INFERNAL1/a [1.1.4 | Dec 2020] NAME Hairpin ACC RF00173 DESC Hairpin ribozyme STATES 160 NODES 46 CLEN 52 W 67 ALPH RNA RF no CONS yes MAP yes DATE Fri Jun 20 11:06:30 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 3.071289 CKSUM 1199589330 NULL 0.000 0.000 0.000 0.000 GA 65.00 TC 73.30 NC 38.10 EFP7GF -12.8789 0.71926 ECMLC 0.54573 -10.32097 1.45439 1600000 741356 0.001619 ECMGC 0.40872 -19.33976 -4.19688 1600000 194989 0.002051 ECMLI 0.55144 -8.43568 2.47695 1600000 492714 0.002435 ECMGI 0.43415 -15.26942 -1.82964 1600000 136814 0.002924 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 67 87 -7.353 -7.560 -0.040 -5.974 IL 1 1 2 1 4 1 13 71 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - c - - - ML 3 2 3 5 3 1 13 67 87 -8.344 -0.016 -6.998 0.393 0.708 -1.484 -0.523 D 4 2 3 5 3 0 7 66 85 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 12 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 13 66 86 -8.344 -0.016 -6.998 1.842 -3.139 -2.697 -2.760 D 7 5 3 8 3 0 6 65 84 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 11 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 12 65 84 -8.344 -0.016 -6.998 1.842 -3.139 -2.697 -2.760 D 10 8 3 11 3 0 5 64 83 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 11 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 11 64 83 -8.344 -0.016 -6.998 -2.668 1.802 -3.492 -1.904 D 13 11 3 14 3 0 4 63 82 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 10 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 10 63 82 -8.344 -0.016 -6.998 1.842 -3.139 -2.697 -2.760 D 16 14 3 17 3 0 4 62 81 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 9 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 9 62 81 -8.344 -0.016 -6.998 -2.363 -3.688 1.852 -3.070 D 19 17 3 20 3 0 3 60 80 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 8 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - c - - - ML 21 20 3 23 3 1 9 61 80 -8.344 -0.016 -6.998 0.393 0.708 -1.484 -0.523 D 22 20 3 23 3 0 2 59 79 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 7 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 8 60 79 -8.344 -0.016 -6.998 -2.363 -3.688 1.852 -3.070 D 25 23 3 26 3 0 2 58 78 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 6 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 7 59 78 -8.344 -0.016 -6.998 1.842 -3.139 -2.697 -2.760 D 28 26 3 29 3 0 1 57 77 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 6 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 6 58 77 -8.344 -0.016 -6.998 1.842 -3.139 -2.697 -2.760 D 31 29 3 32 3 0 0 56 76 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 5 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 6 57 76 -8.344 -0.016 -6.998 -2.363 -3.688 1.852 -3.070 D 34 32 3 35 3 0 0 55 75 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 4 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - c - - - ML 36 35 3 38 3 1 5 55 75 -8.344 -0.016 -6.998 -1.094 0.884 -1.933 0.510 D 37 35 3 38 3 0 0 54 74 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 3 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - g - - - ML 39 38 3 41 3 1 4 54 74 -8.344 -0.016 -6.998 -0.634 -0.069 0.846 -0.726 D 40 38 3 41 3 0 0 53 73 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 3 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - a - - - ML 42 41 3 44 3 1 4 53 73 -8.712 -0.015 -7.030 0.472 0.011 -0.261 -0.376 D 43 41 3 44 3 0 0 52 71 -5.620 -0.734 -1.403 IL 44 44 3 44 3 1 2 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 52 - A - - MR 45 44 3 47 5 1 3 52 72 -7.430 -0.031 -7.245 -7.458 -8.349 1.324 -1.867 -0.266 -1.357 D 46 44 3 47 5 0 0 51 70 -5.352 -0.707 -2.978 -4.409 -2.404 IR 47 47 3 47 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 51 g c - - MP 48 47 3 52 6 2 4 51 71 -9.276 -9.215 -0.019 -7.992 -8.271 -8.666 -3.815 -2.689 -3.837 2.551 -4.513 -4.806 -0.028 -4.139 -3.825 2.697 -4.292 -0.246 -0.310 -4.030 -1.984 -2.704 ML 49 47 3 52 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 50 C G - - MP 54 53 6 58 6 2 4 49 69 -9.276 -9.215 -0.019 -7.992 -8.271 -8.666 -3.791 -3.563 -3.738 1.410 -2.836 -4.431 3.007 -3.459 -3.716 0.465 -4.154 -1.399 0.971 -3.991 -0.485 -2.588 ML 55 53 6 58 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 49 C G - - MP 60 59 6 64 6 2 4 47 67 -9.276 -9.215 -0.019 -7.992 -8.271 -8.666 -5.395 -5.372 -4.934 -1.549 -3.493 -5.234 3.746 -4.388 -5.025 -1.402 -5.181 -3.344 -0.082 -5.405 -1.234 -3.841 ML 61 59 6 64 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 18 48 a u - - MP 66 65 6 70 6 2 3 45 65 -9.276 -9.215 -0.019 -7.992 -8.271 -8.666 -3.806 -2.724 -3.867 2.951 -4.531 -5.083 -0.122 -4.083 -3.776 2.246 -4.297 -0.228 -0.403 -4.227 -2.062 -2.694 ML 67 65 6 70 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 19 47 G C - - MP 72 71 6 76 4 2 2 43 62 -7.353 -7.560 -0.040 -5.974 -5.479 -3.454 -5.688 -0.315 -6.260 -4.969 -1.442 -5.954 -4.776 3.774 -5.067 -1.191 -1.810 -4.941 -3.525 -4.554 ML 73 71 6 76 4 1 1 44 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 44 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 43 62 -4.568 -4.250 -2.265 -0.520 IL 76 76 5 76 4 1 1 45 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - a - - - ML 78 77 6 80 3 1 1 41 60 -8.344 -0.016 -6.998 0.469 -0.425 0.209 -0.482 D 79 77 6 80 3 0 0 40 59 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - G - - - ML 81 80 3 83 3 1 1 40 59 -8.344 -0.016 -6.998 -2.363 -3.688 1.852 -3.070 D 82 80 3 83 3 0 0 39 58 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - A - - - ML 84 83 3 86 3 1 1 39 58 -8.344 -0.016 -6.998 1.842 -3.139 -2.697 -2.760 D 85 83 3 86 3 0 0 38 57 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - A - - - ML 87 86 3 89 3 1 1 38 56 -8.344 -0.016 -6.998 1.842 -3.139 -2.697 -2.760 D 88 86 3 89 3 0 0 37 56 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - A - - - ML 90 89 3 92 3 1 1 37 55 -8.344 -0.016 -6.998 1.842 -3.139 -2.697 -2.760 D 91 89 3 92 3 0 0 35 54 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - C - - - ML 93 92 3 95 3 1 1 35 54 -8.344 -0.016 -6.998 -2.668 1.802 -3.492 -1.904 D 94 92 3 95 3 0 0 34 53 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 26 - A - - - ML 96 95 3 98 3 1 1 34 53 -8.712 -0.015 -7.030 1.842 -3.139 -2.697 -2.760 D 97 95 3 98 3 0 0 33 52 -5.620 -0.734 -1.403 IL 98 98 3 98 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 46 - c - - MR 99 98 3 101 3 1 1 33 52 -8.712 -0.015 -7.030 -1.088 0.867 -1.926 0.529 D 100 98 3 101 3 0 0 32 50 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 45 - A - - MR 102 101 3 104 3 1 1 32 51 -8.712 -0.015 -7.030 1.842 -3.139 -2.697 -2.760 D 103 101 3 104 3 0 0 31 49 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 44 - U - - MR 105 104 3 107 3 1 1 31 50 -8.712 -0.015 -7.030 -2.209 -2.083 -2.970 1.774 D 106 104 3 107 3 0 0 30 48 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 43 - U - - MR 108 107 3 110 3 1 1 30 49 -8.712 -0.015 -7.030 -2.209 -2.083 -2.970 1.774 D 109 107 3 110 3 0 0 29 47 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 42 - A - - MR 111 110 3 113 3 1 1 29 48 -8.712 -0.015 -7.030 1.842 -3.139 -2.697 -2.760 D 112 110 3 113 3 0 0 28 46 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 41 - U - - MR 114 113 3 116 3 1 1 28 47 -8.712 -0.015 -7.030 -2.209 -2.083 -2.970 1.774 D 115 113 3 116 3 0 0 27 45 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 40 - A - - MR 117 116 3 119 3 1 1 27 46 -8.712 -0.015 -7.030 1.842 -3.139 -2.697 -2.760 D 118 116 3 119 3 0 0 26 44 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 39 - U - - MR 120 119 3 122 3 1 1 26 45 -8.712 -0.015 -7.030 -2.209 -2.083 -2.970 1.774 D 121 119 3 122 3 0 0 25 44 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 38 - G - - MR 123 122 3 125 5 1 1 25 44 -7.430 -0.031 -7.245 -7.458 -8.349 -2.363 -3.688 1.852 -3.070 D 124 122 3 125 5 0 0 24 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 125 125 3 125 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 27 37 C G - - MP 126 125 3 130 6 2 2 24 43 -9.276 -9.215 -0.019 -7.992 -8.271 -8.666 -5.395 -5.372 -4.934 -1.549 -3.493 -5.234 3.746 -4.388 -5.025 -1.402 -5.181 -3.344 -0.082 -5.405 -1.234 -3.841 ML 127 125 3 130 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 28 36 A U - - MP 132 131 6 136 6 2 2 22 41 -9.276 -9.215 -0.019 -7.992 -8.271 -8.666 -4.518 -3.386 -4.457 3.654 -5.196 -6.352 -0.846 -4.448 -4.349 0.289 -4.931 -0.763 -1.258 -5.397 -2.783 -3.269 ML 133 131 6 136 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 29 35 C G - - MP 138 137 6 142 4 2 2 20 39 -7.353 -7.560 -0.040 -5.974 -5.395 -5.372 -4.934 -1.549 -3.493 -5.234 3.746 -4.388 -5.025 -1.402 -5.181 -3.344 -0.082 -5.405 -1.234 -3.841 ML 139 137 6 142 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 30 - c - - - ML 144 143 6 146 3 1 1 17 36 -8.344 -0.016 -6.998 -0.665 0.697 0.085 -0.541 D 145 143 6 146 3 0 0 17 35 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 31 - u - - - ML 147 146 3 149 3 1 1 16 34 -8.344 -0.016 -6.998 0.339 -1.046 -1.325 0.889 D 148 146 3 149 3 0 0 16 34 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 32 - U - - - ML 150 149 3 152 3 1 1 15 33 -8.344 -0.412 -2.028 -2.209 -2.083 -2.970 1.774 D 151 149 3 152 3 0 0 14 33 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 33 - G - - - ML 153 152 3 155 3 1 1 13 31 -7.953 -0.021 -6.607 -1.557 -2.773 1.718 -2.160 D 154 152 3 155 3 0 0 12 30 -8.121 -3.634 -0.127 IL 155 155 3 155 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 34 - U - - - ML 156 155 3 158 2 1 1 1 1 * 0.000 -1.465 -1.465 -2.198 1.612 D 157 155 3 158 2 0 0 0 0 * 0.000 IL 158 158 3 158 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 159 158 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Hairpin ACC RF00173 DESC Hairpin ribozyme LENG 52 MAXL 128 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jun 20 11:06:30 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED NSEQ 5 EFFN 3.764648 CKSUM 1199589330 STATS LOCAL MSV -7.2489 0.71926 STATS LOCAL VITERBI -8.0972 0.71926 STATS LOCAL FORWARD -3.7369 0.71926 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.12437 1.55465 1.37105 1.56045 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 0.00000 * 1 1.10437 0.84254 2.53418 1.84114 1 c - - : 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 2 0.08365 3.81884 3.49090 3.58194 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 3 0.08365 3.81884 3.49090 3.58194 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 4 3.53701 0.10283 4.09014 2.95871 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 5 0.08365 3.81884 3.49090 3.58194 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 6 3.27051 4.21436 0.07867 3.77710 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 7 1.10437 0.84254 2.53418 1.84114 7 c - - : 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 8 3.27051 4.21436 0.07867 3.77710 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 9 0.08365 3.81884 3.49090 3.58194 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 10 0.08365 3.81884 3.49090 3.58194 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 11 3.27051 4.21436 0.07867 3.77710 11 G - - : 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 12 2.27952 0.72456 2.87796 1.03036 12 c - - : 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 13 1.93986 1.41402 0.73434 2.01524 13 g - - : 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 14 1.04924 1.35295 1.56176 1.70622 14 a - - : 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 15 0.88995 2.83133 0.77254 2.68014 15 g - - < 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 16 1.68495 0.59886 2.28754 1.81037 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 17 3.81721 0.12975 3.65766 2.60501 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 18 0.61318 2.93612 1.07021 2.77473 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 19 2.96754 3.80764 0.10225 3.74801 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 20 1.05460 1.67707 1.21235 1.78827 20 a - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 21 3.27051 4.21436 0.07867 3.77710 21 G - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 22 0.08365 3.81884 3.49090 3.58194 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 23 0.08365 3.81884 3.49090 3.58194 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 24 0.08365 3.81884 3.49090 3.58194 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 25 3.53701 0.10283 4.09014 2.95871 25 C - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 26 0.08365 3.81884 3.49090 3.58194 26 A - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 27 3.81749 0.12973 3.65782 2.60506 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 28 0.16902 3.51971 2.37495 3.41496 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 29 3.81445 0.12991 3.65615 2.60448 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 30 1.96322 0.84075 1.29748 1.86440 30 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 31 1.14303 2.19735 2.39020 0.73723 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 32 3.16620 3.03946 3.70055 0.12187 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.33715 4.20717 1.30449 1.46634 0.26236 1.09861 0.40547 33 2.69438 3.57143 0.14929 3.14695 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04087 3.91088 3.91088 1.46634 0.26236 3.00682 0.05071 34 2.60453 2.56942 3.12172 0.21642 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04087 3.91088 3.91088 1.46634 0.26236 0.10414 2.31367 35 2.88881 3.82475 0.11106 3.58802 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 36 3.64336 2.73722 3.33032 0.13547 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 37 2.89618 3.83672 0.10991 3.60134 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 38 3.27051 4.21436 0.07867 3.77710 38 G - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 39 3.16620 3.03946 3.70055 0.12187 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 40 0.08365 3.81884 3.49090 3.58194 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 41 3.16620 3.03946 3.70055 0.12187 41 U - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 42 0.08365 3.81884 3.49090 3.58194 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 43 3.16620 3.03946 3.70055 0.12187 43 U - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 44 3.16620 3.03946 3.70055 0.12187 44 U - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 45 0.08365 3.81884 3.49090 3.58194 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 46 2.27464 0.73677 2.87196 1.01633 46 c - - - 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 47 3.91695 0.12315 3.65802 2.65665 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 48 3.00001 1.20349 2.73904 0.53540 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 49 2.88945 3.82580 0.11096 3.58918 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 50 2.06268 2.47662 0.54151 1.57507 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 51 2.92390 0.86567 2.64061 0.78925 51 u - - > 1.38629 1.38629 1.38629 1.38629 0.03023 4.20717 4.20717 1.46634 0.26236 1.09861 0.40547 52 0.43075 2.83734 1.56367 2.50070 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.01523 4.19217 * 1.46634 0.26236 0.00000 * //