INFERNAL1/a [1.1.4 | Dec 2020] NAME BLV_package ACC RF00192 DESC Bovine leukaemia virus RNA packaging signal STATES 174 NODES 49 CLEN 55 W 71 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:23:43 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 2.143555 CKSUM 2081699073 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 85.40 NC 38.50 EFP7GF -10.6981 0.71929 ECMLC 0.62679 -10.08889 0.44945 1600000 886788 0.001353 ECMGC 0.39482 -21.27356 -5.33590 1600000 216200 0.001850 ECMLI 0.57604 -10.03886 1.14127 1600000 751814 0.001596 ECMGI 0.43123 -16.16150 -2.75600 1600000 129620 0.003086 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 3 0 1 71 91 -5.315 -15.784 -0.037 IL 1 1 2 1 3 1 14 94 137 -0.610 -4.491 -1.736 0.000 0.000 0.000 0.000 IR 2 2 3 2 2 1 13 73 93 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 1 ] - - - - - - B 3 2 3 4 69 0 12 71 91 [ BEGL 2 ] - - - - - - S 4 3 1 5 4 0 0 35 54 -0.043 -6.877 -6.284 -6.924 [ MATP 3 ] 1 21 A U - - MP 5 4 1 9 6 2 2 35 54 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -3.937 -2.932 -3.944 3.418 -4.356 -5.433 -0.046 -3.977 -3.831 0.921 -4.385 -0.385 -0.463 -4.596 -1.987 -2.770 ML 6 4 1 9 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 7 4 1 9 6 1 1 34 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 8 4 1 9 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 9 9 5 9 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 10 10 6 10 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 20 U A - - MP 11 10 6 15 6 2 2 33 52 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -4.379 -4.209 -4.196 -0.490 -3.099 -4.743 1.233 -3.807 -4.199 -0.263 -4.563 -2.102 3.411 -4.523 -0.770 -3.004 ML 12 10 6 15 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 13 10 6 15 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 14 10 6 15 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 15 15 5 15 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 16 16 6 16 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 19 G U - - MP 17 16 6 21 6 2 2 31 50 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -3.719 -2.458 -3.894 1.068 -4.695 -5.422 -0.281 -3.904 -3.530 1.217 -4.057 3.184 -0.637 -4.606 -2.223 -2.574 ML 18 16 6 21 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 6 21 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 6 21 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 18 G C - - MP 23 22 6 27 6 2 2 29 48 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -4.149 -2.779 -4.180 0.677 -4.870 -4.582 -0.264 -4.549 -4.027 3.377 -4.408 0.701 -0.550 -4.069 -2.256 -3.077 ML 24 22 6 27 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 25 22 6 27 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 26 22 6 27 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 27 27 5 27 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 28 28 6 28 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 17 G C - - MP 29 28 6 33 6 2 2 27 46 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -4.901 -3.170 -5.016 0.093 -5.456 -4.755 -0.781 -5.269 -4.430 3.674 -4.756 -0.876 -1.162 -4.572 -2.827 -3.891 ML 30 28 6 33 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 6 33 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 32 28 6 33 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 33 33 5 33 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 16 A U - - MP 35 34 6 39 4 2 2 25 44 -7.033 -7.240 -0.050 -5.654 -3.937 -2.932 -3.944 3.418 -4.356 -5.433 -0.046 -3.977 -3.831 0.921 -4.385 -0.385 -0.463 -4.596 -1.987 -2.770 ML 36 34 6 39 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 38 34 6 39 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 39 39 5 39 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 40 40 6 40 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - A - - - ML 41 40 6 43 3 1 1 22 41 -8.044 -0.019 -6.698 1.751 -2.532 -2.148 -2.091 D 42 40 6 43 3 0 0 21 40 -6.174 -1.687 -0.566 IL 43 43 3 43 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - A - - - ML 44 43 3 46 3 1 1 21 40 -8.044 -0.019 -6.698 1.751 -2.532 -2.148 -2.091 D 45 43 3 46 3 0 0 20 39 -6.174 -1.687 -0.566 IL 46 46 3 46 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - U - - - ML 47 46 3 49 3 1 1 20 39 -8.044 -0.019 -6.698 -0.919 -0.296 -1.668 1.228 D 48 46 3 49 3 0 0 19 38 -6.174 -1.687 -0.566 IL 49 49 3 49 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - U - - - ML 50 49 3 52 3 1 1 19 37 -8.044 -0.019 -6.698 -1.634 -1.604 -2.375 1.658 D 51 49 3 52 3 0 0 18 37 -6.174 -1.687 -0.566 IL 52 52 3 52 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - C - - - ML 53 52 3 55 3 1 1 17 36 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 54 52 3 55 3 0 0 17 36 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - C - - - ML 56 55 3 58 3 1 1 16 35 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 57 55 3 58 3 0 0 16 34 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 13 - C - - - ML 59 58 3 61 3 1 1 15 33 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 60 58 3 61 3 0 0 15 33 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - C - - - ML 62 61 3 64 3 1 1 13 31 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 63 61 3 64 3 0 0 13 32 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 15 - C - - - ML 65 64 3 67 2 1 1 1 1 * 0.000 -1.007 1.121 -1.831 0.066 D 66 64 3 67 2 0 0 0 0 * 0.000 IL 67 67 3 67 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 18 ] - - - - - - E 68 67 3 -1 0 0 0 0 0 [ BEGR 19 ] - - - - - - S 69 3 1 70 3 0 0 49 69 -8.044 -0.019 -6.698 IL 70 70 2 70 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 22 - A - - - ML 71 70 2 73 3 1 1 49 68 -8.044 -0.019 -6.698 1.751 -2.532 -2.148 -2.091 D 72 70 2 73 3 0 0 48 67 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 23 - A - - - ML 74 73 3 76 3 1 1 48 67 -8.044 -0.019 -6.698 1.751 -2.532 -2.148 -2.091 D 75 73 3 76 3 0 0 47 66 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 24 - C - - - ML 77 76 3 79 3 1 1 47 66 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 78 76 3 79 3 0 0 46 65 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 25 - C - - - ML 80 79 3 82 3 1 1 46 65 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 81 79 3 82 3 0 0 45 64 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 26 - C - - - ML 83 82 3 85 3 1 1 45 64 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 84 82 3 85 3 0 0 43 63 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - C - - - ML 86 85 3 88 3 1 1 44 63 -8.044 -0.019 -6.698 -1.007 1.121 -1.831 0.066 D 87 85 3 88 3 0 0 42 62 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 28 - C - - - ML 89 88 3 91 3 1 1 43 62 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 90 88 3 91 3 0 0 41 61 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - C - - - ML 92 91 3 94 3 1 1 42 61 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 93 91 3 94 3 0 0 40 60 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - C - - - ML 95 94 3 97 5 1 1 40 60 -7.163 -0.037 -6.978 -7.190 -8.082 -1.935 1.673 -2.764 -1.310 D 96 94 3 97 5 0 0 39 58 -4.959 -0.803 -4.221 -2.596 -2.508 IL 97 97 3 97 5 1 1 41 60 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 31 55 G C - - MP 98 97 3 102 6 2 2 39 59 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -4.901 -3.170 -5.016 0.093 -5.456 -4.755 -0.781 -5.269 -4.430 3.674 -4.756 -0.876 -1.162 -4.572 -2.827 -3.891 ML 99 97 3 102 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 100 97 3 102 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 101 97 3 102 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 102 102 5 102 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 103 103 6 103 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 32 54 C G - - MP 104 103 6 108 6 2 2 37 57 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -4.726 -4.647 -4.385 -0.863 -3.066 -4.774 3.602 -3.893 -4.441 -0.647 -4.683 -2.596 0.430 -4.783 -0.777 -3.275 ML 105 103 6 108 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 6 108 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 6 108 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 33 53 U G - - MP 110 109 6 114 6 2 2 35 55 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -4.257 -4.185 -3.921 -0.503 -2.628 -4.319 1.662 -3.417 -3.963 -0.338 -4.238 -2.180 0.790 -4.327 3.105 -2.826 ML 111 109 6 114 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 34 52 G U - - MP 116 115 6 120 6 2 2 33 53 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -3.719 -2.458 -3.894 1.068 -4.695 -5.422 -0.281 -3.904 -3.530 1.217 -4.057 3.184 -0.637 -4.606 -2.223 -2.574 ML 117 115 6 120 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 35 51 G C - - MP 122 121 6 126 6 2 2 31 51 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -4.901 -3.170 -5.016 0.093 -5.456 -4.755 -0.781 -5.269 -4.430 3.674 -4.756 -0.876 -1.162 -4.572 -2.827 -3.891 ML 123 121 6 126 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 36 50 u a - - MP 128 127 6 132 4 2 2 29 49 -7.033 -7.240 -0.050 -5.654 -3.235 -3.284 -3.237 0.222 0.281 -3.908 1.728 -3.091 -3.262 0.353 -3.717 -1.473 2.772 -3.455 -0.230 -2.229 ML 129 127 6 132 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 131 127 6 132 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 132 132 5 132 4 1 1 31 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 133 133 6 133 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - A - - - ML 134 133 6 136 3 1 1 27 46 -8.044 -0.019 -6.698 1.751 -2.532 -2.148 -2.091 D 135 133 6 136 3 0 0 26 45 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - U - - - ML 137 136 3 139 3 1 1 26 45 -8.044 -0.019 -6.698 -1.634 -1.604 -2.375 1.658 D 138 136 3 139 3 0 0 25 44 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - C - - - ML 140 139 3 142 3 1 1 25 43 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 141 139 3 142 3 0 0 24 43 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - U - - - ML 143 142 3 145 3 1 1 23 42 -8.044 -0.019 -6.698 -1.634 -1.604 -2.375 1.658 D 144 142 3 145 3 0 0 22 41 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - C - - - ML 146 145 3 148 3 1 1 22 41 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 147 145 3 148 3 0 0 21 40 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - C - - - ML 149 148 3 151 3 1 1 21 40 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 150 148 3 151 3 0 0 20 39 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - C - - - ML 152 151 3 154 3 1 1 20 39 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 153 151 3 154 3 0 0 19 38 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - C - - - ML 155 154 3 157 3 1 1 19 37 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 156 154 3 157 3 0 0 18 37 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - C - - - ML 158 157 3 160 3 1 1 17 36 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 159 157 3 160 3 0 0 17 36 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - U - - - ML 161 160 3 163 3 1 1 16 35 -8.044 -0.019 -6.698 -1.634 -1.604 -2.375 1.658 D 162 160 3 163 3 0 0 16 34 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - C - - - ML 164 163 3 166 3 1 1 15 33 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 165 163 3 166 3 0 0 15 33 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - A - - - ML 167 166 3 169 3 1 1 13 31 -8.044 -0.019 -6.698 1.751 -2.532 -2.148 -2.091 D 168 166 3 169 3 0 0 13 32 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - G - - - ML 170 169 3 172 2 1 1 1 1 * 0.000 -1.750 -2.995 1.759 -2.383 D 171 169 3 172 2 0 0 0 0 * 0.000 IL 172 172 3 172 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 173 172 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME BLV_package ACC RF00192 DESC Bovine leukaemia virus RNA packaging signal LENG 55 MAXL 136 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:23:43 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 5 EFFN 2.583008 CKSUM 2081699073 STATS LOCAL MSV -8.4954 0.71929 STATS LOCAL VITERBI -8.5173 0.71929 STATS LOCAL FORWARD -3.1795 0.71929 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.59998 0.95583 1.68672 1.47631 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 0.00000 * 1 0.29691 2.91719 1.93334 2.84495 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 2 3.10634 2.00102 2.86702 0.27027 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 3 1.97258 3.01609 0.28016 2.87798 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 4 2.22055 2.95027 0.24925 2.81775 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 5 2.65823 3.35449 0.15333 3.29267 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 6 0.29811 2.91180 1.93225 2.83735 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 7 0.13706 3.35285 3.06592 3.06850 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 8 0.13706 3.35285 3.06592 3.06850 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 9 2.13050 1.60464 2.65496 0.49436 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 10 2.71697 2.66285 3.23849 0.19243 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 11 2.98404 0.17566 3.56013 2.50015 11 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 12 2.98404 0.17566 3.56013 2.50015 12 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 13 2.98404 0.17566 3.56013 2.50015 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 14 2.98404 0.17566 3.56013 2.50015 14 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 15 2.20515 0.55426 2.78996 1.37103 15 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 16 3.06045 2.23932 2.72182 0.24738 16 U - - > 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 17 3.48620 0.18240 3.18984 2.35450 17 C - - > 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 18 3.04071 0.38262 2.76610 1.57397 18 C - - > 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 19 3.07952 2.00224 2.80885 0.27613 19 U - - > 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 20 0.30804 3.04649 1.83692 2.84252 20 A - - > 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 21 3.04875 2.23773 2.71716 0.24869 21 U - - > 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 22 0.13706 3.35285 3.06592 3.06850 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 23 0.13706 3.35285 3.06592 3.06850 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 24 2.98404 0.17566 3.56013 2.50015 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 25 2.98404 0.17566 3.56013 2.50015 25 C - - - 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 26 2.98404 0.17566 3.56013 2.50015 26 C - - - 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 27 2.20515 0.55426 2.78996 1.37103 27 C - - - 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 28 2.98404 0.17566 3.56013 2.50015 28 C - - - 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 29 2.98404 0.17566 3.56013 2.50015 29 C - - - 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 30 2.98404 0.17566 3.56013 2.50015 30 C - - - 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 31 2.66172 3.35885 0.15261 3.29868 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 32 3.31719 0.21324 3.10343 2.19921 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 33 3.04441 1.63278 2.84838 0.35803 33 U - - < 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 34 1.97196 3.01473 0.28049 2.87622 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 35 2.65800 3.35421 0.15338 3.29229 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 36 2.48009 1.22786 2.29748 0.64849 36 U - - < 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 37 0.13706 3.35285 3.06592 3.06850 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 38 2.71697 2.66285 3.23849 0.19243 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 39 2.98404 0.17566 3.56013 2.50015 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 40 2.71697 2.66285 3.23849 0.19243 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 41 2.98404 0.17566 3.56013 2.50015 41 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 42 2.98404 0.17566 3.56013 2.50015 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 43 2.98404 0.17566 3.56013 2.50015 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 44 2.98404 0.17566 3.56013 2.50015 44 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 45 2.98404 0.17566 3.56013 2.50015 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 46 2.71697 2.66285 3.23849 0.19243 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 47 2.98404 0.17566 3.56013 2.50015 47 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 48 0.13706 3.35285 3.06592 3.06850 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 49 2.81621 3.70946 0.12986 3.28445 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 50 0.58650 2.46422 1.36759 2.26401 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 51 3.48741 0.18231 3.19039 2.35473 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 52 3.08224 2.00242 2.81004 0.27584 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 53 2.18745 3.02598 0.25185 2.78184 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 54 2.47577 3.26684 0.18467 3.07062 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03890 3.95929 3.95929 1.46634 0.26236 1.09861 0.40547 55 3.48127 0.18280 3.18761 2.35356 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.01964 3.94003 * 1.46634 0.26236 0.00000 * //