INFERNAL1/a [1.1.5 | Sep 2023] NAME snoR66 ACC RF00202 DESC Small nucleolar RNA R66 STATES 232 NODES 72 CLEN 76 W 93 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 22:19:27 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00202/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 1.696289 CKSUM 3452444775 NULL 0.000 0.000 0.000 0.000 GA 43.00 TC 43.30 NC 42.90 EFP7GF -8.4102 0.71874 ECMLC 0.68049 -5.88667 2.48564 1600000 357670 0.003355 ECMGC 0.38039 -16.05024 -2.19398 1600000 77823 0.005140 ECMLI 0.62540 -4.51239 4.09988 1600000 262031 0.004580 ECMGI 0.40611 -10.71437 1.44491 1600000 55799 0.007169 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 93 113 -6.774 -8.019 -0.086 -4.473 IL 1 1 2 1 4 2 31 94 114 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 33 95 115 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 78 - C - - MR 3 2 3 5 5 3 33 93 113 -7.014 -0.041 -6.829 -7.041 -7.933 -1.521 1.559 -2.337 -0.980 D 4 2 3 5 5 0 27 91 112 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 2 31 93 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 77 u a - - MP 6 5 3 10 6 4 33 92 112 -9.071 -9.010 -0.067 -4.837 -8.066 -8.461 -1.817 -1.958 -0.866 1.093 -1.876 -2.830 1.762 -2.270 -2.053 1.135 -1.104 -0.476 1.797 -2.133 0.006 -1.202 ML 7 5 3 10 6 1 29 90 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 27 90 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 24 88 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 30 91 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 30 91 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 76 C G - - MP 12 11 6 16 6 4 31 90 110 -9.026 -8.965 -0.022 -7.742 -8.022 -8.417 -4.141 -4.006 -3.897 -0.281 -2.712 -4.361 3.401 -3.480 -3.936 0.029 -4.237 -1.950 0.839 -4.235 -0.412 -2.791 ML 13 11 6 16 6 1 28 89 109 -6.730 -7.076 -0.806 -1.485 -6.926 -4.455 -0.086 0.506 -0.790 0.083 MR 14 11 6 16 6 1 26 89 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 23 87 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 29 90 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 29 89 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 75 C G - - MP 18 17 6 22 4 2 29 88 108 -6.849 -7.056 -0.057 -5.470 -4.367 -4.256 -4.087 -0.506 -2.846 -4.523 3.490 -3.638 -4.131 -0.238 -4.411 -2.201 0.685 -4.448 -0.549 -2.977 ML 19 17 6 22 4 1 27 88 108 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 4 1 24 87 108 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 21 17 6 22 4 0 23 86 107 -4.568 -4.250 -2.265 -0.520 IL 22 22 5 22 4 1 28 89 110 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 23 23 6 23 3 1 28 88 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 4 - g - - - ML 24 23 6 26 3 1 28 86 105 -7.873 -0.022 -6.527 -0.289 0.209 0.255 -0.266 D 25 23 6 26 3 0 22 84 104 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 27 87 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 5 - a - - - ML 27 26 3 29 3 1 27 84 104 -7.873 -0.022 -6.527 0.660 -1.323 0.503 -0.731 D 28 26 3 29 3 0 22 83 103 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 26 86 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - U - - - ML 30 29 3 32 3 1 26 83 103 -7.873 -0.022 -6.527 -1.319 -1.345 -2.043 1.567 D 31 29 3 32 3 0 21 82 102 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 25 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - G - - - ML 33 32 3 35 3 1 26 82 102 -7.873 -0.022 -6.527 -1.385 -2.573 1.674 -1.959 D 34 32 3 35 3 0 20 81 101 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 25 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - A - - - ML 36 35 3 38 3 1 25 81 101 -7.873 -0.022 -6.527 1.676 -2.188 -1.838 -1.713 D 37 35 3 38 3 0 19 80 100 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 24 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - U - - - ML 39 38 3 41 3 1 24 80 100 -7.873 -0.022 -6.527 -1.319 -1.345 -2.043 1.567 D 40 38 3 41 3 0 19 79 99 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 23 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - G - - - ML 42 41 3 44 3 1 23 79 99 -7.873 -0.022 -6.527 -1.385 -2.573 1.674 -1.959 D 43 41 3 44 3 0 18 78 98 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 23 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - G - - - ML 45 44 3 47 3 1 23 78 98 -7.873 -0.022 -6.527 -1.385 -2.573 1.674 -1.959 D 46 44 3 47 3 0 17 77 97 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 22 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - C - - - ML 48 47 3 50 3 1 22 77 97 -7.873 -0.022 -6.527 -1.521 1.559 -2.337 -0.980 D 49 47 3 50 3 0 16 76 96 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 21 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 51 50 3 53 3 1 21 76 96 -7.873 -0.022 -6.527 1.676 -2.188 -1.838 -1.713 D 52 50 3 53 3 0 16 75 94 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 20 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - U - - - ML 54 53 3 56 3 1 21 75 95 -7.873 -0.022 -6.527 -1.319 -1.345 -2.043 1.567 D 55 53 3 56 3 0 15 74 93 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 20 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - G - - - ML 57 56 3 59 3 1 20 74 94 -7.873 -0.022 -6.527 -1.385 -2.573 1.674 -1.959 D 58 56 3 59 3 0 14 72 92 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 19 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - A - - - ML 60 59 3 62 3 1 19 73 92 -7.873 -0.022 -6.527 1.245 -1.446 -0.454 -0.907 D 61 59 3 62 3 0 14 71 91 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 18 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - A - - - ML 63 62 3 65 3 1 19 72 91 -2.086 -0.408 -6.527 1.676 -2.188 -1.838 -1.713 D 64 62 3 65 3 0 13 70 89 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 18 72 91 -2.031 -0.479 -4.731 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 66 65 3 68 3 1 18 70 90 -7.873 -0.022 -6.527 -1.319 -1.345 -2.043 1.567 D 67 65 3 68 3 0 12 69 88 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 17 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 69 68 3 71 3 1 17 69 89 -7.873 -0.022 -6.527 -1.521 1.559 -2.337 -0.980 D 70 68 3 71 3 0 12 68 87 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 16 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 72 71 3 74 3 1 16 68 87 -7.873 -0.022 -6.527 -1.319 -1.345 -2.043 1.567 D 73 71 3 74 3 0 11 67 86 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 15 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 75 74 3 77 3 1 16 67 86 -7.873 -0.022 -6.527 -1.319 -1.345 -2.043 1.567 D 76 74 3 77 3 0 10 66 85 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 15 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 78 77 3 80 3 1 15 66 85 -7.873 -0.022 -6.527 -1.319 -1.345 -2.043 1.567 D 79 77 3 80 3 0 10 65 84 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 14 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 81 80 3 83 3 1 14 65 84 -7.873 -0.022 -6.527 -1.385 -2.573 1.674 -1.959 D 82 80 3 83 3 0 9 63 83 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 13 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 84 83 3 86 3 1 14 64 83 -7.873 -0.022 -6.527 1.676 -2.188 -1.838 -1.713 D 85 83 3 86 3 0 8 62 82 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 13 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - G - - - ML 87 86 3 89 3 1 13 63 82 -7.873 -0.022 -6.527 -1.385 -2.573 1.674 -1.959 D 88 86 3 89 3 0 8 61 81 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 12 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 90 89 3 92 3 1 12 62 81 -7.873 -0.022 -6.527 1.676 -2.188 -1.838 -1.713 D 91 89 3 92 3 0 7 60 80 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 11 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 93 92 3 95 3 1 12 61 80 -7.873 -0.022 -6.527 -1.521 1.559 -2.337 -0.980 D 94 92 3 95 3 0 7 59 79 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 11 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - C - - - ML 96 95 3 98 3 1 11 59 79 -7.873 -0.022 -6.527 -1.521 1.559 -2.337 -0.980 D 97 95 3 98 3 0 6 58 77 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 10 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 99 98 3 101 3 1 10 58 77 -7.873 -0.022 -6.527 -1.319 -1.345 -2.043 1.567 D 100 98 3 101 3 0 6 57 76 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 9 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - G - - - ML 102 101 3 104 3 1 10 57 76 -8.269 -0.020 -6.587 -1.385 -2.573 1.674 -1.959 D 103 101 3 104 3 0 5 56 75 -5.620 -0.734 -1.403 IL 104 104 3 104 3 1 8 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 74 - A - - MR 105 104 3 107 3 1 9 56 75 -8.269 -0.020 -6.587 1.676 -2.188 -1.838 -1.713 D 106 104 3 107 3 0 4 55 74 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 8 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 73 - G - - MR 108 107 3 110 3 1 8 55 74 -8.269 -0.020 -6.587 -1.385 -2.573 1.674 -1.959 D 109 107 3 110 3 0 4 54 73 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 7 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 72 - U - - MR 111 110 3 113 3 1 8 54 73 -8.269 -0.020 -6.587 -1.319 -1.345 -2.043 1.567 D 112 110 3 113 3 0 3 53 72 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 7 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 71 - C - - MR 114 113 3 116 3 1 7 53 72 -8.269 -0.020 -6.587 -1.521 1.559 -2.337 -0.980 D 115 113 3 116 3 0 2 52 71 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 6 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 70 - C - - MR 117 116 3 119 3 1 7 52 71 -8.269 -0.020 -6.587 -1.521 1.559 -2.337 -0.980 D 118 116 3 119 3 0 2 51 70 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 5 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 69 - u - - MR 120 119 3 122 3 1 6 51 70 -8.269 -0.020 -6.587 -0.635 0.457 -1.405 0.683 D 121 119 3 122 3 0 1 50 69 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 5 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 68 - U - - MR 123 122 3 125 3 1 6 50 69 -8.269 -0.020 -6.587 -1.319 -1.345 -2.043 1.567 D 124 122 3 125 3 0 1 49 68 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 5 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 67 - a - - MR 126 125 3 128 3 1 5 49 68 -8.269 -0.020 -6.587 0.567 -0.809 -1.003 0.535 D 127 125 3 128 3 0 0 48 67 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 4 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 66 - a - - MR 129 128 3 131 3 1 5 48 67 -8.269 -0.020 -6.587 0.575 -0.918 0.029 -0.058 D 130 128 3 131 3 0 0 47 66 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 4 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 65 - U - - MR 132 131 3 134 3 1 4 47 66 -8.269 -0.020 -6.587 -0.780 -0.349 -1.516 1.191 D 133 131 3 134 3 0 0 46 65 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 3 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 64 - A - - MR 135 134 3 137 3 1 4 46 65 -8.269 -0.020 -6.587 1.676 -2.188 -1.838 -1.713 D 136 134 3 137 3 0 0 45 64 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 3 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 63 - C - - MR 138 137 3 140 3 1 3 45 64 -8.269 -0.020 -6.587 -0.869 1.087 -1.672 0.021 D 139 137 3 140 3 0 0 44 63 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 2 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 62 - G - - MR 141 140 3 143 3 1 3 44 63 -8.269 -0.020 -6.587 -1.385 -2.573 1.674 -1.959 D 142 140 3 143 3 0 0 43 62 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 2 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 61 - A - - MR 144 143 3 146 3 1 3 43 62 -8.269 -0.020 -6.587 1.676 -2.188 -1.838 -1.713 D 145 143 3 146 3 0 0 42 61 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 60 - A - - MR 147 146 3 149 3 1 2 42 61 -8.269 -0.020 -6.587 1.676 -2.188 -1.838 -1.713 D 148 146 3 149 3 0 0 41 60 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 59 - u - - MR 150 149 3 152 3 1 2 41 60 -8.269 -0.020 -6.587 -0.635 0.457 -1.405 0.683 D 151 149 3 152 3 0 0 40 59 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 58 - A - - MR 153 152 3 155 3 1 2 40 59 -8.269 -0.020 -6.587 1.676 -2.188 -1.838 -1.713 D 154 152 3 155 3 0 0 39 58 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 57 - C - - MR 156 155 3 158 3 1 1 39 58 -8.269 -0.020 -6.587 -1.521 1.559 -2.337 -0.980 D 157 155 3 158 3 0 0 37 56 -6.390 -1.568 -0.620 IR 158 158 3 158 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 56 - u - - MR 159 158 3 161 3 1 1 38 57 -8.269 -0.020 -6.587 0.511 -0.799 -1.010 0.589 D 160 158 3 161 3 0 0 36 55 -6.390 -1.568 -0.620 IR 161 161 3 161 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 55 - A - - MR 162 161 3 164 3 1 1 37 56 -3.689 -0.133 -6.587 1.676 -2.188 -1.838 -1.713 D 163 161 3 164 3 0 0 35 54 -6.390 -1.568 -0.620 IR 164 164 3 164 3 1 1 37 56 -2.222 -0.434 -4.461 0.000 0.000 0.000 0.000 [ MATR 52 ] - 53 - A - - MR 165 164 3 167 3 1 1 36 55 -8.269 -0.020 -6.587 1.676 -2.188 -1.838 -1.713 D 166 164 3 167 3 0 0 34 53 -6.390 -1.568 -0.620 IR 167 167 3 167 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 53 ] - 52 - a - - MR 168 167 3 170 3 1 1 35 54 -8.269 -0.020 -6.587 0.631 0.192 -1.047 -0.276 D 169 167 3 170 3 0 0 33 52 -6.390 -1.568 -0.620 IR 170 170 3 170 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 54 ] - 51 - A - - MR 171 170 3 173 3 1 1 34 53 -8.269 -0.020 -6.587 1.676 -2.188 -1.838 -1.713 D 172 170 3 173 3 0 0 32 51 -6.390 -1.568 -0.620 IR 173 173 3 173 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 55 ] - 50 - G - - MR 174 173 3 176 3 1 1 33 52 -8.269 -0.020 -6.587 -1.385 -2.573 1.674 -1.959 D 175 173 3 176 3 0 0 31 50 -6.390 -1.568 -0.620 IR 176 176 3 176 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 56 ] - 49 - U - - MR 177 176 3 179 3 1 1 32 51 -8.269 -0.020 -6.587 -1.319 -1.345 -2.043 1.567 D 178 176 3 179 3 0 0 30 49 -6.390 -1.568 -0.620 IR 179 179 3 179 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 57 ] - 48 - A - - MR 180 179 3 182 3 1 1 31 50 -8.269 -0.020 -6.587 1.676 -2.188 -1.838 -1.713 D 181 179 3 182 3 0 0 29 48 -6.390 -1.568 -0.620 IR 182 182 3 182 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 58 ] - 47 - G - - MR 183 182 3 185 5 1 1 30 49 -7.014 -0.041 -6.829 -7.041 -7.933 -1.385 -2.573 1.674 -1.959 D 184 182 3 185 5 0 0 29 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 185 185 3 185 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 32 46 A U - - MP 186 185 3 190 4 2 2 29 48 -6.774 -8.019 -0.488 -1.869 -3.644 -2.714 -3.673 3.227 -3.938 -4.988 0.352 -3.724 -3.571 1.238 -4.111 -0.215 -0.066 -4.200 -1.590 -2.516 ML 187 185 3 190 4 1 1 28 47 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 188 185 3 190 4 1 1 28 47 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 189 185 3 190 4 0 0 26 45 -12.737 -14.007 -2.036 -0.404 IL 190 190 5 190 4 1 1 29 47 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 191 191 6 191 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 60 ] - 45 - U - - MR 192 191 6 194 3 1 1 27 46 -7.920 -0.025 -6.237 -0.678 -0.834 -1.352 1.276 D 193 191 6 194 3 0 0 25 44 -7.818 -2.996 -0.201 IR 194 194 3 194 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 61 ] - 44 - C - - MR 195 194 3 197 5 1 1 26 45 -6.692 -0.052 -6.507 -6.719 -7.611 -0.700 1.157 -1.463 -0.337 D 196 194 3 197 5 0 0 25 44 -6.314 -0.320 -3.940 -5.371 -3.366 IR 197 197 3 197 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 33 43 g c - - MP 198 197 3 202 6 2 2 25 44 -9.071 -9.010 -0.022 -7.786 -8.066 -8.461 -3.347 -2.799 -3.335 0.820 -2.881 -4.024 2.165 -3.332 -3.382 2.397 -3.816 -0.606 1.014 -3.447 -0.516 -2.252 ML 199 197 3 202 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 3 202 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 3 202 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 202 202 5 202 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 34 42 A U - - MP 204 203 6 208 4 2 2 23 42 -6.849 -7.056 -0.493 -1.873 -3.644 -2.714 -3.673 3.227 -3.938 -4.988 0.352 -3.724 -3.571 1.238 -4.111 -0.215 -0.066 -4.200 -1.590 -2.516 ML 205 203 6 208 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 207 203 6 208 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 208 208 5 208 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 209 209 6 209 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 35 - A - - - ML 210 209 6 212 3 1 1 20 39 -7.493 -0.029 -6.147 1.417 -1.462 -1.182 -0.930 D 211 209 6 212 3 0 0 18 37 -7.763 -3.276 -0.165 IL 212 212 3 212 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 36 - U - - - ML 213 212 3 215 3 1 1 19 38 -7.493 -0.029 -6.147 -0.678 -0.834 -1.352 1.276 D 214 212 3 215 3 0 0 17 36 -7.763 -3.276 -0.165 IL 215 215 3 215 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 37 - U - - - ML 216 215 3 218 3 1 1 18 36 -7.493 -0.029 -6.147 -0.678 -0.834 -1.352 1.276 D 217 215 3 218 3 0 0 17 35 -7.763 -0.376 -2.154 IL 218 218 3 218 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 38 - U - - - ML 219 218 3 221 3 1 1 16 35 -7.873 -0.022 -6.527 -1.319 -1.345 -2.043 1.567 D 220 218 3 221 3 0 0 16 34 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 39 - U - - - ML 222 221 3 224 3 1 1 15 33 -7.873 -0.022 -6.527 -1.319 -1.345 -2.043 1.567 D 223 221 3 224 3 0 0 15 33 -6.174 -1.687 -0.566 IL 224 224 3 224 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 40 - C - - - ML 225 224 3 227 3 1 1 13 32 -7.873 -0.022 -6.527 -1.521 1.559 -2.337 -0.980 D 226 224 3 227 3 0 0 13 32 -6.174 -1.687 -0.566 IL 227 227 3 227 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 41 - U - - - ML 228 227 3 230 2 1 1 1 1 * 0.000 -1.319 -1.345 -2.043 1.567 D 229 227 3 230 2 0 0 0 0 * 0.000 IL 230 230 3 230 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 71 ] - - - - - - E 231 230 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME snoR66 ACC RF00202 DESC Small nucleolar RNA R66 LENG 76 MAXL 165 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 22:19:27 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00202/CM NSEQ 6 EFFN 1.895508 CKSUM 3452444775 STATS LOCAL MSV -8.7651 0.71874 STATS LOCAL VITERBI -9.4702 0.71874 STATS LOCAL FORWARD -3.3901 0.71874 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27428 1.53801 1.48812 1.27382 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 0.00000 * 1 1.59430 1.38769 1.49801 1.12787 1 u - - < 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 2 2.73067 0.37308 2.51187 1.80120 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 3 2.91572 0.31085 2.69075 1.92975 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 4 1.61826 1.22162 1.18589 1.60183 4 g - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 5 0.91793 2.34969 1.01697 1.94097 5 a - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 6 2.39960 2.39999 2.90728 0.26932 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 7 2.46279 3.30556 0.19600 2.88040 7 G - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 8 0.19873 3.01208 2.75877 2.69315 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 9 2.39960 2.39999 2.90728 0.26932 9 U - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 10 2.46279 3.30556 0.19600 2.88040 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 11 2.46279 3.30556 0.19600 2.88040 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 12 2.57151 0.26638 3.14185 2.16953 12 C - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 13 0.19873 3.01208 2.75877 2.69315 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 14 2.39960 2.39999 2.90728 0.26932 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 15 2.46279 3.30556 0.19600 2.88040 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 16 0.50085 2.44145 1.70846 2.07303 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 17 0.19873 3.01208 2.75877 2.69315 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.34578 1.30564 3.84744 0.15063 1.96729 1.09861 0.40547 18 2.39960 2.39999 2.90728 0.26932 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 19 2.57151 0.26638 3.14185 2.16953 20 C - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 20 2.39960 2.39999 2.90728 0.26932 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 21 2.39960 2.39999 2.90728 0.26932 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 22 2.39960 2.39999 2.90728 0.26932 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 23 2.46279 3.30556 0.19600 2.88040 24 G - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 24 0.19873 3.01208 2.75877 2.69315 25 A - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 25 2.46279 3.30556 0.19600 2.88040 26 G - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 26 0.19873 3.01208 2.75877 2.69315 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 27 2.57151 0.26638 3.14185 2.16953 28 C - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 28 2.57151 0.26638 3.14185 2.16953 29 C - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 29 2.39960 2.39999 2.90728 0.26932 30 U - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 30 2.46279 3.30556 0.19600 2.88040 31 G - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 31 0.44881 2.50564 1.64294 2.44669 32 A - - < 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 32 2.01574 1.20331 0.96626 1.68161 33 g - - < 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 33 0.45226 2.49631 1.64202 2.43230 34 A - - < 1.38629 1.38629 1.38629 1.38629 0.34578 3.84744 1.30564 1.46634 0.26236 1.09861 0.40547 34 0.37211 2.46662 2.26684 2.10199 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05855 3.56021 3.56021 1.46634 0.26236 2.68802 0.07044 35 1.91494 2.00916 2.38783 0.46726 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05855 3.56021 3.56021 1.46634 0.26236 2.68802 0.07044 36 1.91494 2.00916 2.38783 0.46726 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05855 3.56021 3.56021 1.46634 0.26236 0.14622 1.99487 37 2.39960 2.39999 2.90728 0.26932 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 38 2.39960 2.39999 2.90728 0.26932 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 39 2.57151 0.26638 3.14185 2.16953 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 40 2.39960 2.39999 2.90728 0.26932 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 41 2.66794 1.91059 2.31784 0.37961 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 42 1.92651 1.04902 1.09003 1.78465 43 c - - > 1.38629 1.38629 1.38629 1.38629 0.34578 3.84744 1.30564 1.46634 0.26236 1.09861 0.40547 43 1.94341 0.53527 2.47767 1.67484 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.05855 3.56021 3.56021 1.46634 0.26236 2.68802 0.07044 44 1.91494 2.00916 2.38783 0.46726 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.05855 3.56021 3.56021 1.46634 0.26236 0.14622 1.99487 45 2.68505 1.91196 2.32355 0.37678 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 46 2.46279 3.30556 0.19600 2.88040 47 G - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 47 0.19873 3.01208 2.75877 2.69315 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 48 2.39960 2.39999 2.90728 0.26932 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 49 2.46279 3.30556 0.19600 2.88040 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 50 0.19873 3.01208 2.75877 2.69315 51 A - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 51 0.93637 1.23533 2.14750 1.60725 52 a - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 52 0.19873 3.01208 2.75877 2.69315 53 A - - - 1.38629 1.38629 1.38629 1.38629 0.14431 2.17997 3.84744 0.34236 1.23819 1.09861 0.40547 53 0.19873 3.01208 2.75877 2.69315 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 54 1.02474 1.96551 2.11400 0.96687 56 u - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 55 2.57151 0.26638 3.14185 2.16953 57 C - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 56 0.19873 3.01208 2.75877 2.69315 58 A - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 57 1.86931 1.04761 2.40893 0.90366 59 u - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 58 0.19873 3.01208 2.75877 2.69315 60 A - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 59 0.19873 3.01208 2.75877 2.69315 61 A - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 60 2.46279 3.30556 0.19600 2.88040 62 G - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 61 2.05245 0.59743 2.61683 1.39302 63 C - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 62 0.19873 3.01208 2.75877 2.69315 64 A - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 63 1.98061 1.63930 2.49434 0.53555 65 U - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 64 0.98078 2.04522 1.35671 1.43497 66 a - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 65 0.98416 1.97187 2.10921 1.00590 67 a - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 66 2.39960 2.39999 2.90728 0.26932 68 U - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 67 1.86931 1.04761 2.40893 0.90366 69 u - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 68 2.57151 0.26638 3.14185 2.16953 70 C - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 69 2.57151 0.26638 3.14185 2.16953 71 C - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 70 2.39960 2.39999 2.90728 0.26932 72 U - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 71 2.46279 3.30556 0.19600 2.88040 73 G - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 72 0.19873 3.01208 2.75877 2.69315 74 A - - - 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 73 2.21338 2.88107 0.26251 2.72605 75 G - - > 1.38629 1.38629 1.38629 1.38629 0.13434 3.84744 2.25980 1.46634 0.26236 1.09861 0.40547 74 2.09612 2.69408 0.31125 2.56484 76 G - - > 1.38629 1.38629 1.38629 1.38629 0.04765 3.76075 3.76075 1.46634 0.26236 0.34275 1.23725 75 1.30499 1.75695 1.07889 1.53117 77 g - - > 1.38629 1.38629 1.38629 1.38629 0.04361 3.84744 3.84744 1.46634 0.26236 1.09861 0.40547 76 2.57151 0.26638 3.14185 2.16953 78 C - - : 1.38629 1.38629 1.38629 1.38629 0.02204 3.82588 * 1.46634 0.26236 0.00000 * //