUCCUCAUCUUUGGUUAUUU-AGCU-UUCUGAUUGCCCG-----------UACAAACAUCAUAAAGCUAUUUAACCAAAUUUGAGGACCC
URS0000D51CB7_32264/11-89  AUUUCCUCAUCUUUGGUUAUUU-AGCU-UUCUGAUUGCCCG-----------UACAAACAUCAUAAAGCUAUUUAACCAAAUUUGAGGACCC
URS0000337926_7227/6-84    AUUAUUUGCUCUUUGGUGAUUUUAGCU-GUAUGGUG--UUUAU----------GUAUAUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGU
URS000034465B_7238/6-82    AUUAUUUGGUCUUUGGUGAUUUUAGCU-GUAUGGUG----UAU----------AAGUAUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGU
URS00000A5DE5_7220/6-82    AUUAUUUGCUCUUUGGUGAUUUUAGCU-GUAUGGUG--UGU------------AUGUGUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGU
URS00004740E1_7245/6-84    AUUAUUUGCUCUUUGGUGAUUUUAGCU-GUAUGGUG--UGUUU----------AUGUGUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGU
URS000001732B_7222/6-82    AUUAUUUGCUCUUUGGUGAUUUUAGCU-CUAUGGUG--UGCG------------CAUAAUCCACAGAGCUUUAUUACCAAAAACCAAAUGGU
URS00002FB201_7244/6-82    AUUAUUUGCUCUUUGGUGAUUUUAGCU-GUAUGGUG--UGCG------------CGUAUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGU
URS00005358F7_7230/6-82    AUUAUUUGUUCUUUGGUGAUUUUAGCU-GUAUGGUG--UGCG------------CGUAUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGU
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URS000055E9CC_7260/5-83    AUUAUUUGGUCUUUGGUGAUUUUAGCU-GUAUGGUG--UAUGA----------GCAUAAUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGU
URS00000336D0_7237/6-84    AUUAUUUGAUCUUUGGUGAUUUUAGCU-GUAUGGUG--UAUAU----------CAAAGAUCCAUAGAGCUUUAUCACCAAAACCCAAAUGGU
URS00000336D0_7234/6-84    AUUAUUUGAUCUUUGGUGAUUUUAGCU-GUAUGGUG--UAUAU----------CAAAGAUCCAUAGAGCUUUAUCACCAAAACCCAAAUGGU
URS00004FF7A3_7165/6-87    CUUAUUGGGACUUUGGUGAUUUUAGCU-GUAUGUUGAAUGCAU---------UCCUAACCACAUAUAGCUUUAUCACCAAAAACCUAAUGUG
URS0000D55FB6_7159/6-86    UUUAUUGGAUCUUUGGUGAUUUUAGCU-GUAUGCUGA-UACGU---------UUCUGAUUGCAUAUAGCUUUAUCACCAAAAACCUAAUGAA
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URS00005D1218_7220/7-85    CUUGCCAUUGCUUUGGCGCUUU-AGCU-GUAUGAUAGA-UUU----------AAACUACUUCAUAAAGCUAGAUUACCAAAGCAUUGGCUUC
URS0000265538_7245/7-85    CUUGCCAUUGCUUUGGCGCUUU-AGCU-GUAUGAUAGA-UUU----------AUACUACUUCAUAAAGCUAGAUUACCAAAGCAUUGGCUUC
URS0000399ED2_7238/7-85    CUUGCCAUUGCUUUGGCGCUUU-AGCU-GUAUGAUAGA-UUU----------AAACUACUUCAUAAAGCUAGAUUACCAAAGCAUUGGCUUG
URS00005D63BD_7227/10-88   CUUGCCAUUGCUUUGGCGCUUU-AGCU-GUAUGAUAGA-UUU----------AAACUACUUCAUAAAGCUAGAUUACCAAAGCAUUGGCUUC
URS00003C1A18_7217/7-84    UUAACCGAUGCUUUGGCGCUUU-AGCU-GUAUGAUAGA-UUU----------AAA-UACUUCAUAAAGCUAGAUUACCAAAGCAUUGGCUUC
URS00003275E3_7260/1-76    -UUGCCUAUGCUUUGGCGCUUU-AGCU-GUAUGAUAGA-UUU----------G-ACUACUUCAUAAAGCUAGAUUACCAAAGCAUGGGCUC-
URS0000075904_7237/5-83    UCUGCUUCUGCUUUGGCGCUUU-AGCU-GUAUGAUAGA-UUU----------AAAAUACUUCAUAAAGCUAGAUUACCAAAGCAUUGGCUCU
URS00005DF546_7234/1-77    -CUGCUUCUGCUUUGGCGCUUU-AGCU-GUAUGAUAGA-UUU----------AAAAUACUUCAUAAAGCUAGAUUACCAAAGCAUUGGCUC-
URS000045D80B_7230/1-76    -UUGCCGUUGCUUUGGCGCUUU-AGCU-GUAUGAUAGA-UUU----------AAA-UACUUCAUAAAGCUAGAUUACCAAAGCAUUGGCUC-
URS0000336D7F_7244/8-85    ACUGCCGUUGCUUUGGCGCUUU-AGCU-GUAUGAUAGA-UUU----------GAA-UACUUCAUAAAGCUAGAUUACCAAAGCAUUGGCUCU
URS0000086A0C_7222/1-76    -UUGCCGUCGCUUUGGCGCUUU-AGCU-GUAUGAUAGA-UUU----------GAA-UACUUCAUAAAGCUAGAUUACCAAAGCAUCGGCGC-
URS0000D51360_7159/7-84    AUCGUCCAUGCUUUGGCGCUUU-AGCU-GUAUGAUAGAAUUU----------AA--UAUUUCAUAAAGCUAGAUUACCAAAGCAUGGAAGGC
URS0000D5348F_7176/1-75    -UCGUCCAUGCUUUGGCGCUUU-AGCU-GUAUGAUAGAAUUU----------AA--UAUUUCAUAAAGCUAGAUUACCAAAGCAUGGAAG--
URS000039BC2C_7165/8-87    UUUGUCCGCGCUUUGGCGCUUU-AGCU-GUAUGAUAGAAUUU----------GAACUAUUUCAUAAAGCUAGAUUACCAAAGCAUAGACGAA
URS000075C689_7091/13-87   CGCUGCGACGCUUUGGCGAUUU-AGCU-CCGUGACAUC--------------AUUC-CGUUCAUAAAGCUAGAUUACCAAAGCAUCGCGUCG
URS0000D56160_7130/13-88   CGAUGCGACGCUUUGGCGAUUU-AGCU-CCGUGACGUG--------------AAGCAUACUCAUAAAGCUAGAUUACCAAAGCACCGCGUCC
URS0000D5290E_34740/4-81   CGAUGCGACGCUUUGGCGAUUU-AGCU-CCAUGACGUUGC------------GUGUAUGCUCAUAAAGCUAGAUUACCAAAGCAUCGCGUCG
URS000075A41C_7091/8-82    CGACGCGAUGCUUUGGUAAUCU-AGCU-UUAUGAACGG--------------AAUGAUG-UCACGGAGCUAAAUCGCCAAAGCGUCGCAGCG
URS000059D864_7220/6-87    UGCUG--UUUCUUUGGUAUUCU-AGCU-GUA-GAUUGUUUCGCGC--ACAUUGUAUAUCAUC-UAAAGCUUUUAUACCAAAGCUC--CAGCU
URS000059D864_7245/6-87    UGCUG--UUUCUUUGGUAUUCU-AGCU-GUA-GAUUGUUUCGCGC--ACAUUGUAUAUCAUC-UAAAGCUUUUAUACCAAAGCUC--CAGCU
URS00001A24A5_7227/6-87    UGCUG--UUUCUUUGGUAUUCU-AGCU-GUA-GAUUGUUUCACGC--ACAUUGUAUAUCAUC-UAAAGCUUUUAUACCAAAGCUC--CAGCU
URS00001A24A5_7217/6-87    UGCUG--UUUCUUUGGUAUUCU-AGCU-GUA-GAUUGUUUCACGC--ACAUUGUAUAUCAUC-UAAAGCUUUUAUACCAAAGCUC--CAGCU
URS00001A24A5_7238/6-87    UGCUG--UUUCUUUGGUAUUCU-AGCU-GUA-GAUUGUUUCACGC--ACAUUGUAUAUCAUC-UAAAGCUUUUAUACCAAAGCUC--CAGCU
URS00005C4072_7237/6-87    UGCUG--UUUCUUUGGUAUUCU-AGCU-GUA-GAUUGUUUUUUGC--ACAUUGUAUAUCAUC-UAAAGCUUUUAUACCAAAGCUC--CAGCU
URS00005C4072_7234/6-87    UGCUG--UUUCUUUGGUAUUCU-AGCU-GUA-GAUUGUUUUUUGC--ACAUUGUAUAUCAUC-UAAAGCUUUUAUACCAAAGCUC--CAGCU
URS0000426A57_7260/5-86    UGCUG--UUUCUUUGGUAUUCU-AGCU-GUA-GAUUGUUUUUUGC--ACAUUGUAUAUCAUC-UAAAGCUUUUAUACCAAAGCUC--CAGCU
URS00000E4D30_7244/6-84    UGCUG--UUUCUUUGGUAUUCU-AGCU-GUA-GAUUGUUUUU-----ACAGUUUGUAUCAUC-UAAAGCUUUUAUACCAAAGCUC--CAGCU
URS0000042BAC_7230/6-84    UGCUG--UUUCUUUGGUAUUCU-AGCU-GUA-GAUUGUUUUC-----ACAUAUUGUAUCAUC-UAAAGCUUUUAUACCAAAGCUC--CAGCU
URS000019327C_7222/6-84    UGCUG--UUUCUUUGGUAUUCU-AGCU-GUA-GAUUGUUUCU-----AUAUCUUGUAUCAUC-UAAAGCUUUUAUACCAAAGCUC--CAGCU
URS0000D4F8F6_7159/1-82    --CUG--AAUCUUUGGUAUUCU-AGCU-GUA-GAAUGUUGAGCUUUGUGAUAUGGUAUCUUC-UAAAGCUUUAGUACCAGAGGUC--CAACU
URS0000D56457_7176/16-96   GGCUG--AAUCUUUGGUAUUCU-AGCU-GUA-GAAUGUUGAGCUU---GUUACGGUAUCUUC-UAAAGCUUUAGUACCAGAGGUC--CAACU
URS00004BD4F2_7165/6-85    GGCUG--UAUCUUUGGUAUUCU-AGCU-GUA-GAAUGUUGUUUUC---AUUGUAAUAUCU-C-UAAAGCUUUAGUACCAGAGGUC--CAACU
URS0000D56639_6233/1-63    ----------CUUUGGUGAUUU-AGCU-GUAUGAGUUUUACUA--------GACUUA-CAUCAUAAAGCUAGGUUACCAGAGCU--------
#=GC SS_cons               <<<<<-<<<<<<<<<<<<<<<<.<<<<.-<<<<<<_____............_______>>>>>>->>>>>>>>>>>>>>>>>>>>->>>>>
#=GC RF                    cgcuuuuuaucUUuGGUuaucU.AGCU.GUAUGacUGuuu............uauaaucguCAUAAAGCUAgauaACCaAAgauaagaagcg
//
