INFERNAL1/a [1.1.5 | Sep 2023] NAME FIE3 ACC RF00227 DESC FIE3 (ftz instability element 3') element STATES 199 NODES 58 CLEN 65 W 166 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 05:10:09 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00227/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 4.233398 CKSUM 2899442063 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.00 NC 38.80 EFP7GF -8.6747 0.71965 ECMLC 0.44165 -11.61427 2.36002 1600000 574791 0.002088 ECMGC 0.40775 -12.14627 1.79553 1600000 117745 0.003397 ECMLI 0.45485 -7.70350 5.05657 1600000 397920 0.003016 ECMGI 0.44677 -7.04792 4.80309 1600000 79708 0.005018 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 166 292 -7.674 -7.881 -0.032 -6.295 IL 1 1 2 1 4 1 19 168 294 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 167 293 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 19 166 292 -8.649 -0.013 -7.303 -1.373 0.344 -2.190 1.088 D 4 2 3 5 3 0 13 163 289 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 18 166 292 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 19 165 291 -8.649 -0.013 -7.303 -2.920 -4.302 1.902 -3.659 D 7 5 3 8 3 0 13 162 288 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 165 291 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 18 164 290 -8.649 -0.013 -7.303 1.897 -3.727 -3.237 -3.404 D 10 8 3 11 3 0 12 161 287 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 17 164 290 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 17 163 289 -8.649 -0.013 -7.303 -2.780 -2.565 -3.556 1.848 D 13 11 3 14 3 0 11 160 286 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 16 163 289 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 16 162 288 -8.649 -0.013 -7.303 1.897 -3.727 -3.237 -3.404 D 16 14 3 17 3 0 11 159 285 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 15 162 288 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 16 161 287 -8.649 -0.013 -7.303 1.897 -3.727 -3.237 -3.404 D 19 17 3 20 3 0 10 157 283 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 14 161 287 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 15 160 286 -8.649 -0.013 -7.303 -2.780 -2.565 -3.556 1.848 D 22 20 3 23 3 0 10 155 282 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 14 160 286 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 14 159 285 -1.900 -0.463 -7.303 -2.920 -4.302 1.902 -3.659 D 25 23 3 26 3 0 9 153 279 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 15 163 289 -0.289 -2.511 -7.300 0.000 0.000 0.000 0.000 [ MATL 9 ] 17 - g - - - ML 27 26 3 29 3 1 13 154 280 -8.649 -0.013 -7.303 0.635 -2.166 0.925 -1.620 D 28 26 3 29 3 0 8 151 278 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 12 154 281 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 18 - C - - - ML 30 29 3 32 3 1 12 153 279 -8.649 -0.013 -7.303 -1.689 1.343 -2.593 -0.018 D 31 29 3 32 3 0 8 150 277 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 11 153 280 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 19 - U - - - ML 33 32 3 35 3 1 11 152 278 -8.649 -0.013 -7.303 -1.370 0.362 -2.188 1.076 D 34 32 3 35 3 0 7 150 276 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 11 153 279 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 20 - c - - - ML 36 35 3 38 3 1 10 151 277 -8.649 -0.013 -7.303 0.437 0.810 -1.759 -0.744 D 37 35 3 38 3 0 7 149 275 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 10 152 278 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 21 - A - - - ML 39 38 3 41 3 1 9 150 276 -8.649 -0.013 -7.303 1.897 -3.727 -3.237 -3.404 D 40 38 3 41 3 0 7 148 274 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 9 151 277 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 22 - A - - - ML 42 41 3 44 3 1 8 149 275 -8.649 -0.463 -1.879 1.472 -2.294 -0.427 -1.845 D 43 41 3 44 3 0 6 147 273 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 9 150 276 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 23 - A - - - ML 45 44 3 47 3 1 8 149 275 -8.204 -0.017 -6.858 1.014 -1.613 0.228 -1.051 D 46 44 3 47 3 0 6 146 272 -8.480 -3.993 -0.098 IL 47 47 3 47 3 1 8 149 275 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 24 - A - - - ML 48 47 3 50 3 1 7 148 274 -1.300 -1.307 -2.398 1.117 -1.636 0.053 -1.085 D 49 47 3 50 3 0 6 146 272 -8.480 -0.217 -2.872 IL 50 50 3 50 3 1 8 148 274 -2.515 -0.325 -5.215 0.000 0.000 0.000 0.000 [ MATL 17 ] 26 - C - - - ML 51 50 3 53 3 1 7 146 272 -8.443 -0.015 -7.097 -2.900 1.830 -3.712 -2.096 D 52 50 3 53 3 0 4 145 271 -7.748 -0.380 -2.140 IL 53 53 3 53 3 1 6 147 273 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 27 - U - - - ML 54 53 3 56 3 1 6 145 271 -9.003 -0.012 -7.321 -2.780 -2.565 -3.556 1.848 D 55 53 3 56 3 0 1 144 270 -5.620 -0.734 -1.403 IL 56 56 3 56 3 1 5 146 272 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 92 - A - - MR 57 56 3 59 3 1 5 144 270 -9.003 -0.012 -7.321 1.445 -0.713 -1.862 -1.349 D 58 56 3 59 3 0 1 142 268 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 4 145 271 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 91 - U - - MR 60 59 3 62 3 1 4 143 269 -9.003 -0.012 -7.321 -2.780 -2.565 -3.556 1.848 D 61 59 3 62 3 0 1 141 267 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 3 144 270 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 90 - A - - MR 63 62 3 65 3 1 3 142 268 -9.003 -0.012 -7.321 1.408 -2.241 -0.247 -1.772 D 64 62 3 65 3 0 1 140 266 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 3 143 269 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 89 - a - - MR 66 65 3 68 3 1 2 141 267 -9.003 -0.254 -2.649 0.532 -1.254 0.264 -0.099 D 67 65 3 68 3 0 0 140 266 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 3 142 268 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 88 - u - - MR 69 68 3 71 3 1 3 141 267 -8.764 -0.014 -7.081 0.633 -1.078 -1.287 0.646 D 70 68 3 71 3 0 0 139 265 -7.975 -0.360 -2.205 IR 71 71 3 71 3 1 2 141 267 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 87 - u - - MR 72 71 3 74 3 1 3 140 266 -9.003 -0.012 -7.321 0.393 -0.287 -1.293 0.545 D 73 71 3 74 3 0 0 137 263 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 2 140 266 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 86 - g - - MR 75 74 3 77 3 1 2 139 265 -9.003 -0.012 -7.321 -0.885 -1.570 0.940 0.267 D 76 74 3 77 3 0 0 136 262 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 139 265 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 85 - a - - MR 78 77 3 80 3 1 2 138 264 -9.003 -0.012 -7.321 0.947 -1.307 -1.463 0.385 D 79 77 3 80 3 0 0 135 261 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 138 264 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 84 - c - - MR 81 80 3 83 3 1 2 137 263 -9.003 -0.012 -7.321 -0.936 0.819 0.182 -0.788 D 82 80 3 83 3 0 0 134 260 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 137 263 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 83 - A - - MR 84 83 3 86 3 1 2 136 262 -9.003 -0.012 -7.321 1.897 -3.727 -3.237 -3.404 D 85 83 3 86 3 0 0 133 259 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 136 262 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 82 - U - - MR 87 86 3 89 3 1 2 135 261 -9.003 -0.012 -7.321 -2.780 -2.565 -3.556 1.848 D 88 86 3 89 3 0 0 131 257 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 135 261 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 81 - G - - MR 90 89 3 92 3 1 1 134 260 -9.003 -0.012 -7.321 -2.920 -4.302 1.902 -3.659 D 91 89 3 92 3 0 0 129 255 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 134 260 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 80 - u - - MR 93 92 3 95 3 1 1 133 259 -9.003 -0.012 -7.321 0.355 -1.252 -1.530 0.967 D 94 92 3 95 3 0 0 125 251 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 133 259 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 79 - U - - MR 96 95 3 98 3 1 1 132 258 -2.689 -0.775 -1.940 -1.556 -0.253 -2.335 1.391 D 97 95 3 98 3 0 0 113 239 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 143 270 -0.211 -2.933 -7.648 0.000 0.000 0.000 0.000 [ MATR 33 ] - 65 - A - - MR 99 98 3 101 3 1 1 72 122 -8.580 -0.016 -6.898 1.014 -1.613 0.228 -1.051 D 100 98 3 101 3 0 0 68 118 -8.502 -3.680 -0.122 IR 101 101 3 101 3 1 1 72 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 64 - u - - MR 102 101 3 104 3 1 1 71 121 -8.580 -0.016 -6.898 0.289 -0.966 -1.255 0.885 D 103 101 3 104 3 0 0 67 117 -8.502 -3.680 -0.122 IR 104 104 3 104 3 1 1 71 121 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 63 - A - - MR 105 104 3 107 3 1 1 70 120 -8.580 -0.016 -6.898 1.805 -2.858 -2.442 -2.450 D 106 104 3 107 3 0 0 67 117 -8.502 -3.680 -0.122 IR 107 107 3 107 3 1 1 70 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 62 - c - - MR 108 107 3 110 3 1 1 69 119 -8.580 -0.016 -6.898 -0.966 0.845 -1.789 0.487 D 109 107 3 110 3 0 0 66 116 -8.502 -3.680 -0.122 IR 110 110 3 110 3 1 1 69 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 61 - a - - MR 111 110 3 113 3 1 1 68 118 -8.580 -0.016 -6.898 0.870 -1.043 -1.189 0.319 D 112 110 3 113 3 0 0 66 116 -8.502 -3.680 -0.122 IR 113 113 3 113 3 1 1 68 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 60 - U - - MR 114 113 3 116 5 1 1 67 117 -7.305 -0.034 -7.120 -7.332 -8.224 -1.940 -1.858 -2.693 1.726 D 115 113 3 116 5 0 0 66 116 -6.869 -0.210 -4.496 -5.927 -3.921 IR 116 116 3 116 5 1 1 67 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 28 59 u a - - MP 117 116 3 121 6 2 2 66 116 -9.429 -9.368 -0.017 -8.145 -8.425 -8.820 -3.181 -3.267 -3.246 0.112 -2.649 -3.977 1.412 -3.221 -3.278 0.186 -3.769 -1.554 2.190 -3.440 1.792 0.876 ML 118 116 3 121 6 1 1 64 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 64 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 60 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 65 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 65 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 29 58 G U - - MP 123 122 6 127 6 2 2 64 114 -9.429 -9.368 -0.017 -8.145 -8.425 -8.820 -4.378 -3.016 -4.540 0.547 -5.925 -6.132 -1.325 -4.650 -4.186 2.168 -4.727 3.118 -1.516 -5.210 -3.266 -3.214 ML 124 122 6 127 6 1 1 62 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 62 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 58 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 63 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 63 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 30 57 g c - - MP 129 128 6 133 6 2 2 62 112 -9.429 -9.368 -0.017 -8.145 -8.425 -8.820 -4.410 -3.034 -4.500 0.529 -5.726 -5.613 -1.061 -4.733 -4.259 2.758 -4.752 2.646 -1.278 -4.850 -3.027 -3.253 ML 130 128 6 133 6 1 1 60 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 60 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 56 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 61 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 61 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 31 56 A U - - MP 135 134 6 139 6 2 2 60 110 -9.429 -9.368 -0.017 -8.145 -8.425 -8.820 -5.109 -3.887 -4.926 3.790 -6.062 -7.314 -1.680 -4.880 -4.893 -0.364 -5.498 -1.211 -2.074 -6.208 -3.608 -3.771 ML 136 134 6 139 6 1 1 58 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 58 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 55 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 59 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 59 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 32 55 G U - - MP 141 140 6 145 6 2 2 58 108 -9.429 -9.368 -0.017 -8.145 -8.425 -8.820 -4.473 -3.127 -4.663 0.476 -5.960 -6.927 -1.488 -4.639 -4.220 0.241 -4.812 3.610 -1.783 -5.762 -3.404 -3.272 ML 142 140 6 145 6 1 1 56 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 56 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 53 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 57 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 57 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 33 54 A U - - MP 147 146 6 151 6 2 2 56 106 -9.429 -9.368 -0.017 -8.145 -8.425 -8.820 -5.109 -3.887 -4.926 3.790 -6.062 -7.314 -1.680 -4.880 -4.893 -0.364 -5.498 -1.211 -2.074 -6.208 -3.608 -3.771 ML 148 146 6 151 6 1 1 55 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 54 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 52 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 55 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 55 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 34 53 C G - - MP 153 152 6 157 4 2 2 54 104 -7.543 -8.789 -0.050 -5.242 -6.073 -6.107 -5.482 -2.276 -3.951 -5.692 3.839 -4.922 -5.630 -2.180 -5.677 -4.130 -0.647 -6.035 -1.743 -4.436 ML 154 152 6 157 4 1 1 53 103 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 53 103 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 51 101 -12.737 -14.007 -2.036 -0.404 IL 157 157 5 157 4 1 1 53 103 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 54 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 52 - U - - MR 159 158 6 161 5 1 1 52 102 -7.707 -0.025 -7.523 -7.735 -8.626 -2.780 -2.565 -3.556 1.848 D 160 158 6 161 5 0 0 51 100 -5.352 -0.707 -2.978 -4.409 -2.404 IR 161 161 3 161 5 1 1 52 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 35 51 u a - - MP 162 161 3 166 6 2 2 51 101 -9.429 -9.368 -0.017 -8.145 -8.425 -8.820 -3.939 -3.863 -3.880 -0.312 -3.025 -4.530 1.188 -3.660 -3.893 -0.216 -4.316 -1.893 2.813 -4.167 -0.777 1.828 ML 163 161 3 166 6 1 1 50 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 3 166 6 1 1 49 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 3 166 6 0 0 47 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 51 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 50 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 36 50 G C - - MP 168 167 6 172 4 2 2 49 99 -7.674 -7.881 -0.032 -6.295 -4.620 -3.118 -4.651 0.369 -5.747 -5.140 -0.968 -5.033 -4.448 3.292 -4.842 1.747 -1.215 -4.606 -2.971 -3.494 ML 169 167 6 172 4 1 1 48 98 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 47 97 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 46 96 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 49 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 49 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 37 - A - - - ML 174 173 6 176 3 1 1 47 97 -8.649 -0.013 -7.303 1.897 -3.727 -3.237 -3.404 D 175 173 6 176 3 0 0 45 95 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 48 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 38 - c - - - ML 177 176 3 179 3 1 1 46 96 -8.649 -0.221 -2.843 -0.208 0.833 -1.686 0.059 D 178 176 3 179 3 0 0 43 93 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 47 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 39 - a - - - ML 180 179 3 182 3 1 1 46 96 -8.443 -0.015 -7.097 0.707 -1.092 -0.216 0.054 D 181 179 3 182 3 0 0 39 89 -7.748 -3.261 -0.166 IL 182 182 3 182 3 1 1 46 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 40 - a - - - ML 183 182 3 185 3 1 1 45 95 -2.418 -0.625 -2.606 0.660 0.490 -1.481 -0.607 D 184 182 3 185 3 0 0 34 83 -7.748 -3.261 -0.166 IL 185 185 3 185 3 1 1 48 98 -0.532 -1.765 -6.135 0.000 0.000 0.000 0.000 [ MATL 53 ] 46 - a - - - ML 186 185 3 188 3 1 1 16 35 -8.197 -0.018 -6.851 0.933 -0.009 -1.264 -0.555 D 187 185 3 188 3 0 0 14 33 -8.496 -4.009 -0.097 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 47 - u - - - ML 189 188 3 191 3 1 1 15 33 -8.197 -0.018 -6.851 0.343 -0.004 -1.111 0.346 D 190 188 3 191 3 0 0 13 32 -8.496 -4.009 -0.097 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 48 - u - - - ML 192 191 3 194 3 1 1 13 31 -8.197 -0.018 -6.851 -0.365 0.088 -0.181 0.354 D 193 191 3 194 3 0 0 12 30 -8.496 -0.214 -2.888 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 49 - a - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 0.960 -1.313 -1.467 0.368 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 57 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME FIE3 ACC RF00227 DESC FIE3 (ftz instability element 3') element LENG 65 MAXL 247 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 05:10:09 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00227/CM NSEQ 5 EFFN 4.604492 CKSUM 2899442063 STATS LOCAL MSV -7.6768 0.71965 STATS LOCAL VITERBI -9.1434 0.71965 STATS LOCAL FORWARD -3.4554 0.71965 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.19595 1.75905 1.54884 1.16193 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 0.00000 * 1 2.40426 1.13643 2.97518 0.62051 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 2 3.50951 4.47607 0.06101 4.02325 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 3 0.06392 4.07769 3.73125 3.86260 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 4 3.41937 3.25532 3.95883 0.09474 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 5 0.06392 4.07769 3.73125 3.86260 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 6 0.06392 4.07769 3.73125 3.86260 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 7 3.41937 3.25532 3.95883 0.09474 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 8 3.50951 4.47607 0.06101 4.02325 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.34709 1.27523 4.27667 2.06539 0.13555 1.09861 0.40547 9 0.93853 2.96231 0.72966 2.58996 17 g - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 10 2.62984 0.43788 3.26392 1.40948 18 C - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 11 2.40179 1.12401 2.97378 0.62856 19 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 12 1.07808 0.80330 2.66530 1.94965 20 c - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 13 0.06392 4.07769 3.73125 3.86260 21 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 14 0.35250 3.05416 1.68093 2.75349 22 A - - : 1.38629 1.38629 1.38629 1.38629 0.34709 4.27667 1.27523 1.46634 0.26236 1.09861 0.40547 15 0.66897 2.55601 1.21770 2.16947 23 A - - : 1.38629 1.38629 1.38629 1.38629 0.03855 3.96813 3.96813 1.46634 0.26236 3.09623 0.04627 16 0.59655 2.57228 1.34135 2.19427 24 A - - : 1.38629 1.38629 1.38629 1.38629 0.97240 0.86333 1.60909 0.08737 2.48093 0.09479 2.40309 17 3.52033 0.10449 4.07477 2.94446 26 C - - : 1.38629 1.38629 1.38629 1.38629 0.03257 4.13387 4.13387 1.46634 0.26236 0.17313 1.83902 18 3.41937 3.25532 3.95883 0.09474 27 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 19 2.48919 1.72794 2.34745 0.44043 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 20 2.29006 3.57490 0.18054 3.32707 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 21 2.30150 3.41405 0.19077 3.20254 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 22 0.12599 3.83851 2.62655 3.70807 31 A - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 23 2.34774 3.66713 0.16550 3.46112 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 24 0.12567 3.84252 2.62758 3.71309 33 A - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 25 4.07670 0.09872 3.95876 2.84815 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 26 2.83822 1.91095 2.65447 0.32408 35 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 27 2.40894 3.34743 0.18243 3.17800 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 28 0.06392 4.07769 3.73125 3.86260 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 29 1.54234 0.78917 2.60277 1.35546 38 c - - _ 1.38629 1.38629 1.38629 1.38629 0.17536 4.27667 1.91763 1.46634 0.26236 1.09861 0.40547 30 0.88828 2.16855 1.53486 1.35166 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03257 4.13387 4.13387 1.46634 0.26236 2.53217 0.08282 31 0.91800 1.02836 2.46020 1.84723 40 a - - _ 1.38629 1.38629 1.38629 1.38629 0.46738 1.60771 1.75439 1.60281 0.22481 2.53217 0.08282 32 0.72379 1.38357 2.30053 1.80665 46 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03875 3.96309 3.96309 1.46634 0.26236 3.10817 0.04571 33 1.14522 1.38151 2.17844 1.14750 47 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03875 3.96309 3.96309 1.46634 0.26236 3.10817 0.04571 34 1.65978 1.31449 1.50485 1.14207 48 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03875 3.96309 3.96309 1.46634 0.26236 0.09361 2.41502 35 0.70700 2.33871 2.44556 1.12778 49 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 36 3.41173 0.46989 3.16653 1.20465 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 37 0.75915 2.85821 1.74715 1.20299 51 a - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 38 3.41937 3.25532 3.95883 0.09474 52 U - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 39 3.12511 4.11840 0.08469 3.86302 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 40 3.91620 3.01073 3.64715 0.10008 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 41 3.64779 2.55706 3.45041 0.14539 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 42 3.91699 3.01088 3.64754 0.10005 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 43 3.41810 0.84734 3.21717 0.69594 57 u - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 44 3.53713 1.25887 3.37700 0.42652 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 45 1.15811 2.52414 0.92658 1.56118 59 g - - > 1.38629 1.38629 1.38629 1.38629 0.34709 4.27667 1.27523 1.46634 0.26236 1.09861 0.40547 46 2.82668 2.75429 3.35192 0.17183 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.03855 3.96813 3.96813 1.46634 0.26236 3.09623 0.04627 47 0.77005 2.13754 2.23995 1.16283 61 a - - : 1.38629 1.38629 1.38629 1.38629 0.03855 3.96813 3.96813 1.46634 0.26236 3.09623 0.04627 48 2.10361 0.77893 2.68034 1.04826 62 c - - : 1.38629 1.38629 1.38629 1.38629 0.03855 3.96813 3.96813 1.46634 0.26236 3.09623 0.04627 49 0.12116 3.46803 3.17024 3.19574 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.03855 3.96813 3.96813 1.46634 0.26236 3.09623 0.04627 50 1.18423 2.08565 2.28702 0.75881 64 u - - : 1.38629 1.38629 1.38629 1.38629 0.03855 3.96813 3.96813 1.46634 0.26236 3.09623 0.04627 51 0.66897 2.55601 1.21770 2.16947 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.29487 1.44197 3.96813 2.53135 0.08289 0.09479 2.40309 52 2.53791 1.56435 3.07950 0.40682 79 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 53 1.13571 2.29819 2.49039 0.70221 80 u - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 54 3.50951 4.47607 0.06101 4.02325 81 G - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 55 3.41937 3.25532 3.95883 0.09474 82 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 56 0.06392 4.07769 3.73125 3.86260 83 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 57 2.09604 0.79282 1.24670 1.98747 84 c - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 58 0.71599 2.33461 2.44283 1.11618 85 a - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 59 2.05053 2.52948 0.71228 1.20029 86 g - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 60 1.10869 1.58596 2.30988 1.00516 87 u - - : 1.38629 1.38629 1.38629 1.38629 0.20773 4.27667 1.75050 1.46634 0.26236 1.09861 0.40547 61 0.93769 2.16635 2.31059 0.92970 88 u - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10255 4.10255 1.46634 0.26236 0.14836 1.98137 62 1.01279 2.28712 1.19283 1.46155 89 a - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 63 0.39678 3.01783 1.55302 2.70305 90 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 64 3.41937 3.25532 3.95883 0.09474 91 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 65 0.36839 1.88340 2.74173 2.39006 92 A - - : 1.38629 1.38629 1.38629 1.38629 0.01418 4.26268 * 1.46634 0.26236 0.00000 * //