# STOCKHOLM 1.0
#=GF ID mir-24
#=GF AC RF00178
#=GF DE mir-24 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 50.0
#=GF NC 49.9
#=GF TC 50.0
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR MIR; MI0000080;
#=GF DR MIR; MI0000081;
#=GF DR MIR; MI0000231;
#=GF DR MIR; MI0000572;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF DR GO; 0016442; RISC complex;
#=GF RN [1]
#=GF RM 11679670
#=GF RT Identification of novel genes coding for small expressed RNAs.
#=GF RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T
#=GF RL Science 2001;294:853-858.
#=GF RN [2]
#=GF RM 11779458
#=GF RT microRNAs: tiny regulators with great potential.
#=GF RA Ambros V
#=GF RL Cell 2001;107:823-826.
#=GF RN [3]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF CC This family represents the microRNA (miRNA) mir-24 family. miRNAs are
#=GF CC transcribed as ~70nt precursors (modelled here) and subsequently processed
#=GF CC by the Dicer enzyme to give a ~22nt product. In this case the mature
#=GF CC sequence comes from the 3' arm of the precursor. The extents of the
#=GF CC hairpin precursors are not generally known and are estimated based on
#=GF CC hairpin prediction. The products are thought to have regulatory roles
#=GF CC through complementarity to mRNA. The involvement of Dicer in miRNA
#=GF CC processing suggests a relationship with the phenomenon of RNA
#=GF CC interference. miRNAs are numbered based on the sequence of the mature RNA.
#=GF CC miR-24 has been identified in human and mouse [1]. Family represents the
#=GF CC microRNA (miRNA) precursor mir-24 imported from miRBase [3].
#=GF WK mir-24_microRNA_precursor_family
#=GF SQ 63

URS000075EAAF_10116/18-87  GCCUCCUGUGCCUACUGAGCUGAAA--CAGUUGAUUC----CAGUGCACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS000075D181_10090/18-87  GCCUCCCGUGCCUACUGAGCUGAAA--CAGUUGAUUC----CAGUGCACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS0000AAB710_7998/1-57    --------UGCCUACUGAGCUGAUAA-CAGUUGAUGU---AUUUAGCACUGGCUCAGUUCAGCAGGAAC-------
URS0000D4FCF8_8030/1-60    --------UGCCUACUGAGCUGAUAA-CAGUUUGAUAU--AAUGAGCACUGGCUCAGUUCAGCAGAAACCG-----
URS00000FFC8B_9606/5-73    GCCUCCCGUGCCUACUGAGCUGAAACACAGUUGGUUU----GUGUACACUGGCUCAGUUCAGCAGGAACAGGG---
URS00000FFC8B_9593/5-73    GCCUCCCGUGCCUACUGAGCUGAAACACAGUUGGUUU----GUGUACACUGGCUCAGUUCAGCAGGAACAGGG---
URS00000FFC8B_9597/5-73    GCCUCCCGUGCCUACUGAGCUGAAACACAGUUGGUUU----GUGUACACUGGCUCAGUUCAGCAGGAACAGGG---
URS00000FFC8B_9600/5-73    GCCUCCCGUGCCUACUGAGCUGAAACACAGUUGGUUU----GUGUACACUGGCUCAGUUCAGCAGGAACAGGG---
URS00000FFC8B_9598/5-73    GCCUCCCGUGCCUACUGAGCUGAAACACAGUUGGUUU----GUGUACACUGGCUCAGUUCAGCAGGAACAGGG---
URS000002D1E1_9544/5-73    GCCUCCCGUGCCUACUGAGCUGAAACACAGUUGGUUU----GUGCACACUGGCUCAGUUCAGCAGGAACAGGA---
URS000002D1E1_9545/5-73    GCCUCCCGUGCCUACUGAGCUGAAACACAGUUGGUUU----GUGCACACUGGCUCAGUUCAGCAGGAACAGGA---
URS000075E28B_9913/5-72    GCCUCCCGUGCCUACUGAGCUGAAACACAGUUGAUUU----GUGCACACUGGCUCAGUUCAGCAGGAACAGG----
URS000075A200_9823/5-72    GCCUCCCGUGCCUACUGAGCUGAAACACAGUUGAUUU----GUGCAGACUGGCUCAGUUCAGCAGGAACAGG----
URS00007E3AB3_9615/1-62    ------CGUGCCUACUGAGCUGAAACACAGUUGAUUU----GUGCAGACUGGCUCAGUUCAGCAGGAACAGG----
URS0000663FA6_9796/1-68    --CUCCCGUGCCUACUGAGCUGAAACACAGUUGGUUU----GUGCAGACUGGCUCAGUUCAGCAGGAACAGGAG--
URS000075B63A_13616/1-72   GCCUCCUGUGCCUACUGAGCUGAAACACAGUUGCUUU----GGAUAAACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS000075ADE8_9305/56-127  GCCUCCUGUGCCUACUGAGCUGAAACACAGUUGCUUU----GGAUAAACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS00007E4A16_9258/1-60    -------GUGCCUACUGAGCUGAAACGCAGUUGCUUU----GCUUAAACUGGCUCAGUUCAGCAGGAACAG-----
URS00007E34F8_28377/12-83  GCCUUCCGUGCCUACUGAGCUGAUACUCAGUUGCUUU----AGAUAAACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS0000D51B75_8665/5-76    GCCUCCCGUGCCUACUGAGCUGAUACUCAGUUGUUUU----GAAAAAACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS00006A7157_9031/1-68    --CUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUGAU---UUUACAUACUGGCUCAGUUCAGCAGGAACAGGAG--
URS0000D522CC_8665/3-74    UCCUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUGAU---UUUAUAUACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS000075AB82_59729/56-127 UCCUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUGAU---UUUACACACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS00003A9237_9606/1-68    --CUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUCAU---UUUACACACUGGCUCAGUUCAGCAGGAACAGGAG--
URS00003A9237_9545/1-68    --CUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUCAU---UUUACACACUGGCUCAGUUCAGCAGGAACAGGAG--
URS00007E4816_28377/12-83  UCCUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUGAU---UUUACACACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS00003A9237_9597/1-68    --CUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUCAU---UUUACACACUGGCUCAGUUCAGCAGGAACAGGAG--
URS00003A9237_9796/1-68    --CUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUCAU---UUUACACACUGGCUCAGUUCAGCAGGAACAGGAG--
URS000075E41D_13616/1-57   ------GGUGCCUACUGAGCUGAUA-ACAGUUCUGAU---UUUACACACUGGCUCAGUUCAGCAGGA---------
URS000075D52E_9305/56-127  CCCUCCGGUGCCUACUGAGCUGAUA-ACAGUUCUGAU---UUUACACACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS000075E7EF_9823/7-78    CCCUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUCAU---UUUACACACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS000075E7EF_9925/7-78    CCCUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUCAU---UUUACACACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS000075D56B_9598/1-67    ---UCCGGUGCCUACUGAGCUGAUA-UCAGUUCUCAU---UUUACACACUGGCUCAGUUCAGCAGGAACAGGAG--
URS00003A9237_9544/1-68    --CUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUCAU---UUUACACACUGGCUCAGUUCAGCAGGAACAGGAG--
URS00003A9237_9913/1-68    --CUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUCAU---UUUACACACUGGCUCAGUUCAGCAGGAACAGGAG--
URS00003A9237_9600/1-68    --CUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUCAU---UUUACACACUGGCUCAGUUCAGCAGGAACAGGAG--
URS00007E438E_9615/1-62    ------GGUGCCUACUGAGCUGAUA-UCAGUUCUCAU---UGUACACACUGGCUCAGUUCAGCAGGAACAGG----
URS000063243F_10116/1-68   --CUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUCAU---UUCACACACUGGCUCAGUUCAGCAGGAACAGGAG--
URS000063243F_10090/1-68   --CUCCGGUGCCUACUGAGCUGAUA-UCAGUUCUCAU---UUCACACACUGGCUCAGUUCAGCAGGAACAGGAG--
URS000075F11D_9258/8-78    CCCUCCAGUGCCUACUGAGCUGAUA-UCAGUUCUCGU----UGACCCACUGGCUCAGUUCAGCAGGAACAGGAGUG
URS000075B33D_8364/1-67    --CUCUUGUGCCUACUGAACUGAUA-UCAGUUCUAUU----UCACACACUGGCUCAGUUCAGCAGGAACAGGAG--
URS000075A21E_7955/37-106  GCCUCCCGUGCCUACUGAGCUGAUU-ACAGUACUGU-----GCAAACACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS0000D4FA6E_7998/1-58    --------UGCCUACUGAGCUGAUU-ACAGUACUGU-----GCAAACACUGGCUCAGUUCAGCAGGAACAGG----
URS000075C29A_7955/7-77    GUCUCCUGUGCCUGCUGUGCUGAUAAUCAGUGGACG-----GCUGUGACUGGCUCAGUUCAGCAGGAACAGGGGCC
URS0000D56230_7998/1-59    --------UGCCUGCUGUGCUGAUAAUCAGUGGACG-----GCUGUGACUGGCUCAGUUCAGCAGGAACAGG----
URS0000D5458B_7962/4-74    GUCUCCUGUGCCUGCUGUGCUGAUAAUCAGUGGAUG-----GCUGUAGCUGGCUCAGUUCAGCAGGAACAGGGGUC
URS0000759DBD_31033/7-77   GUCUCCUGUGCCUGCUGUGCUGAUAAUCAGUGUGUG-----ACGUUGGCUGGCUCAGUUCAGCAGGAACAGGGGAC
URS0000A93AC0_99883/7-77   GUCUCCUGUGCCUGCUGUGCUGAUAAUCAGUGUGUG-----ACGUUGGCUGGCUCAGUUCAGCAGGAACAGGGGAC
URS000075A3AA_8090/11-81   GUCUCCUGUGCCUGCUGUGCUGAUAAUCAGUGUGUG-----ACGUCGGCUGGCUCAGUUCAGCAGGAACAGGGGAC
URS0000D55123_8030/1-56    --------UGCCUGCUGUGCUGAUAAUCAGUGUGUG-----AGGUUAGCUGGCUCAGUUCAGCAGGAAC-------
URS000075A4F5_8364/1-68    --CUCCCGUACCUACUGGGCUGAUAAUCAGUGGUUAU---AUCUUCCCCUGGCUCAGUUCAGCAGGA-CAGGAG--
URS0000A86823_7757/12-84   AUCUUCUGUGCCUACUGUUCUGACA-UCAGUCGUCUAU--AAAAAGCACUGGCUCAGUUCAGCAGGAACAGAAGUC
URS000075D330_7955/6-75    AGCUCCGGUGCCUUCUGAGCUGAUA-UCAGUUGUAG-----UAAAUCACUGGCUCAGUUCAGCAGGAACAGGAGUG
URS0000D53C09_7998/1-60    ------GGUGCCUUCUGAGCUGAUA-UCAGUUGUAG-----UAAAUCACUGGCUCAGUUCAGCAGGAACAGG----
URS0000A9BC6E_99883/1-70   -CUUCCUGUGCCUACUGAGCUGAUAUGCAGUUGUAC-----AGAACCACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS000075EAD1_8090/16-86   GAUUCCUGUGCCUACUGAGCUGAUUAUCAGUCCUAU-----AGAACCACUGGCUCAGUUCAGCAGGAACAGGAGUC
URS000075E900_8090/18-92   ACCUCCAGUGCCUACUGAGCUGAUA-ACAGUUUUACCUGAAACAAGUACUGGCUCAGUUCAGCAGGAACCGGAGUU
URS0000D56557_8030/1-55    --------UGCCUACUGAGCUGAUA-ACAGUACUAC-----UGAAUGACUGGCUCAGUUCAGCAGGAAC-------
URS0000D50288_8030/1-57    --------UGCCUACUGAACUGGUA-UCAGUUUGAAC---UCUGAGUACUGGCUCAGUUCAGCAGGAAC-------
URS0000D51E71_8030/1-57    --------UGCCUACUGAACUGGUA-UCAGUGUGAAC---UCUGAGUACUGGCUCAGUUCAGCAGGAAC-------
URS000075B6FA_7955/11-82   CCCACUUGUGCCUGCUAAACUGGUA-UCAGUAUGUUG---AUUUAGUGCUGGCUCAGUUCAGCAGGAACAGGUGUG
URS000075A312_31033/9-79   CCCUCCUGUGCCUACUGAACUGGUA-UCAGUGUCAUA---CUGGAAAACUGGCUCAGUUCAGCAGGAACAGGAGU-
URS000075E9F3_8090/16-87   CCCUCCCGUGCCUACUGAACUGGUA-UCAGUGUUUGA---CCUGAAAACUGGCUCAGUUCAGCAGGAACAGGAGUG
#=GC SS_cons               ::<<<<-<<-<<<-<<<<<<<<<--.<<<<<______....______>>>>>->>>>>>>>>->>>->>->>>>..
#=GC RF                    gcCuCCuGUGCCUACUGagCUGAUA.cCAGuuuuuuu....uuaaacaCUGgCUCAGuuCAGCAGGAACAGGaG..
//
