INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD43 ACC RF00221 DESC Small nucleolar RNA SNORD43 STATES 196 NODES 62 CLEN 64 W 80 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 20:16:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00221/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.207031 CKSUM 1033084611 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 45.70 NC 44.90 EFP7GF -9.9239 0.71892 ECMLC 0.67235 -5.35264 2.99667 1600000 328980 0.003648 ECMGC 0.39829 -19.19065 -4.65769 1600000 130579 0.003063 ECMLI 0.65817 -3.66106 4.50180 1600000 258502 0.004642 ECMGI 0.43160 -13.93032 -1.28353 1600000 93884 0.004261 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 80 101 -9.150 -9.089 -0.186 -3.169 -8.146 -8.541 IL 1 1 2 1 6 1 21 82 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 22 82 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 64 c g - - MP 3 2 3 7 6 2 23 80 101 -8.987 -8.926 -0.023 -7.703 -7.983 -8.378 0.521 -2.278 -2.454 0.943 -2.141 -3.219 2.165 -2.588 -2.490 1.221 -2.994 -0.543 1.319 -2.607 -0.072 -1.566 ML 4 2 3 7 6 1 20 79 100 -7.551 -7.897 -0.400 -2.306 -7.747 -5.276 -0.845 1.254 -1.619 -0.448 MR 5 2 3 7 6 1 18 79 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 14 76 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 20 80 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 20 80 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 63 a u - - MP 9 8 6 13 6 2 21 78 99 -9.150 -9.089 -0.186 -3.169 -8.146 -8.541 -2.979 -2.620 -3.077 2.804 -3.048 -4.059 0.853 0.475 -3.091 1.042 -3.629 -0.497 0.505 -3.348 -0.948 -2.124 ML 10 8 6 13 6 1 18 77 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 17 77 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 14 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 19 78 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 19 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 62 a u - - MP 15 14 6 19 6 2 19 77 97 -8.987 -8.926 -0.023 -7.703 -7.983 -8.378 -3.043 -2.185 -3.149 2.216 -3.502 -4.255 0.711 -3.334 -3.063 1.909 -3.585 1.561 0.421 -3.459 -1.190 -2.034 ML 16 14 6 19 6 1 18 76 96 -7.551 -7.897 -0.400 -2.306 -7.747 -5.276 -0.845 1.254 -1.619 -0.448 MR 17 14 6 19 6 1 16 75 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 14 74 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 18 76 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 18 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 61 a u - - MP 21 20 6 25 4 2 17 74 95 -7.057 -7.264 -0.320 -2.437 -3.510 -2.523 -3.562 2.609 -4.018 -4.602 0.345 -3.793 -3.521 2.435 -4.019 -0.095 0.041 -3.815 -1.597 -2.436 ML 22 20 6 25 4 1 16 75 95 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 14 74 95 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 13 73 94 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 18 76 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 17 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - g - - - ML 27 26 6 29 3 1 17 72 92 -7.825 -0.023 -6.479 0.390 -1.362 0.775 -0.762 D 28 26 6 29 3 0 13 71 91 -7.513 -0.459 -1.905 IL 29 29 3 29 3 1 16 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 30 29 3 32 3 1 16 71 91 -8.066 -0.019 -6.720 1.760 -2.578 -2.190 -2.141 D 31 29 3 32 3 0 10 70 90 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 15 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 33 32 3 35 3 1 15 70 90 -8.066 -0.019 -6.720 -1.677 -1.640 -2.419 1.669 D 34 32 3 35 3 0 9 69 89 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 14 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 36 35 3 38 3 1 14 69 89 -8.066 -0.019 -6.720 -1.798 -3.050 1.769 -2.438 D 37 35 3 38 3 0 8 68 88 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 13 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 39 38 3 41 3 1 14 68 88 -8.066 -0.019 -6.720 1.760 -2.578 -2.190 -2.141 D 40 38 3 41 3 0 8 67 87 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 13 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 42 41 3 44 3 1 13 67 87 -8.066 -0.019 -6.720 -1.677 -1.640 -2.419 1.669 D 43 41 3 44 3 0 7 66 86 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 12 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 45 44 3 47 3 1 12 66 86 -8.066 -0.019 -6.720 -1.798 -3.050 1.769 -2.438 D 46 44 3 47 3 0 6 65 85 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 11 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 48 47 3 50 3 1 11 65 85 -8.066 -0.019 -6.720 1.760 -2.578 -2.190 -2.141 D 49 47 3 50 3 0 5 64 84 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 10 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 51 50 3 53 3 1 11 64 84 -8.066 -0.019 -6.720 1.760 -2.578 -2.190 -2.141 D 52 50 3 53 3 0 5 63 83 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 10 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - C - - - ML 54 53 3 56 3 1 10 63 83 -8.066 -0.019 -6.720 -1.991 1.685 -2.821 -1.354 D 55 53 3 56 3 0 4 61 82 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 9 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 57 56 3 59 3 1 9 62 82 -8.066 -0.019 -6.720 -1.677 -1.640 -2.419 1.669 D 58 56 3 59 3 0 3 60 80 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 8 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 60 59 3 62 3 1 9 61 81 -8.066 -0.019 -6.720 -0.863 -0.050 -1.622 1.111 D 61 59 3 62 3 0 3 59 79 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 7 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 63 62 3 65 3 1 8 60 80 -8.066 -0.019 -6.720 1.760 -2.578 -2.190 -2.141 D 64 62 3 65 3 0 2 58 78 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 7 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 66 65 3 68 3 1 7 59 79 -8.066 -0.019 -6.720 -0.888 -0.137 -1.644 1.157 D 67 65 3 68 3 0 1 57 77 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 69 68 3 71 3 1 7 58 78 -8.066 -0.019 -6.720 -1.677 -1.640 -2.419 1.669 D 70 68 3 71 3 0 0 56 76 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 5 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 72 71 3 74 3 1 6 57 76 -8.066 -0.019 -6.720 -1.798 -3.050 1.769 -2.438 D 73 71 3 74 3 0 0 55 75 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 5 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 75 74 3 77 3 1 5 56 75 -8.066 -0.019 -6.720 1.760 -2.578 -2.190 -2.141 D 76 74 3 77 3 0 0 54 74 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 4 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 78 77 3 80 3 1 5 55 74 -8.066 -0.019 -6.720 -1.991 1.685 -2.821 -1.354 D 79 77 3 80 3 0 0 53 73 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 3 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - G - - - ML 81 80 3 83 3 1 4 54 73 -8.066 -0.019 -6.720 0.179 -1.690 1.065 -1.102 D 82 80 3 83 3 0 0 52 72 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 3 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 84 83 3 86 3 1 4 52 72 -8.066 -0.019 -6.720 -1.798 -3.050 1.769 -2.438 D 85 83 3 86 3 0 0 51 71 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - G - - - ML 87 86 3 89 3 1 3 51 71 -8.066 -0.019 -6.720 0.179 -1.690 1.065 -1.102 D 88 86 3 89 3 0 0 50 70 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 2 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 90 89 3 92 3 1 3 50 70 -8.066 -0.019 -6.720 -1.991 1.685 -2.821 -1.354 D 91 89 3 92 3 0 0 49 69 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - G - - - ML 93 92 3 95 3 1 2 49 69 -8.066 -0.019 -6.720 0.179 -1.690 1.065 -1.102 D 94 92 3 95 3 0 0 48 68 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - g - - - ML 96 95 3 98 3 1 2 48 68 -8.066 -0.019 -6.720 -0.574 -1.300 0.973 -0.059 D 97 95 3 98 3 0 0 47 67 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - - - ML 99 98 3 101 3 1 2 47 67 -8.066 -0.019 -6.720 1.760 -2.578 -2.190 -2.141 D 100 98 3 101 3 0 0 46 66 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - C - - - ML 102 101 3 104 3 1 1 46 66 -8.066 -0.019 -6.720 -1.991 1.685 -2.821 -1.354 D 103 101 3 104 3 0 0 45 64 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - A - - - ML 105 104 3 107 3 1 1 45 65 -8.066 -0.019 -6.720 1.760 -2.578 -2.190 -2.141 D 106 104 3 107 3 0 0 44 63 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - G - - - ML 108 107 3 110 3 1 1 44 63 -8.066 -0.019 -6.720 -1.798 -3.050 1.769 -2.438 D 109 107 3 110 3 0 0 43 62 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - A - - - ML 111 110 3 113 3 1 1 43 62 -8.066 -0.019 -6.720 1.760 -2.578 -2.190 -2.141 D 112 110 3 113 3 0 0 42 61 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - a - - - ML 114 113 3 116 3 1 1 42 61 -8.066 -0.019 -6.720 0.644 -1.505 0.637 -0.918 D 115 113 3 116 3 0 0 41 60 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - A - - - ML 117 116 3 119 3 1 1 41 60 -8.066 -0.019 -6.720 1.760 -2.578 -2.190 -2.141 D 118 116 3 119 3 0 0 40 59 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - C - - - ML 120 119 3 122 3 1 1 40 59 -8.066 -0.019 -6.720 -1.991 1.685 -2.821 -1.354 D 121 119 3 122 3 0 0 38 58 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 123 122 3 125 3 1 1 39 58 -8.066 -0.019 -6.720 -0.025 -0.933 -1.306 1.063 D 124 122 3 125 3 0 0 37 57 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - G - - - ML 126 125 3 128 3 1 1 38 57 -8.066 -0.019 -6.720 -0.527 -0.536 1.000 -0.700 D 127 125 3 128 3 0 0 36 56 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - - - ML 129 128 3 131 3 1 1 37 56 -8.066 -0.019 -6.720 -1.677 -1.640 -2.419 1.669 D 130 128 3 131 3 0 0 35 55 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - G - - - ML 132 131 3 134 3 1 1 35 55 -8.066 -0.019 -6.720 -1.798 -3.050 1.769 -2.438 D 133 131 3 134 3 0 0 34 54 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - U - - - ML 135 134 3 137 3 1 1 34 54 -8.066 -0.019 -6.720 -1.677 -1.640 -2.419 1.669 D 136 134 3 137 3 0 0 33 53 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - G - - - ML 138 137 3 140 3 1 1 33 52 -8.066 -0.019 -6.720 -1.798 -3.050 1.769 -2.438 D 139 137 3 140 3 0 0 32 51 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - C - - - ML 141 140 3 143 3 1 1 32 51 -8.066 -0.019 -6.720 -1.991 1.685 -2.821 -1.354 D 142 140 3 143 3 0 0 31 50 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - U - - - ML 144 143 3 146 3 1 1 31 50 -8.066 -0.019 -6.720 -1.677 -1.640 -2.419 1.669 D 145 143 3 146 3 0 0 30 49 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - G - - - ML 147 146 3 149 3 1 1 30 49 -8.066 -0.019 -6.720 -1.798 -3.050 1.769 -2.438 D 148 146 3 149 3 0 0 29 48 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - A - - - ML 150 149 3 152 3 1 1 29 48 -8.066 -0.019 -6.720 1.760 -2.578 -2.190 -2.141 D 151 149 3 152 3 0 0 28 47 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - U - - - ML 153 152 3 155 3 1 1 28 47 -8.066 -0.019 -6.720 -1.677 -1.640 -2.419 1.669 D 154 152 3 155 3 0 0 27 46 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - U - - - ML 156 155 3 158 3 1 1 27 46 -8.066 -0.019 -6.720 -1.677 -1.640 -2.419 1.669 D 157 155 3 158 3 0 0 26 45 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - G - - - ML 159 158 3 161 3 1 1 26 45 -8.066 -0.019 -6.720 -1.798 -3.050 1.769 -2.438 D 160 158 3 161 3 0 0 25 44 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - U - - - ML 162 161 3 164 3 1 1 25 43 -8.066 -0.019 -6.720 -1.677 -1.640 -2.419 1.669 D 163 161 3 164 3 0 0 24 43 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - C - - - ML 165 164 3 167 3 1 1 23 42 -8.066 -0.019 -6.720 -1.991 1.685 -2.821 -1.354 D 166 164 3 167 3 0 0 22 41 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - A - - - ML 168 167 3 170 3 1 1 22 41 -8.066 -0.019 -6.720 1.760 -2.578 -2.190 -2.141 D 169 167 3 170 3 0 0 21 40 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - u - - - ML 171 170 3 173 3 1 1 21 40 -8.066 -0.019 -6.720 -0.347 0.244 -0.364 0.325 D 172 170 3 173 3 0 0 20 39 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - G - - - ML 174 173 3 176 3 1 1 20 39 -8.066 -0.019 -6.720 -1.798 -3.050 1.769 -2.438 D 175 173 3 176 3 0 0 19 38 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - U - - - ML 177 176 3 179 3 1 1 19 37 -8.066 -0.019 -6.720 -1.677 -1.640 -2.419 1.669 D 178 176 3 179 3 0 0 18 37 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - U - - - ML 180 179 3 182 3 1 1 17 36 -8.066 -0.019 -6.720 -1.677 -1.640 -2.419 1.669 D 181 179 3 182 3 0 0 17 36 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - C - - - ML 183 182 3 185 3 1 1 16 35 -8.066 -0.019 -6.720 -1.991 1.685 -2.821 -1.354 D 184 182 3 185 3 0 0 16 34 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - U - - - ML 186 185 3 188 3 1 1 15 33 -8.066 -0.019 -6.720 -1.677 -1.640 -2.419 1.669 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - G - - - ML 189 188 3 191 3 1 1 13 31 -8.066 -0.019 -6.720 -1.798 -3.050 1.769 -2.438 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - A - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 1.760 -2.578 -2.190 -2.141 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD43 ACC RF00221 DESC Small nucleolar RNA SNORD43 LENG 64 MAXL 147 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 20:16:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00221/CM NSEQ 4 EFFN 2.410156 CKSUM 1033084611 STATS LOCAL MSV -8.5754 0.71892 STATS LOCAL VITERBI -8.7593 0.71892 STATS LOCAL FORWARD -3.9038 0.71892 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.28272 1.67420 1.34267 1.29422 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 0.00000 * 1 1.48895 1.04241 1.68150 1.44523 1 c - - < 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 2 0.74809 1.55456 1.71801 1.99490 2 a - - < 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 3 1.19974 1.72564 0.94696 2.01926 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 4 0.88238 2.43450 0.92005 2.30195 4 a - - < 1.38629 1.38629 1.38629 1.38629 0.23018 3.97132 1.67791 1.46634 0.26236 1.09861 0.40547 5 1.11533 2.36771 0.82841 1.95366 5 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04636 3.78750 3.78750 1.46634 0.26236 0.18386 1.78413 6 0.14948 3.27243 2.99326 2.97971 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 7 2.64104 2.59973 3.15970 0.20828 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 8 2.73434 3.61685 0.14258 3.19228 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 9 0.14948 3.27243 2.99326 2.97971 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 10 2.64105 2.59973 3.15970 0.20828 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 11 2.73434 3.61685 0.14258 3.19228 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 12 0.14948 3.27243 2.99326 2.97971 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 13 0.14948 3.27243 2.99326 2.97971 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 14 2.88654 0.19347 3.46279 2.42145 14 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 15 2.64105 2.59973 3.15970 0.20828 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 16 2.02968 1.41803 2.55923 0.59954 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 17 0.14948 3.27243 2.99326 2.97971 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 18 2.04869 1.48170 2.57557 0.56610 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 19 2.64105 2.59973 3.15970 0.20828 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 20 2.73434 3.61685 0.14258 3.19228 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 21 0.14948 3.27243 2.99326 2.97971 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 22 2.88654 0.19347 3.46279 2.42145 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 23 1.26778 2.60974 0.62589 2.20541 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 24 2.73434 3.61685 0.14258 3.19228 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 25 1.26778 2.60974 0.62589 2.20541 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 26 2.88654 0.19347 3.46279 2.42145 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 27 1.26778 2.60974 0.62589 2.20541 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 28 1.82172 2.32892 0.68598 1.43862 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 29 0.14948 3.27243 2.99326 2.97971 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 30 2.88654 0.19347 3.46279 2.42145 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 31 0.14948 3.27243 2.99326 2.97971 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 32 2.73434 3.61685 0.14258 3.19228 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 33 0.14948 3.27243 2.99326 2.97971 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 34 0.93121 2.47568 0.92689 2.07121 34 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 35 0.14948 3.27243 2.99326 2.97971 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 36 2.88654 0.19347 3.46279 2.42145 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 37 1.41234 2.06535 2.32761 0.63088 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 38 1.79323 1.76389 0.66239 1.92016 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 39 2.64105 2.59973 3.15970 0.20828 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 40 2.73434 3.61685 0.14258 3.19228 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 41 2.64105 2.59973 3.15970 0.20828 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 42 2.73434 3.61685 0.14258 3.19228 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 43 2.88654 0.19347 3.46279 2.42145 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 44 2.64105 2.59973 3.15970 0.20828 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 45 2.73434 3.61685 0.14258 3.19228 45 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 46 0.14948 3.27243 2.99326 2.97971 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 47 2.64105 2.59973 3.15970 0.20828 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 48 2.64105 2.59973 3.15970 0.20828 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 49 2.73434 3.61685 0.14258 3.19228 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 50 2.64105 2.59973 3.15970 0.20828 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 51 2.88654 0.19347 3.46279 2.42145 51 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 52 0.14948 3.27243 2.99326 2.97971 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 53 1.64792 1.20304 1.63582 1.16322 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 54 2.73434 3.61685 0.14258 3.19228 54 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 55 2.64105 2.59973 3.15970 0.20828 55 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 56 2.64105 2.59973 3.15970 0.20828 56 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 57 2.88654 0.19347 3.46279 2.42145 57 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 58 2.64105 2.59973 3.15970 0.20828 58 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 59 2.73434 3.61685 0.14258 3.19228 59 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 60 0.14948 3.27243 2.99326 2.97971 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03843 3.97132 3.97132 1.46634 0.26236 1.09861 0.40547 61 2.56802 1.03985 2.27035 0.76244 61 u - - > 1.38629 1.38629 1.38629 1.38629 0.36138 3.97132 1.25725 1.46634 0.26236 1.09861 0.40547 62 2.28275 1.38726 1.99264 0.66962 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.05269 3.66264 3.66264 1.46634 0.26236 0.12446 2.14539 63 2.24793 1.95033 1.90947 0.50419 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.36138 3.97132 1.25725 1.46634 0.26236 1.09861 0.40547 64 1.28435 1.77210 1.01376 1.65894 64 g - - > 1.38629 1.38629 1.38629 1.38629 0.02669 3.63664 * 1.46634 0.26236 0.00000 * //