# STOCKHOLM 1.0
#=GF ID SNORD101
#=GF AC RF00186
#=GF DE Small nucleolar RNA SNORD101
#=GF AU Moxon SJ; 0000-0003-4644-1816
#=GF GA 47.0
#=GF NC 46.7
#=GF TC 47.0
#=GF PI U101
#=GF SE PMID:14602913, INFERNAL
#=GF SS Predicted; PFOLD
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 20.00 -Z 2958934 CM SEQDB
#=GF CL CL00074
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Mus_musculus300844;
#=GF DR snoopy; Gallus_gallus300077;
#=GF RN [1]
#=GF RM 14602913
#=GF RT Identification of 13 novel human modification guide RNAs.
#=GF RA Vitali P, Royo H, Seitz H, Bachellerie JP, Huttenhofer A, Cavaille J
#=GF RL Nucleic Acids Res 2003;31:6543-6551.
#=GF CC snoRNA U101 is a member of the C/D class of snoRNA which contain the C
#=GF CC (UGAUGA) and D (CUGA) box motifs and guide the 2'-O-methylation of rRNA
#=GF CC and snRNAs. The precise target of this family is unknown [1].
#=GF WK Small_nucleolar_RNA_SNORD101
#=GF SQ 26

AB061840.1/1853-1925       GU-UUGAAUGAUGACUU---U---A-A-U----UGUCGGAUACCCCUUCACUCC-UUUUAUGAGUGAA-ACAU-A-AGAGUCUGACAAAC
AK096147.1/739-811         GU-UUGAAUGAUGACUU---U---A-A-U----UGUCGGAUACCCCUUCACUCC-UUUUAUGAGUGAA-ACAU-A-AGAGUCUGACAAAC
AL137783.12/17082-17154    GU-UUGAAUGAUGACUU---U---A-A-U----UGUCGGAUACCCCUUCACUCC-UUUUAUGAGUGAA-ACAU-A-AGAGUCUGACAAAC
ABDC01238297.1/2049-2121   GU-UUGAAUGAUGACUU---A---A-A-U----UGUCGGAUACCCCUUCACUCC-CCUUAUGAGUGAA-ACAU-A-ACAGUCUGACAAAC
AANG01372476.1/5797-5869   GU-UUGAAUGAUGACUU---A---A-G-U----UGUCGGAUACCCCUUCACUCU-UUCUGUGAGUGAA-ACCU-A-ACAGUCUGACAAAC
AAFC03068109.1/5105-5177   GU-UUGAAUGAUGACUU---A---A-G-U----UGUCGGAUACCCCUUCACUCC-UUCUAUGAGUGAA-AUCG-C-AUAGUCUGACAAAC
AAFR03001093.1/91076-91005 GU-UUGAAUGAUGACUU---G---A---U----UGUCGGAUACCCCUACACUCC-AUUUAUGAGUGAU-AAAA-A-AUGGUCUGACAAAC
AAPY01004162.1/2343-2413   GU-UUGAAUGAUGACUU---G---A-A-U----UGUCGGAUACCCCUUCACUCC-CUC--UGAGUGAA-CAAU-C-ACAGUCUGACAAAC
CAAA01055927.1/1000-927    GU-UUGCAUGAUGACUU---G---A-A-U----UGUCGGAUACCCCUUCACCCC-GUUCAUGGGUGAG-AAAC-AGCUAGUCUGACAAAC
AAIY01528082.1/1105-1176   GU-UUGAAUGAUGACUU---G---U-G-U----UGUCGGAUACCCCUUCACUC---UCCAUGAGUGAG-ACAA-AUAGAGUCUGACAAAC
AALT01050051.1/907-983     GU-UUGAAUGAUGACUUACAU---U-G-U----UGUCGGAUACCCCUUCACUCC-GUUCAUGAGUGAA-ACCUGU-AUAGUCUGACAAAC
AAQQ01497646.1/621-549     AU-UUGAAUGAUGAC-U---U---A-A-G----UGUCGGAUACCCCUUCACUCC-UUUCAUGGAUGAAAACAU-U-ACAGUCUGACAAAC
AAHX01002042.1/8818-8891   GU-UUGAGUGAUGACUU---G---U-A-U----UGUCGGAUACCCCUUCACCCC-GUUCAUGGGUGAG-AUUC-AGCUAGUCUGACAAAC
AANN01343681.1/2586-2659   GU-UUGAGUGAUGACUU---U---UUA-U----UGUCGGAUACCCCUUCACUCC-UUCC-UGAGUGAA-ACAUGC-ACAGUCUGACAAAC
AAVX01455959.1/497-568     GU-UGAAAUGAUGAAUU---A---A-U-U----UGUCGGAUACCCCUUCACUCU-CCUGAUGAGUGAG-UCAU-U-UUGUUCUGA-CAAC
BX933037.2/152-224         GU-UUGAGUGAUGACUU---CACAA-A-U----UGUCGGAUACCCCUUCACUCC-UUUUGAGUGAGAA-CUGU-G----GUCUGACAAAC
AAYZ01211852.1/1606-1677   GU-UGGGAUGAUGACUG---G---A-A-G----UGUCGGAUACCCCUUCACUCC--UGCAUGAGUGAC-AGUC-U-GCAGUCUGACGAAC
AAPN01046280.1/1549-1478   GACUUGAAUGAUGACUA---G---A---U----UGUCGGAUACCCCUACACUCCAACGUAUGAGUGAA-AAAA-A-A--GUCUGACAAUC
AAWR02015249.1/9263-9335   GU-UUGGAUGAUGACUU---A---A-A-U----UGUCGGAUACCCCUUCACUCC-CUUUAUGAGUGAA-ACUU-A-AUAGUCUGACAAAC
AAKN02045639.1/11468-11542 GU-UUGAAUGAUGACUU---A---A-AGU----UGUCGGAUACCCCUUCACUCC-UAUCAUGAGUGAA-ACAUGA-AUAGUCUGACAAAC
AAGV020900704.1/1092-1163  GU-UUGUAUGAUGAC-U---U---A-U-G----UGUCGGAUACCCCUUCACUCU-UUCAAUGAGUGAA-ACAU-U-GAAGUCUGACAAAC
AAGU03000606.1/4988-4916   GU-UUGAAUGAUGACUU---G---G-UGU----UGUCGGAUACCCCUUCACUCG-UUUUAUGAGUGAA-ACAU---ACAGUCUGACAAAC
AAGW02028778.1/12639-12568 GU-UUGAAUGAUGACUG---A---A-A-U----UGUCGGAUACCCCUUCACUCC-UUCC-UGAGUGAC-ACAC-U-GCAGUCUGACAAAC
AAQR03075875.1/6095-6023   GU-UUGAAUGAUGACUU---C---A-G-U----UGUCGGAUACCCCUUCACUCC-UUCUAUGAGUGAA-ACAU-A-ACAGUCUGACAAAC
AAEX03000181.1/84123-84196 GU-UUGAAUGAUGACUU---A---A-A-U----UGUCGGAUACCCCUUCACUCU-CUCGAUGAGUGAA-ACAUGA-ACAGUCUGACAAAC
AAWZ02013261.1/63825-63750 GU-UUGAAUGAUGAUUA---U---A-U-UAAAAUGUCGGAUACCCCUUCACUCU-AAUUAUGAGUGAG-A-AU-A-AUAGUCUGACAAAC
#=GC SS_cons               <<.<<<___________..._..._._._...._____________________._____________.____._._________>>>>>
#=GC RF                    GU.UuGAAUGAUGACUU...a...A.a.U....UGUCGGAUACCCCUUCACUCc.uUuuAUGAGUGAa.Acau.a.auAGUCUGACaAAC
//
