INFERNAL1/a [1.1.5 | Sep 2023] NAME msr ACC RF00170 DESC Retron msr RNA STATES 211 NODES 56 CLEN 69 W 121 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 1 21:44:16 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF00170/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 3.031738 CKSUM 156557289 NULL 0.000 0.000 0.000 0.000 GA 52.00 TC 58.20 NC 51.70 EFP7GF -9.7568 0.71900 ECMLC 0.60648 -6.11706 3.22287 1600000 346122 0.003467 ECMGC 0.37537 -17.15475 -2.76533 1600000 88681 0.004511 ECMLI 0.55182 -4.30049 5.09937 1600000 214720 0.005589 ECMGI 0.43230 -10.84698 0.97693 1600000 66364 0.006027 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 121 186 -7.341 -7.548 -0.040 -5.962 IL 1 1 2 1 4 1 28 123 189 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 27 122 188 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 27 121 187 -8.332 -0.016 -6.986 0.184 -1.965 1.156 -1.397 D 4 2 3 5 3 0 22 119 185 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 26 121 187 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 26 120 186 -8.701 -0.015 -7.019 -2.641 1.798 -3.465 -1.881 D 7 5 3 8 3 0 21 118 184 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 25 120 186 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 83 - u - - MR 9 8 3 11 5 1 25 119 185 -7.420 -0.031 -7.235 -7.447 -8.339 0.244 -0.122 -0.612 0.313 D 10 8 3 11 5 0 19 117 183 -5.352 -0.707 -2.978 -4.409 -2.404 IR 11 11 3 11 5 1 23 119 185 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 82 u a - - MP 12 11 3 16 6 2 25 118 184 -9.270 -9.210 -0.019 -7.986 -8.266 -8.661 -1.967 -2.110 -2.140 0.934 -2.008 -2.972 1.495 -2.410 -2.199 0.958 -2.755 -0.636 1.694 0.759 0.405 -0.344 ML 13 11 3 16 6 1 20 116 182 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 3 16 6 1 20 116 182 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 16 113 179 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 22 117 183 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 22 117 183 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 81 c g - - MP 18 17 6 22 4 2 23 116 182 -7.229 -8.474 -0.062 -4.928 -4.274 -4.359 -4.017 -0.696 2.071 -4.445 2.893 -3.565 -4.064 -0.582 -4.373 -2.521 0.695 -4.356 -0.488 -2.943 ML 19 17 6 22 4 1 18 115 180 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 4 1 19 115 180 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 21 17 6 22 4 0 16 113 178 -12.737 -14.007 -2.036 -0.404 IL 22 22 5 22 4 1 20 115 181 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 23 23 6 23 3 1 21 115 181 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 80 - c - - MR 24 23 6 26 5 1 22 114 180 -7.420 -0.031 -7.235 -7.447 -8.339 -1.125 0.977 -1.970 0.399 D 25 23 6 26 5 0 15 112 178 -5.352 -0.707 -2.978 -4.409 -2.404 IR 26 26 3 26 5 1 19 114 180 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 79 u a - - MP 27 26 3 31 6 2 22 113 179 -9.270 -9.210 -0.019 -7.986 -8.266 -8.661 -2.792 -2.862 -2.892 0.512 -2.398 -3.669 1.637 -2.926 -2.921 0.618 -3.437 -1.134 2.302 -3.065 1.197 0.123 ML 28 26 3 31 6 1 17 111 177 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 17 111 176 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 3 31 6 0 12 107 172 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 19 112 178 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 19 112 178 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 78 U A - - MP 33 32 6 37 6 2 21 111 177 -9.270 -9.210 -0.019 -7.986 -8.266 -8.661 -5.137 -4.975 -4.864 -1.216 -3.626 -5.338 0.711 -4.379 -4.862 -1.072 -5.188 -2.846 3.642 -5.242 -1.280 -3.566 ML 34 32 6 37 6 1 16 109 175 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 16 109 174 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 12 105 171 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 18 110 176 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 18 110 176 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 77 U G - - MP 39 38 6 43 6 2 19 109 175 -9.270 -9.210 -0.019 -7.986 -8.266 -8.661 -4.831 -4.780 -4.366 -1.052 -2.929 -4.679 1.368 -3.759 -4.416 -0.981 -4.635 -2.764 0.430 -4.843 3.371 -3.254 ML 40 38 6 43 6 1 16 107 173 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 15 107 172 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 11 104 169 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 17 108 174 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 17 108 174 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 76 A U - - MP 45 44 6 49 6 2 17 107 173 -9.270 -9.210 -0.019 -7.986 -8.266 -8.661 -4.495 -3.368 -4.438 3.647 -5.163 -6.315 -0.814 -4.431 -4.329 0.314 -4.909 -0.747 -1.226 -5.365 -2.751 -3.250 ML 46 44 6 49 6 1 15 105 171 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 13 105 171 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 11 103 168 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 16 106 172 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 15 106 172 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 75 G U - - MP 51 50 6 55 4 2 15 105 171 -7.341 -7.548 -0.040 -5.962 -4.090 -2.757 -4.282 0.798 -5.363 -6.159 -0.901 -4.261 -3.855 0.718 -4.411 3.445 -1.236 -5.208 -2.835 -2.910 ML 52 50 6 55 4 1 13 104 170 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 12 103 169 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 11 102 168 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 15 105 171 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 14 105 170 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - C - - - ML 57 56 6 59 3 1 13 103 169 -8.332 -0.016 -6.986 -2.641 1.798 -3.465 -1.881 D 58 56 6 59 3 0 10 101 166 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 13 104 169 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - G - - - ML 60 59 3 62 3 1 13 102 168 -8.332 -0.016 -6.986 -0.838 -1.606 1.173 -0.221 D 61 59 3 62 3 0 10 100 166 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 13 103 168 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - U - - - ML 63 62 3 65 3 1 12 101 167 -8.332 -0.016 -6.986 -0.547 -1.268 -1.787 1.384 D 64 62 3 65 3 0 9 99 165 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 12 102 167 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 13 - a - - - ML 66 65 3 68 3 1 11 100 166 -8.332 -0.415 -2.017 0.697 -1.051 -1.244 0.560 D 67 65 3 68 3 0 9 98 164 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 12 101 167 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - u - - - ML 69 68 3 71 3 1 11 99 165 -2.801 -0.241 -6.592 0.045 -0.844 -1.192 0.981 D 70 68 3 71 3 0 8 98 163 -8.121 -0.284 -2.512 IL 71 71 3 71 3 1 11 100 166 -0.961 -1.129 -5.108 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - G - - - ML 72 71 3 74 3 1 10 98 164 -8.332 -0.016 -6.986 -2.341 -3.663 1.849 -3.046 D 73 71 3 74 3 0 5 95 161 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 9 98 164 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - G - - - ML 75 74 3 77 3 1 9 97 163 -8.332 -0.016 -6.986 -2.341 -3.663 1.849 -3.046 D 76 74 3 77 3 0 5 94 160 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 8 97 163 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - A - - - ML 78 77 3 80 3 1 8 96 162 -8.332 -0.016 -6.986 1.392 -0.812 -1.580 -1.084 D 79 77 3 80 3 0 4 93 159 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 8 96 162 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - c - - - ML 81 80 3 83 3 1 7 95 161 -8.332 -0.134 -3.550 -1.125 0.977 -1.970 0.399 D 82 80 3 83 3 0 4 92 157 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 7 96 161 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - u - - - ML 84 83 3 86 3 1 6 94 160 -8.216 -0.299 -2.444 -0.507 -1.054 0.264 0.691 D 85 83 3 86 3 0 3 89 154 -7.119 -2.632 -0.266 IL 86 86 3 86 3 1 8 95 161 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - u - - - ML 87 86 3 89 3 1 7 94 160 -7.938 -0.021 -6.592 0.123 -0.770 -0.366 0.631 D 88 86 3 89 3 0 3 84 150 -8.121 -3.634 -0.127 IL 89 89 3 89 3 1 7 94 160 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - a - - - ML 90 89 3 92 3 1 6 93 159 -1.944 -0.454 -6.592 0.242 -0.286 -0.210 0.179 D 91 89 3 92 3 0 3 77 142 -8.121 -0.284 -2.512 IL 92 92 3 92 3 1 7 97 162 -0.404 -2.102 -6.456 0.000 0.000 0.000 0.000 [ MATL 24 ] 35 - a - - - ML 93 92 3 95 3 1 5 54 73 -8.332 -0.016 -6.986 0.513 -1.009 -0.056 0.156 D 94 92 3 95 3 0 0 53 72 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 4 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 36 - a - - - ML 96 95 3 98 3 1 4 53 72 -8.332 -0.016 -6.986 0.467 -0.993 -0.061 0.210 D 97 95 3 98 3 0 0 52 71 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 4 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 37 - U - - - ML 99 98 3 101 3 1 3 52 71 -8.332 -0.016 -6.986 -0.599 -1.286 -1.818 1.404 D 100 98 3 101 3 0 0 51 70 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 3 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 38 - U - - - ML 102 101 3 104 3 1 2 51 70 -8.332 -0.016 -6.986 -1.289 -0.491 -2.046 1.399 D 103 101 3 104 3 0 0 49 69 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 2 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 39 - a - - - ML 105 104 3 107 3 1 2 50 69 -3.225 -0.328 -3.374 0.811 -0.592 -0.588 -0.124 D 106 104 3 107 3 0 0 48 67 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 2 50 69 -1.833 -0.565 -4.533 0.000 0.000 0.000 0.000 [ MATL 29 ] 41 - c - - - ML 108 107 3 110 3 1 3 48 67 -8.199 -0.017 -6.853 0.422 0.609 -1.347 -0.429 D 109 107 3 110 3 0 0 47 66 -7.215 -0.589 -1.606 IL 110 110 3 110 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 42 - G - - - ML 111 110 3 113 3 1 2 47 66 -8.332 -0.016 -6.986 -0.390 -2.297 1.451 -1.736 D 112 110 3 113 3 0 0 46 65 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 43 - U - - - ML 114 113 3 116 3 1 2 46 65 -8.332 -0.016 -6.986 -1.296 -0.508 -2.052 1.405 D 115 113 3 116 3 0 0 45 64 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 44 - C - - - ML 117 116 3 119 3 1 2 45 64 -8.332 -0.016 -6.986 -2.641 1.798 -3.465 -1.881 D 118 116 3 119 3 0 0 44 63 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 45 - U - - - ML 120 119 3 122 3 1 1 44 63 -8.701 -0.015 -7.019 -2.186 -2.064 -2.947 1.770 D 121 119 3 122 3 0 0 43 62 -5.620 -0.734 -1.403 IL 122 122 3 122 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 74 - A - - MR 123 122 3 125 3 1 1 43 62 -8.701 -0.015 -7.019 1.839 -3.116 -2.676 -2.735 D 124 122 3 125 3 0 0 41 60 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 73 - U - - MR 126 125 3 128 3 1 1 42 61 -8.701 -0.015 -7.019 -2.186 -2.064 -2.947 1.770 D 127 125 3 128 3 0 0 40 59 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 72 - U - - MR 129 128 3 131 3 1 1 41 60 -8.701 -0.015 -7.019 -2.186 -2.064 -2.947 1.770 D 130 128 3 131 3 0 0 39 58 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 71 - c - - MR 132 131 3 134 3 1 1 40 59 -8.701 -0.015 -7.019 -0.299 0.608 -1.450 0.374 D 133 131 3 134 3 0 0 38 57 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 70 - A - - MR 135 134 3 137 3 1 1 39 58 -8.701 -0.015 -7.019 1.839 -3.116 -2.676 -2.735 D 136 134 3 137 3 0 0 37 56 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 69 - A - - MR 138 137 3 140 3 1 1 38 57 -8.701 -0.015 -7.019 1.839 -3.116 -2.676 -2.735 D 139 137 3 140 3 0 0 36 55 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 68 - U - - MR 141 140 3 143 3 1 1 37 56 -8.701 -0.015 -7.019 -0.547 -1.268 -1.787 1.384 D 142 140 3 143 3 0 0 35 54 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 67 - C - - MR 144 143 3 146 5 1 1 36 55 -7.420 -0.031 -7.235 -7.447 -8.339 -1.237 1.367 -1.179 -0.849 D 145 143 3 146 5 0 0 35 53 -5.352 -0.707 -2.978 -4.409 -2.404 IR 146 146 3 146 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 46 66 a u - - MP 147 146 3 151 6 2 2 35 54 -9.270 -9.210 -0.019 -7.986 -8.266 -8.661 -3.559 -2.943 -3.594 2.912 -3.372 -4.546 0.887 -3.619 -3.566 1.069 -4.063 -0.621 1.319 -3.891 -1.073 -2.502 ML 148 146 3 151 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 3 151 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 47 65 G C - - MP 153 152 6 157 6 2 2 33 52 -9.270 -9.210 -0.019 -7.986 -8.266 -8.661 -5.457 -3.443 -5.661 -0.299 -6.230 -4.961 -1.417 -5.928 -4.763 3.771 -5.056 -1.179 -1.786 -4.928 -3.499 -4.528 ML 154 152 6 157 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 30 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 48 64 U A - - MP 159 158 6 163 6 2 2 31 50 -9.270 -9.210 -0.019 -7.986 -8.266 -8.661 -5.137 -4.975 -4.864 -1.216 -3.626 -5.338 0.711 -4.379 -4.862 -1.072 -5.188 -2.846 3.642 -5.242 -1.280 -3.566 ML 160 158 6 163 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 49 63 C G - - MP 165 164 6 169 4 2 2 29 48 -7.341 -7.548 -0.040 -5.962 -4.364 -4.326 -4.106 -0.479 -2.823 -4.563 3.281 -3.605 -4.121 -0.285 -4.443 -2.271 1.638 -4.436 -0.480 -2.947 ML 166 164 6 169 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 31 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - G - - - ML 171 170 6 173 3 1 1 26 45 -8.701 -0.169 -3.207 -2.341 -3.663 1.849 -3.046 D 172 170 6 173 3 0 0 25 44 -5.620 -0.734 -1.403 IL 173 173 3 173 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 62 - A - - MR 174 173 3 176 5 1 1 25 44 -7.275 -0.034 -7.091 -7.303 -8.194 1.795 -2.791 -2.381 -2.375 D 175 173 3 176 5 0 0 24 43 -6.028 -0.401 -3.654 -5.085 -3.079 IR 176 176 3 176 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 51 61 G C - - MP 177 176 3 181 6 2 2 24 43 -9.270 -9.210 -0.019 -7.986 -8.266 -8.661 -3.211 -0.198 -3.292 0.865 -3.630 -3.932 0.315 -3.701 -0.313 3.044 -3.795 -0.364 0.087 -3.287 -1.445 -2.371 ML 178 176 3 181 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 3 181 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 3 181 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 60 G C - - MP 183 182 6 187 6 2 2 22 41 -9.270 -9.210 -0.019 -7.986 -8.266 -8.661 -5.457 -3.443 -5.661 -0.299 -6.230 -4.961 -1.417 -5.928 -4.763 3.771 -5.056 -1.179 -1.786 -4.928 -3.499 -4.528 ML 184 182 6 187 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 59 C G - - MP 189 188 6 193 6 2 2 20 39 -9.270 -9.210 -0.019 -7.986 -8.266 -8.661 -4.307 -4.327 -4.052 -0.560 -2.790 -4.496 3.004 -3.575 -4.081 -0.398 -4.398 -2.368 0.772 -4.384 1.972 -2.932 ML 190 188 6 193 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 54 58 g c - - MP 195 194 6 199 4 2 2 18 37 -7.341 -7.548 -0.040 -5.962 -3.748 -2.866 -3.855 0.640 -4.071 -4.832 0.066 -3.983 2.320 2.560 -4.209 -0.478 -0.309 -4.167 -1.811 -2.749 ML 196 194 6 199 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 198 194 6 199 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 199 199 5 199 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 200 200 6 200 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - u - - - ML 201 200 6 203 3 1 1 15 33 -8.332 -0.016 -6.986 0.103 -0.944 -0.653 0.824 D 202 200 6 203 3 0 0 15 33 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - U - - - ML 204 203 3 206 3 1 1 13 31 -8.332 -0.016 -6.986 -2.186 -2.064 -2.947 1.770 D 205 203 3 206 3 0 0 13 32 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - U - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 -0.914 -1.212 -0.815 1.304 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME msr ACC RF00170 DESC Retron msr RNA LENG 69 MAXL 170 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 1 21:44:16 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF00170/CM NSEQ 7 EFFN 3.961426 CKSUM 156557289 STATS LOCAL MSV -8.3641 0.71900 STATS LOCAL VITERBI -8.9779 0.71900 STATS LOCAL FORWARD -3.8612 0.71900 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44870 1.52789 1.41438 1.18725 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 0.00000 * 1 1.26892 2.95006 0.52741 2.57185 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 2 3.61157 0.09575 4.15837 3.02285 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 3 1.89776 1.61317 1.80167 0.72192 3 u - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 4 3.31933 0.23039 3.15941 2.06237 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 5 2.31249 1.61878 2.15269 0.53329 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 6 3.76916 2.54481 3.60754 0.13774 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 7 3.47128 1.91733 3.33459 0.24042 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 8 0.15695 3.59963 2.43769 3.48806 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 9 2.24217 3.50995 0.18899 3.32215 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 10 3.61157 0.09575 4.15837 3.02285 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 11 2.13475 2.68255 0.49826 1.58109 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 12 1.84560 2.43398 2.81687 0.36443 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 13 0.86851 2.22189 2.35363 0.97552 13 a - - - 1.38629 1.38629 1.38629 1.38629 0.33380 4.15041 1.31659 1.46634 0.26236 1.09861 0.40547 14 1.37558 2.06049 2.31257 0.65218 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.21287 1.76808 3.85967 1.13267 0.38886 0.11116 2.25184 15 3.33157 4.28134 0.07369 3.84078 18 G - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 16 3.33157 4.28134 0.07369 3.84078 19 G - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 17 0.36498 1.97520 2.66406 2.32905 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 18 2.35092 0.64385 2.96012 1.11584 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.12020 4.15041 2.32788 1.46634 0.26236 1.09861 0.40547 19 1.84048 2.22429 1.15844 0.86956 22 u - - - 1.38629 1.38629 1.38629 1.38629 0.24853 4.06513 1.59509 1.46634 0.26236 2.10261 0.13027 20 1.30801 1.97799 1.63785 0.92408 23 u - - - 1.38629 1.38629 1.38629 1.38629 0.04306 3.85967 3.85967 1.46634 0.26236 2.94498 0.05404 21 1.22061 1.57939 1.51847 1.27367 24 a - - - 1.38629 1.38629 1.38629 1.38629 0.38078 1.21877 3.85967 1.90286 0.16151 0.11116 2.25184 22 1.01558 2.16126 1.40884 1.27941 35 a - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 23 1.04987 2.14943 1.41186 1.23864 36 a - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 24 1.88808 2.44901 2.84276 0.35098 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 25 2.49119 1.76350 3.02086 0.36099 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 26 0.79319 1.81504 1.81798 1.50321 39 a - - - 1.38629 1.38629 1.38629 1.38629 0.26721 2.07692 2.21482 0.23492 1.56366 1.09861 0.40547 27 1.07919 0.89691 2.45847 1.79135 41 c - - - 1.38629 1.38629 1.38629 1.38629 0.03538 4.05234 4.05234 1.46634 0.26236 0.25362 1.49606 28 1.71970 3.19693 0.32755 2.82504 42 G - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 29 2.49677 1.77686 3.02598 0.35672 43 U - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 30 3.61157 0.09575 4.15837 3.02285 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 31 3.22994 3.09348 3.76567 0.11435 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 32 0.58761 2.25376 1.92471 1.64287 46 A - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 33 3.01456 3.87293 0.09638 3.81589 47 G - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 34 3.78559 2.54662 3.61647 0.13687 48 U - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 35 3.08771 0.41874 2.87127 1.42757 49 C - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 36 3.33157 4.28134 0.07369 3.84078 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 37 1.74361 2.65543 0.39777 2.48859 51 G - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 38 2.99248 3.84059 0.09943 3.77233 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 39 3.17317 0.61692 2.99194 0.99876 53 C - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 40 2.32656 2.94964 0.23163 2.86880 54 G - - < 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 41 1.32020 2.12642 1.85655 0.78210 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 42 3.22994 3.09348 3.76567 0.11435 56 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 43 2.19769 2.38655 1.99018 0.41503 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 44 0.86342 0.96048 2.76247 2.02164 58 a - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 45 2.28630 3.15496 0.21936 2.94337 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 46 3.96175 0.11737 3.71530 2.69758 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 47 2.11128 0.44647 2.47297 1.86625 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.15474 4.15041 2.05882 1.46634 0.26236 1.09861 0.40547 48 0.10038 3.64538 3.33172 3.39144 62 A - - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03180 4.03180 1.46634 0.26236 0.22073 1.61917 49 1.57987 3.03623 0.37424 2.84438 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 50 0.15527 3.81543 2.38174 3.52671 64 A - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 51 3.99632 0.11570 3.73248 2.70390 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 52 1.76584 2.16224 2.08040 0.52931 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 53 2.51402 0.34794 2.28839 2.19387 67 C - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 54 1.84560 2.43398 2.81687 0.36443 68 U - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 55 0.07814 3.88411 3.55116 3.65320 69 A - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 56 0.07814 3.88411 3.55116 3.65320 70 A - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 57 1.64658 0.90397 2.51808 1.13407 71 c - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 58 3.22994 3.09348 3.76567 0.11435 72 U - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 59 3.22994 3.09348 3.76567 0.11435 73 U - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 60 0.07814 3.88411 3.55116 3.65320 74 A - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 61 3.51602 2.41904 3.29577 0.16932 75 U - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 62 3.70439 2.80484 3.40712 0.12587 76 U - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 63 2.51387 3.52414 0.16335 3.21198 77 G - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 64 0.15534 3.81464 2.38160 3.52589 78 A - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 65 1.01773 2.32559 1.04116 1.67231 79 a - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 66 2.35092 0.64385 2.96012 1.11584 80 C - - - 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 67 0.93568 3.31550 0.64350 3.08097 81 G - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 68 1.37930 1.33745 1.29038 1.55796 82 g - - > 1.38629 1.38629 1.38629 1.38629 0.03202 4.15041 4.15041 1.46634 0.26236 1.09861 0.40547 69 1.21541 1.45820 1.82443 1.17297 83 u - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.13453 * 1.46634 0.26236 0.00000 * //