# STOCKHOLM 1.0 #=GF ID Purine #=GF AC RF00167 #=GF DE Purine riboswitch #=GF AU Breaker RR; 0000-0002-2165-536X #=GF GA 37.0 #=GF NC 36.9 #=GF TC 37.0 #=GF SE Boese B, Barrick JE #=GF SS Published; PMID:12787499 #=GF TP Cis-reg; riboswitch; #=GF BM cmbuild -F CM SEED #=GF CB cmcalibrate --mpi CM #=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 742849.287494 CM SEQDB #=GF CL CL00123 #=GF DR SO; 0000035; riboswitch; #=GF DR GO; 0009113; purine nucleobase biosynthetic process; #=GF RN [1] #=GF RM 12787499 #=GF RT Riboswitches Control Fundamental Biochemical Pathways in Bacillus subtilis #=GF RT and Other Bacteria. #=GF RA Mandal M, Boese B, Barrick JE, Winkler WC, Breaker RR #=GF RL Cell 2003;113:577-586. #=GF RN [2] #=GF RM 14718920 #=GF RT Adenine riboswitches and gene activation by disruption of a transcription #=GF RT terminator. #=GF RA Mandal M, Breaker RR #=GF RL Nat Struct Mol Biol 2004;11:29-35. #=GF RN [3] #=GF RM 15549109 #=GF RT Structure of a natural guanine-responsive riboswitch complexed with the #=GF RT metabolite hypoxanthine. #=GF RA Batey RT, Gilbert SD, Montange RK #=GF RL Nature. 2004;432:411-415. #=GF RN [4] #=GF RM 23842498 #=GF RT Three-state mechanism couples ligand and temperature sensing in #=GF RT riboswitches. #=GF RA Reining A, Nozinovic S, Schlepckow K, Buhr F, Furtig B, Schwalbe H #=GF RL Nature. 2013;499:355-359. #=GF CC Riboswitches are metabolite binding domains within certain messenger RNAs #=GF CC that serve as precision sensors for their corresponding targets. #=GF CC Allosteric rearrangement of mRNA structure is mediated by ligand binding, #=GF CC and this results in modulation of gene expression. A class of riboswitches #=GF CC that selectively recognises guanine and becomes saturated at #=GF CC concentrations as low as 5 nM. In Bacillus subtilis, this mRNA motif is #=GF CC located on at least five separate transcriptional units that together #=GF CC encode 17 genes that are mostly involved in purine transport and purine #=GF CC nucleotide biosynthesis. It has also been shown that some members of this #=GF CC family are specific for adenine instead. Hence this family are termed #=GF CC purine riboswitches. #=GF WK Purine_riboswitch #=GF SQ 133 X83878.1/168-267 UUACAAUAUAAUAGGAACAC-U-CAUAUAAUCGCGUGGAUAUGG-CACGCAA-GUUUCUACCGGGCA-CC--GUAAA-UGUCC---GACUAUG-GGUGAGCAAUGGAACCGC- AF270087.1/2580-2679 ---AAAAUAAUUUAUAUGAC-U-CAUAUAAUCUAGAGAAUAUGGCUUUAGAA-GUUUCUACCGUGUCGCC--AUAAACGACAC---GACUAUG-AGUAACAAUCCAAUACAU- AL596165.1/154156-154057 AAUCGUCUACAAUAAUAAAG-U-CGUAUAAGUUCGGUAAUAUGG-ACCGUUC-GUUUCUACCAGGCAACC--GUAAAAUGCCA---GGCUACG-AGCUAUUGUAAAAUUU--- AL596170.1/223345-223246 AUAACUUAAAACCGAAAUAC-U-UAUAUAAUAGUUGCGAU-UGG-GCGACGA-GUUUCUACCUGGUUACC--GUAAAUAACCG---GACUAUG-AGUAGUUUGUAUAAAGA-- AB008757.1/115-16 AAUGAAUCACGCUGACUCAC-U-CAUAUAAUCGCAAGAAUACGG-CUUGCGA-GUCUCUACCAGCCGACC--GUAAAUCGGCU---GACUAUG-AGUGGCAAUGUCAGGA--- U51115.1/15592-15691 ---GAAAUCAAAACACGACC-U-CAUAUAAUCUUGGGAAUAUGG-CCCAUAA-GUUUCUACCCGGCAACC--GUAAAUUGCCG---GACUAUG-CAGGGAAGUGAUCGAUAAA AL591975.1/251119-251020 AAUCCGCUACAAUAAUAUAG-U-CGUAUAAGUUCGGUAAUAUGG-ACCGUUC-GUUUCUACCAGGCAACC--GUAAAAUGCCA---GGCUACG-AGCUAUUGUAAAAUUU--- AL591981.1/205922-205823 AUAACUUAAAACCGAAAUAC-U-UGUAUAAUAGUUGCGAU-UGG-GCGACGA-GUUUCUACCUGGUUACC--GUAAAUAACCG---GACUAUG-AGUAGUUUGUAUAAAGA-- ABDP01000013.1/128838-128739 GACAUAAUUAAAUAAUUUGC-U-CAUAUAAUUCCU-GAAUAUGG--AGGGAA-GUUUCUACCAGAUAACC--GUAAAUUGUCU---GACUAUG-AGUGGAAUCCUACUUAAU- CP000764.1/271074-271175 AGAUAAUAUAAAACAAUCCU-U-CAUAUAUCCUCAAUAAUAUGG-UUUGAGA-GUCUCUACCGGGUUACC--GUAAACAACCU---GACUAUG-AAGGCAGUGCGUCUUAUG- AAEQ01000019.1/51159-51260 CUUCGAAAAGAAUCACUGCC-U-CAUAUAAUCUUGGAGAUAAGG-UCCAUAA-GUUUCUACCUGGCAACC--AUGAAUUGCUA---GACUAUG-AGGGGAAAAGUGUGUAAC- AAEK01000017.1/86437-86538 AGAUAAUAUAAAACGAUCCU-U-CAUAUAUCCUCAAAGAUAAGG-UUUGAGA-GUCUCUACCGGGUUACC--GUAAACAACCU---GACUAUG-AAGGCAGUGUGUCUUAUA- CP000001.1/309094-309195 AAAGAAUAAUAUAUAAGACC-U-CAUAUAAUCGCGGGGAUAUGG-CCUGCAA-GUCUCUACCUAACGACC--GUUAUUCGUUA---GACUAUG-AGGGAAAGUCACUCGGUA- CP000410.1/1642356-1642451 AAAAUUGAAUAUCGUUUUAC-U-UGUUUAUGUCGUGAAU--UGG--CACGAC-GUUUCUACAAGGUG-CC--GG-AA-CACCU---AACAAUA-AGUAAGUCAGCAGUGAGA- AAWP01000021.1/27378-27279 GUAUAAUCGCGCCGUUUGCU-U-CGUAUAACCCCAAUGAUAUGG-UUUGGGG-GUCUCUACCAGCUC-CC--GCAAA-GUGCU---GAUUACG-AAGAGUUGAGAUCACUGU- CP000721.1/2204674-2204778 AAAAAGUUAAUAAUAUUCAC-U-UAUAUAAAUCUGAUAAUAAGG-GUCGGAU-GUUUCUACCAAGCUACC--GUAAAUUGCUAUAGGACUAUA-AGUGUCUACUUAAAAAUU- CP000724.1/951516-951617 CUCAGUCGAAAAUUGAAGAC-U-CAUAUAAUGUCGAUAAUAGGG-UUCGACA-GUUUCUACAGGAUCACC--GAAAAUGAUUC---UACUAUG-AGUGAAAGUGUACCUAGG- AANE01000012.1/49153-49054 AAGUUACCGCUUAAGCCCUC-U-CGUAUAACCCCACUAAUAUGG-UUUGGGG-GUCUCUACCAGGAA-CC--GAUAA-UUUCU---GAUUACG-AAGAGUAUUGCGUUAUGC- AE017334.2/342356-342255 UUAAUACGGACGAUGUUACC-U-CAUAUAUACUCGAUAAUAUGG-AUCGAGA-GUUUCUACCCGGCAACC--UUAAAUUGCUG---GACUAUG-GGGAAAACUAAUGAAUAU- AAXV01000026.1/31334-31233 AUAGAUUCAUACAAUUUUAC-U-CAUAUAAUAGCGAGGAUAUGG-CUUGCAA-GUUUCUACCGAUUUACC--GUAAAUAAAUC---GACUAUG-GGUAGCAAUGCUUUUAGA- AAWL01000019.1/26832-26933 AGACAACAUAUUGCUCCUAC-U-CGUAUAAUUUUGAGAAUAUGG-CUCAAGA-GUCUCUACCGGGCAACC--GUAAAUUGCCC---GACUACG-AGUGAAAGUGUACCUAGG- AE016877.1/298774-298875 AGAAACAAUAAUAUAAGACC-U-CAUAUAAUCGCGGGGAUAUGG-CCUGCAA-GUCUCUACCUAACGACC--GUUAUUCGUUA---GACUAUG-AGGGAAAGUCACUCGGUA- BA000028.3/760473-760574 CAAUUUUUAUCCAAUGCCUU-U-CGUAUAUCCUCGAUAAUAUGG-UUCGAAA-GUAUCUACCGGGUCACC--GUAAAUGAUCU---GACUAUG-AAGGCAGAAGCAGGUUCG- CP000002.3/2295936-2295837 AAUUUGAUACAUUAUAUCAC-U-CAUAUAAUCGCGUGGAUAUGG-CACGCAA-GUUUCUACCGGGCA-CC--GUAAA-UGUCC---GACUAUG-AGUGGGCGAUAAGAAAAC- AAEN01000023.1/16980-17081 GAAAAGUGAAUAUUAUGCCG-U-CGUAUAAUAUCGGGGAUAUGG-CCCGAAA-GUUUCUACCUAGCUACC--GUAAAUGGCUU---GACUACG-AGGCGUUUUUAUAAAGGU- BA000043.1/272473-272574 UACGGAUAGACGAAAGCCCU-U-CAUAUAAGCGCAAGAAUAUGG-CUUGCGC-GUCUCUACCGGGCCGCC--GUAAACGGCCC---GACUAUG-AAGGCAGAAGACGCUGCU- AM406671.1/1321062-1320965 AAAACCGUGGGAAUAUAAUC-U-UAUUUAUACCUAGA-AUAUGG--CUGGGC-GUUUCUACCUCGUA-CC--GUAAA-UGCGA---GACAAUA-AGGAAAUUCGAUUUUUCA- CP000024.1/1182948-1183043 UCAAACAAUGAGAACAUUAC-U-UAUUUAUGUCACGAA---UGG-GCGUGAC-GUUUCUACAAGGUG-CC--GU-AA-CACCU---AACAAUA-AGUAAGCUAAUUUAGUCA- AE017333.1/692981-693082 AGUAAUUUAAAAAAGACUUG-U-CGUAUAAUCAUGGGGAUAUGG-CCCAUAA-GUUUCUACCAAGCUACC--GUAAAUAGCUU---GACUACG-CUUGUAUACAAUAUUUUA- AP009351.1/425734-425836 GUUAAAUAAUUUACAUAAAC-U-CAUAUAAUCUAAAGAAUAUGG-CUUUAGAAGUUUCUACCAUGUUGCC--UUGAACGACAU---GACUAUG-AGUAACAACACAAUACUA- ABCF01000049.1/253-152 UAAAUAUGGUUUGCAUACCU-U-CAUAUAUCCUCGAUAAUAUGG-UUCGAAA-GUCUCUACCGGGUCACC--GUAAAUGAUCU---GACUAUG-AAGGCAGUAUUCAUUUUG- CP000724.1/3378356-3378255 AUAAAAACUAAAUAUUCAUC-U-CGUAUAACAUUGGAAAUAAGG-UCCAAAA-GUUUCUACCAGACUACC--GUAAACAGUCU---GACUACG-AGGGUUAAAUAAGCAAUA- BA000016.3/2871201-2871102 AUAAAAAAAUAAAUUUUGCU-U-CGUAUAACUCUAAUGAUAUGG-AUUAGAG-GUCUCUACCAAGAA-CC--GAGAA-UUCUU---GAUUACG-AAGAAAGCUUAUUUGCUU- ABDW01000010.1/34311-34212 AAUAAAAAAUAAAUUUUGCU-U-CGUAUAACUCUAAUGAUAUGG-AUUAGAG-GUUUCUACCAAGAA-CC--GAGAA-UUCUU---GAUUACG-AAGAAAGCAAAUAGGCUU- AAOX01000028.1/44442-44543 ACUGAAUAUGUCGUAUUACG-U-CGUAUAAUAUCAGGGAUAUGG-CCUGAAA-GUUUCUACCGAGCUGCC--GUAAAUAGCUU---GACUACG-AGGUAAAUGUUUAUAGGG- AARF01000133.1/10017-10118 UUAAUUUCAUAUAGGAAAAC-U-CGUAUAAAUUCGGGAAUAUGG-CCCGAAA-GUCUCUACCCAGAAACC--GUAAAUUUUUG---GACUACG-AGAAGAUAAGUACGGCAG- AM180355.1/256217-256318 UAUAUAAAAUAUAAACUCAC-U-CGUAUAUGCUCAGAAAUAUGG-UCUGAGA-GUCUCUACCAAGAUACC--GUAAAUAUCUU---GACUAUG-AGUGAAAUUAUUAUACCA- AAOX01000007.1/111657-111757 AUUCAUAAAAUAUUUAUUAC---UGUAUAUGUCCGGAAAUAAGG-UCUGGAC-GUUUCUACCAAGCUGCC--GUAAAUGGCUU---GUCUACA-GGUUAAGCUUUUCCCCGU- CR378679.1/147737-147638 UAAUAAUGGGUAAAGUUACU-U-CGUAUAACCCCACUUAUAGGG-UGUGGGG-GUCUCUACCAGAAU-CC--GUAAA-AUUCU---GAUUACG-AAGAGUUGAGUGAUUGAU- CP000721.1/2808883-2808984 CAACAGUUCAUACAAAAGAC-U-CGUAUAUUUCCGAUAUUAUGG-UUGGAAA-GUCUCUACCUGCUAUCC--GUAAAUUAGCA---GACUACG-AGGUAGUGUUUUAGUGCU- AAOX01000023.1/19446-19345 AUAAUUUCAUAACGAUACAC-U-CAUAUAAUCGCGGGAAUAUGG-CCUGCAA-GUUUCUACCGGACUGCC--GUUAACAGUCU---GACUAUG-GGUGAGCAAUGGGAGGCA- AAFV01000199.1/507-412 UGAAUUCAAUAAUGACAUAC-U-UAUUUAUGCUGUGAAU--UGG--CGCAGC-GUCUCUACAAGACA-CC--UU-AA-UGUCU---AACAAUA-AGUAAGCUUUUAGGCUUG- AP006627.1/1039390-1039491 AAUGUCCAAUAGGAAAAUAC-C-CGUAUAAUUGCAGGAAUAAGG-CCUGCAC-GUUUCUACCGAGCCACC--GUAAAUGGCUU---GACUACG-GCAUGAUAAAUGGAGCGC- CP000232.1/2146016-2145914 AAAAUAAAUAUGGCAAUGGC-C-UGUAUAAUUGGGGGAAUAGGG-CUCCCAA-GUUUCUACCGGGCAACC--GUAAAUUGCCC--UGGCUACA-GCCUGAAAGUGUACCUCA- BA000032.2/1369721-1369820 UAUAAUCGCAAGCGUUUGCU-U-CGUAUAACCCCAAUGAUAUGG-UUUGGGG-GUCUCUACCAGUUC-CC--GCAAA-GUGCU---GAUUACG-AAGAGUUGAGAUCACUGU- BA000043.1/282580-282681 AUAGUGUAUGAGAAGAUCCC-U-CAUAUAAUUUUGGGAAUAUGG-CCCAAAA-GUUUCUACCCAAUCACC--GUAAAUGAUUG---GACUAUG-AGGGAAAGGAUCGGUUUU- CP000612.1/2517987-2517886 CUAUAAAUAAAAAAAUUAAC-U-CGUAUAUUUUCAAGAAUACGG-CUUGAAA-GUUUCUACCAGGCUACC--UUAAAUAGCUU---GACUACG-AGUUUAAUGUCUAUAGUA- CP000612.1/2598111-2598012 AGUUUGUACAAAUUAAUGUU-C-CGUAUAUGCUUGGGAAU-UGG-CUCAAGU-GUUUCUACCGGGCAACC--GU-AAUUGCCC---GACUACG-GGAGGGAAAGUGUACCUA- AAXV01000001.1/285704-285603 AAUGUAAAUUAAAUAAGUCG-U-CGUAUAAUGUCGGGAAUAGGG-CCCGUGA-GUUUCUACCAAGUUACC--GUAAAUAACUU---GACUACG-AUUGAGGUUUAUAUACGU- AP006627.1/1554717-1554818 UAAACGAACAAAGCAUCAGC-U-CGUAUAAUAGCGGUAAUAUGG-UCCGCGA-GUCUCUACCAGGCUGCC--GAUAACGGCCU---GACUACG-AGUGGUCUUUUUCAGUUG- CP000764.1/357645-357544 UUAAUACGGACGGUGUUACC-U-CAUAUAUCCUCGAUAAUAUGG-AUCGAGA-GUUUCUACCUGGCAACC--AAUAAUUGCCG---GACUAUG-GGGAAAACUAAUGAAUAU- CP000557.1/252200-252301 ACGAACAGAACGAAAGCCUU-U-CAUAUAUGCGUGGGAAUAUGG-CUCACGU-GUCUCUACCGGGCCGCC--GUAAACGGCCU---GACUAUG-AAGGCAGAAGACGCUGCU- CP000416.1/1798040-1798138 CAAUUAAAAUAAGUGAUUGC-C-UAUAUAA-UGCCAUAAUAAGG-UUGGCGA-GUUUCUACCCAGGA-CC--GUAAA-UUCUG---GACUAUA-AGCAAAUUGAGAUGAACU- AACY020193176.1/1612-1511 AUUAAAACAUCUUCAAUAAA-U-CGUAUAAUAGAUCGAAUGUGG-CGGUCAA-GUUUCUACCAUAUCACC--GUAAAUGAUAU---GACUACG-AUUGAAUCUUUUCCUGUU- CP000728.1/2202500-2202399 ACAAAAUAAAAUAUUCGCUC-U-UAUAUAAUUCUGAUAAUAGGG-UUCAGAA-GUUUCUACAGAGUAGCC--UUAAACUACUU---UACUAUA-GGAGAUGUUAUUAGGAUG- AP006716.1/2598940-2598838 CGUUAAAUAAUUUAUAUCAC-U-CAUAUAAUCUAAAGAAUAUGG-CUUUAGAAGUUUCUACCAUGUUGCC--ACAAACGACAU---GACUAUG-AGUUCAGACUCAAUACAU- ABCF01000002.1/125327-125427 AUUAUAUUUGAAUAAUAACC-U-UGUAUAAGUUCAGGAAUAUGG-CCUGAGC-GUUUCUACCA-GCUACC--AUAAAUAGCUU---GUCUACA-AGGAUAGUGAUGAUUGAA- AAPS01000004.1/87369-87468 UAUAAUCCCUCUCGUUUGCU-U-CGUAUAACCCCAAUGAUAUGG-UUUGGGG-GUCUCUACCAGUUC-CC--GCAAA-GUGCU---GAUUACG-AAGAGUUGAGAUCAUCGU- BA000004.3/650309-650410 AAUAAAUCGAAAACAUCAUU-U-CGUAUAAUGGCAGGAAUAGGG-CCUGCGA-GUUUCUACCAAGCUACC--GUAAAUAGCUU---GACUACG-AAAAUAAUGGGUUUUUUA- ABCQ01000013.1/101307-101406 AACUACGUCAUUAAAUCACU-U-CGUAUAAUCCCAAUAAUAUGG-UUUGGGA-GUUUCUACCAAGAU-CC--UUAAA-CUCUU---GAUUAUG-AAGUCUGUAACUUUAAAA- AANE01000012.1/71437-71536 AAUUUAGCCGCGAAAUUGCU-U-CGUAUAAUCCCAAUGAUAUGG-UUUGGGA-GUUUCUACCAAGAA-CC--UUAAA-UUCUU---GAUUAUG-AAGUCUGUAACUUUAUGG- CP000382.1/2143272-2143175 GCAGAGAAAUAAAAUAUCAC-U-UAUAUAUACCCUGG-AUAUGG--CAGGGA-GUUUCUACCGGAAA-CC--UAAAA-UUUCC---GACUAUG-AGUGAGUGGACUUGUUGC- BA000028.3/769686-769786 UGAUGUAAUUGAAUAGAAAU-G-CGUAUAAUUAAGGGGAUAUGG-CCCA-CA-GUUUCUACCAGACCACC--GUAAAUGGUUU---GACUACG-CAGUAAUUAUAUUUGUAU- CP000721.1/398929-399026 AAUAUAGCACAUUUGAAAAC-U-UAUAUAU-ACCUUGAAUAUGG-CAAGG-A-GUAUCUACCGGGAG-CC--GUAAA-UUUCC---GACUAUA-AGUGAUAUUAGUAUAGGC- ABDQ01000005.1/131908-131807 UAAAUACGUUAUUAAAUAAC-U-CAUAUAAAUCCGAUAAUAUGG-UUCGGUU-GUUUCUACAGGAAUACC--UUAAAUAUUCC---CGCUAUG-AGUAAAUCUAUGUAUAAU- AAEK01000052.1/27552-27453 AUUAAUUACAUAUGAGAAUC-A-UGUAUAACUCCAAGAAUAUGG-CUUGGGG-GUCUCUACCAGGAA-CC--AAUAA-CUCCU---GACUACA-AAAUGCGUAUUAUAGCGU- CP000764.1/1409725-1409826 AAUAAAUAAGUUAGCUACAC-U-CAUAUAAUCGCAGGAAUAAGG-CCUGCAA-GUUUCUACCGAAGUACC--GUAAAUACUUC---GACUAUG-AGUGAGGACGAAUAGAUU- ABCH01000048.1/17619-17718 UACAAUACCAAUCGUUUGCU-U-CGUAUAACCCCAAUGAUAUGG-UUUGGGG-GUCUCUACCAGCUC-CC--GCAAA-GUGCU---GAUUACG-AAGAGUCAAGAUCACAUU- AAXV01000001.1/277776-277678 AGGAAAAACAAAUAAAUCCC-A-CAUAUAUGCUAGAGGAU-UGG-CUCUAGU-GUCUCUACCCGGCA-CC--GUAAA-UGCUG---GACUAUG-CGGGAAAGCACUUUUGGC- ABCF01000040.1/17523-17422 AAAACAACAAGUAAACACCC-U-CAUAUAAUCUUGGGAAUAUGG-CCCAUAA-GUAUCUACCCGGUUACC--GUAAAUGAUCG---GACUAUG-AGGGAAAGUAGCUGUCUG- AARF01000407.1/2878-2779 AUCAGUCAAAAUAAACAAAC-U-CGUAUAAUCUCGGGAAU-UGG-CCCGGGA-GUCUCUACCUAAUCACC--GG-AAUGAUUA---GCCUACG-AGUGAUGCAACCUCAUAU- CP000557.1/256359-256460 GUGAAUAUUGUCGAAUUCCG-U-CGUAUAAUCCCGGGAAUAUGG-CUCGGGA-GUUUCUACCAAGCUACC--GUAAAUAGCUU---GACUACG-AGGGAUGUGAAGUAGAGG- AP008934.1/2407710-2407608 CAGUUAAUAAUUUAUCUAAC-U-CAUAUAAUCUGAAGGAUACGG-CUUUAGAAGUUUCUACCAUGUUGCC--AUUAACAACAU---GACUAUG-AGUAACCAAUACAAUACA- BA000028.3/786767-786867 CCGACAAUUGAAAAUGAACC-U-CAUAUAAAUUUGAGAAUAUGG-CUCAGAA-GUUUCUACCCAGC-ACC--GUAAAUGGCUG---GACUAUG-AGGGAAGAUGGAUCAUUU- BA000004.3/676475-676576 CGUUCUUUAUAUAAAGUACC-U-CAUAUAAUCUUGGGAAUAUGG-CCCAAAA-GUUUCUACCUGCUGACC--GUAAAUCGGCG---GACUAUG-GGGAAAGAUUUUGGAUCU- CP000612.1/2382946-2382847 UACUCAUAAUGAAAUAGAUU-C-CGUAUAUGCUUAGGAAU-UGG-CUUAAGU-GUUUCUACCGGGCAACC--GU-AAUUGCCC---GACUACG-GAGGGAAAGUGUACCUAG- CP000232.1/1272748-1272647 AAAAAUAAUUUAACCCUGCU-U-CGUAUAUUCCCGGAAAUGCGG-UCCGGGA-GUUUCUACCAGGCAACC--GUAAAUUGCCC---GGCUACG-AAGGUUAUUCUUCGUCGU- ABDQ01000007.1/13684-13586 AAAAGAAUAUAACCACGUAC-U-CAUAUAAGCCUAGAAAUAAGG-UC-GGGC-GUUUCUACCAAAUA-CC--GUAAA-UAUUU---GACUAUG-AGUGGUCUAGUGUAAAUA- CP000673.1/2764266-2764166 UAAAUUUUUCGAUAAAUCAU-U-CGUAUAAUCUUGAUAAUAUGG-UUCAAGA-GUAUCUACCAAGGCACC--AAAAAU-CCUU---GACUAUG-AGUGAAUCACGGGAAAGU- AP006627.1/1115665-1115766 AAGUUAAAAACGAAAACACC-U-CAUAUAUACUCGGGAAUAUGG-CUCGAAC-GUUUCUACCCGGCAACC--GUAAAUUGCCG---GACUAUG-AGGGGAAGUCAUUACGCG- ABDP01000002.1/29688-29587 UGAAAUAAGUUAAUAAUCAU-C-CAUAUAAUCUCAAUAAUAAGG-UUUGAGA-GUCUCUACGAGAGAACC--AUAAAUUCUCU---GUCUAUG-GAUGGAUCUUAGCUAUGC- AAXV01000018.1/6190-6091 AGCUAAAGUAAAUAUUUGAA-C-UGUAUAACCUCAAUAAUAUGG-AUUGAGG-GUCUCUACCAGGAA-CC--AUAAA-AUCCU---GACUACA-AAACUUUGUUUCAUUUUU- CP000425.1/1176227-1176324 UUGAGCUGCUAUAAACAAUC-U-UAUUUAUACCUAGA-AUAUGG--CUGGGC-GUUUCUACCUCGUA-CC--GUAAA-UGCGA---GACAAUA-AGGAAAUUCGAUUUUUCA- AAML04000013.1/228851-228749 AUUCAUGUUUUGUACUGUAU-AACAUAUAAUUUUGACAAUAUGG-GUCAUAA-GUUUCUACCGGAAUACC--GUAAAUAUUCU---GACUAUG-UAUACUAUUAUUUAGUUA- CP000002.3/697032-697134 CAUGACAUGAAAACACAUCC-U-CAUAUAAUCUUGGGAAUAUGG-CCCAUAA-GUCUCUACCCGAUGACC--GUAAAUCAUCG---GACUAUGCAGGAAAGUGGACAAUAAA- CP000557.1/264915-265016 AUAGCGUACAAAAAAAUCCC-U-CAUAUAAUUUUGGGAAUAUGG-CCCAAAA-GUCUCUACCCAAUAACC--GUAAAUUAUUG---GACUAUG-AGGGAAAGGAUCUGUUUU- AAOX01000028.1/42464-42565 UCAUAAUUUAAUAUGCACCU-U-CAUAUAUCCUCGAUAAUACGG-UUCGAAA-GUCUCUACCAGGUCACC--UUAAAUGACUU---GACUAUG-AAGGCAGGUCAUUCUAUA- CP000764.1/308099-308200 AAACAAUAUUAUAUCGCACC-U-CAUAUAAUCGCGGGGUUAUGG-CCUGCAA-GUCUCUACCUAACGACC--GUUAUUCGUUA---GACUAUG-AGGGAAAGUCACUCGGUA- AE017333.1/4024324-4024425 AAAUAAUAGAAGCCCACUUC-U-UGUAUAUAAUCAGUAAUAGGG-UCUGAUU-GUUUCUACCUGGCAACC--GUAAAUCGCCA---GACUACA-AGGAAGUUUGAAUAGAUU- AE001437.1/2824953-2824856 AAUCGUUAAUAUAGUUUAAC-U-CAUAUAU-UUCCUGAAUAUGG-CAGGAU--GUUUCUACAAGGAA-CC--UUAAA-UUUCU---UACUAUG-AGUGAUUUGUUUGUAUGC- CP000232.1/1265132-1265031 CAAUAAAGCCAGUCUUAACU-U-CGUAUAUCCCCGGCAAUAGGG-ACCGGGG-GUUUCUACCAGGCAACC--GCAAAUUGCCC---GGCUACG-AAGGUAUAUCUUCGUUGC- BA000004.3/1593074-1592973 AUUUACAUUAAAAAAAGCAC-U-CGUAUAAUCGCGGGAAUAGGG-CCCGCAA-GUUUCUACCAGGCUGCC--GUAAACAGCCU---GACUACG-AGUGAUACUUUGACAUAG- CP000612.1/3007877-3007778 GGACAUAAAUGAAUCGUUUU-C-CGUAUAUGCUUGGGAAU-UGG-CCCAAGU-GUUUCUACCAGGCAACC--GU-AAUUGCCG---GACUACG-GAGGGAAAGUGUACCUAG- BA000043.1/274257-274358 AUGAAUAUUGUUGAAUUCCG-U-CGUAUAAUCCCGGGAAUAUGG-CUCGGGA-GUUUCUACCAAGCUACC--GUAAAUAGCUU---GACUACG-AGGGAUGCGGGAUCGGAG- ABCQ01000053.1/17569-17470 AUUCUGCAAUUAGUUUCCCU-U-CGUAUAACCCUAAUAAUAUGG-AUUAGGG-GUCUCUACCAGGAA-CC--AAUAA-UUCCU---GAUUACG-AAGAGUUUAGUACUUUAG- CP000382.1/1443221-1443123 ACAGAAUAUUAAUCACGUAC-U-CAUAUAAGCCCAGAAAUAAGG-UC-GGGC-GUUUCUACCAAAUA-CC--GUAAA-UAUUU---GACUAUG-AGUAGUCUAGUGUAAAUU- AAOX01000052.1/9069-8968 AUUUAUAUAAAGAUUUACCC-U-UAUAUAAUAAUGGGGAUAUGG-CCCAUAA-GUUUCUACCUGGCUGCC--GUAAAUGGCCG---GACUAUA-AGGGAAAGAUGAUAUGAC- CP000724.1/944285-944386 AAUUACAUUGUAUAACACAC-U-CAUAUAAUGCCGAAAAUAAGG-UUCGGAA-GUUUCUACCGGAUGACC--GUAAAUCAUCU---GACUAUG-GGUGAAAUUAUUAUAGGA- BA000028.3/1103943-1104044 AAACCUUAUAUAUAGUUUUU-U-CAUAUAAUCGCGGGGAUAUGG-CCUGCAA-GUUUCUACCGGUUUACC--GUAAAUGAACC---GACUAUG-GAAAAGCGGAAAAUUCGA- ABDQ01000002.1/251055-251152 ACAGAGAGAUAAAAUAUCAC-U-UAUAUAUACCCUGA-AUAAGG--CGGGGA-GUUUCUACCGGAAA-CC--GAAAA-UUUCC---GACUAUG-GGUGAGUGGAUUUGUUGC- AAMR01000003.1/106610-106709 UAUAGUAGCAACCGUUUGCU-U-CGUAUAACCCCAAUGAUAUGG-UUUGGGG-GUCUCUACCAGCUC-CC--GCAAA-GUGCU---GAUUACG-AAGGGUUUAGAUCACAAU- AE016877.1/1515239-1515340 AAAUAAAUAGUUAGCUACAC-U-CAUAUAAUCGCGGGGAUAUGG-CCUGCAA-GUUUCUACCGAAGUACC--GUAAAUACUUU---GACUAUG-AGUGAGGACGAAUAUAAU- CP000961.1/1440820-1440919 GCCUCCACAAAACUUAAGCU-U-CGUAUAAUCCCAAUGAUAUGG-UUUGGGA-GUUUCUACCAAGAG-CC--UUAAA-UUCUU---GAUUAUG-AAGUCUGUAGCUUUAUAU- CP000879.1/2164445-2164546 AAUAAAGAAAAAACCUCUUU-C-UGUAUAAUGCCGAUAAUAAGG-UUCGGCA-GUUUCUACCAAACAGCC--GUAAACUGUUU---GACUACA-GUAAGAGGGGUCUGAGAU- ABCC02000029.1/238020-237925 GAAGUAUAAGUAUUCAAAAC-U-UAUAUAUGCUCAAGAU--AGG--UUGAGC-GUUUCUACCAACUA-CC--GU-AA-UAGUU---GACUAUA-AGUUUUCACAUCAGGUAC- AL009126.3/698372-698470 ---GAAAUCAAAACACGACC-U-CAUAUAAUCUUGGGAAUAUGG-CCCAUAA-GUUUCUACCCGGCAACC--GUAAAUUGCCG---GACUAUG-CAGGAAAGUGAUCGAUAA- AE009948.1/1094305-1094210 CAAUUAAAUAUAUGAUUUAC-U-UAUUUAUGCUGAGGAU--UGG--CUUAGC-GUCUCUACAAGACA-CC--GU-AA-UGUCU---AACAAUA-AGUAAGCUAAUAAAUAGC- AL009126.3/4005526-4005624 ---CUUAGAAAAAGACAUUC-U-UGUAUAUGAUCAGUAAUAUGG-UCUGAUU-GUUUCUACCUAGUAACC--GUAAAAAACUA---GACUACA-AGAAAGUUUGAAUAAAUU- CP000853.1/585464-585565 AGUGAAUAUGGAUUUUAAAU-U-UAUAUAAUGCUAAUAAUAUGG-AUUAGCA-GUCUCUACCGAAUAACC--GUAAAUUAUUC---GACUAUG-AAUGAAAGUGUACCUAGG- CP000923.1/528300-528401 AAUAGUUUUAUUAGAGGAAC-U-CAUAUAAUCCCGUGAAUAUGG-CACGGGA-GUUUCUACAAAGCAGCC--GUAAACUGCUU---UACUAUG-GGUGGAAUUUGUUGUUGC- CP001348.1/1707991-1708092 UUAAAUUAUGGAAAAGUAUC-C-CGUAUAUUUUCGGUAAUAUGG-UCCGACA-GUUUCUACGAAGCCGCC--GUAAAUGGCUU---UGCUACG-GGUGUUCAUCUUAGACAU- CP001022.1/235041-235140 GAAUAAACGUAUAGCAACGC-U-CGUAUAAUAGUGGGGAU-UGG-CCCACGA-GUCUCUACCGGAUCGCC--GU-AACGAUCC---GACUACG-GGUGGUGAGUUACUGCUC- AE008691.1/586365-586464 AAAAAUUUAAUAAGAAGCAC-U-CAUAUAAUCCCGAGAAUAUGG-CUCGGGA-GUCUCUACCGAACAACC--GUAAAUUGUUC---GACUAUG-AGUGAAAGUGUACCUA--- CP001022.1/459660-459761 AAAUCAUACAUGCAUCUCCU-U-UGUAUAUACUCGCGAAUAUGG-CGUGAGA-GUCUCUACCGGGUCACC--UUAAACGACCU---GACUAUG-AAGGAGCAGACCCUUCGU- AP008230.1/4499767-4499666 AAAAAAUUUAAAUAGGGCGU-U-CAUAUAAUCGCGGAGAUAGGG-UCCGCAA-GUUUCUACCGGGCUGCC--GUAAAUGGCCU---GACUAUG-AGCGAAACUGUGCCCAGG- CP000726.1/362953-363054 UCAUAUAUCAUAUAAAAAGC-U-CGUAUAUCAUCGGUAAUAUGG-UCCGAAA-GUUUCUACCUGCUAACC--AUAAAUUAGCA---GACUACG-GGGUAUUGUGUAUUUAGU- U51115.1/11655-11754 AGAAAUCAAAUAAGAUGAAU-U-CGUAUAAUCGCGGGAAUAUGG-CUCGCAA-GUCUCUACCAAGCUACC--GUAAAUGGCUU---GACUACG-UAAACAUUUCUUUCGU--- ABDT01000094.2/185981-186078 GAUACGGCACAUUAAAAAAC-U-CAUAUAUACCCUGG-AUAUGG--CAGGGA-GUAUCUACCGGAAA-CC--UUAAA-UUUCU---GACUAUG-AGUGAUAUUAAUAUAAGC- BA000016.3/2618421-2618324 AAAACGGAAUAUAAACAAAC-U-CGUAUAAGCUUUGA-AUAAGG--CAAGGC-GUUUCUACCGGAAA-CC--UUAAA-UUUCC---GUCUAUG-AGUGAAUUUGAUAUACUA- CP000903.1/3101719-3101616 AUAAUUUUAAAUAACAUCAC-U-CGUAUAUACUCGGUAAUAUGG-UCCGAGC-GUUUCUACCUAGUUCCCAAUGAAAGAACUG---GACUACG-GGUUAAAGUAUUCGGUCG- AE005176.1/1159509-1159606 UAGUCUAUAAUAGAACAAUC-U-UAUUUAUACCUAGGAUA-UGG--CUGGGC-GUUUCUACCUCGUA-CC--GUAAA-UGCGA---GACAAUA-AGGAAAUUCGAUUUUUUA- CP001581.1/3749039-3748942 UCAAUAUUUCCAAAGUCAAC-U-CAUAUAU-CCCCAUAAUAAGG-GUGGGA--GUAUCUACCGAGAA-CC--AUAAA-UUUUC---GACUAUG-AGUGAUUAUUAAUAAUGC- CP000923.1/531630-531731 GACAAUUGAAUAAAAAGCAC-U-CAUAUAAUCUCGAGAAUAUGG-CUCGAGA-GUCUCUACCGAACAACC--GUAAAUUGUUC---GACUAUG-AGUGAAAGUGUACCUAGG- CP000853.1/582547-582648 UAUUUAAAAACGAAUAUCAC-U-CAUAUAAUACCGAUAAUAUGG-UUCGGAA-GUAUCUACCGAAUGACC--GAGAAUCAUUC---GACUAUG-AGUGGAAUUAUUAUAUUA- CP000851.1/4146892-4146991 UAAUAUUUACCGUUAACACU-U-CGUAUAAUCUCAAUGAUAUGG-UUUGAGA-GUUUCUACCAAGAG-CC--CUAAA-CUCUU---GAUUAUG-AAGACUUUACUUUAUGUA- CP001186.1/253132-253233 GAAAAGUGAAUAUUAU-GCCGU-CGUAUAAUAUCGGGGAUAUGG-CCCGAAA-GUUUCUACCUAGCUACC--GUAAAUGGCUU---GACUACG-AGGCGUUUGUAUAAAGAU- D88802.1/12464-12365 AAUUAAAUAGCUAUUAUCAC-U-UGUAUAACCUCAAUAAUAUGG-UUUGAGG-GUGUCUACCAGGAA-CC--GUAAA-AUCCU---GAUUACA-AAAUUUGUUUAUGACAUU- CP001022.1/474287-474388 GGAAGAUUGAAUAUAACACC-U-CGUAUAAUAGCAGGGAUAUGG-CUUGCAA-GUUUCUACCCGACGACC--CUAAAUCGUUG---GACUAUG-GGGUAUAUGGAUGUUCGU- ABDT01000031.2/13681-13582 UUUAAAUUAAUAAAUGAGUU-U-CGUAUAAUUCCAAUAAUAUGG-UUUGGAA-GUCUCUACUAGGAA-CC--UAUAA-UUCCU---AAUUACG-AAGAAAAUUUUAUGCAAA- CP001098.1/539421-539522 AUAUAUCAUUGUAUUUUGCC-U-CGUAUAAUUGUGGAGAUAUGG-UCCACGA-GUUUCUACCGGACGGCC--GUAAACUGUUC---GACUACG-GGGGAAACACCUGGGAUG- CP003056.1/1723617-1723718 CAAUUCAAUAUGCAAUACCA-U-CGUAUAUAUUCAGGGAUAUGG-CCUGAAC-GUUUCUACCAAGCUGCC--GUAAAUAGCUU---GACUACG-AGGUAAUGAGAUAGAGUC- AL935263.2/2968829-2968731 UUAUCAAUACAACUAAUUGC-C-UAUAUAA-UGCCAUGAUAUGG-AUGGCGA-GUUUCUACCCAGUG-CC--GUAAA-CACUG---GACUAUA-AGCGAAUUGAGUCGACGG- CP003056.1/1737361-1737461 AUACAAAGUGAAUAUGACCC-U-CAUAUAU-AAUGGGAAUACGG-CCCAUAC-GUCUCUACCCGGUUACC--GUAAAUAAUCG---GACUAUG-AGGGAAAGCGGAAGUUGG- #=GC SS_cons :::::::::::::::::(((.(.((((,,,<<<<<<<_______.>>>>>>>.,,,,,,,,<<<<<<<__.._____>>>>>>...>,,)))).))))::::::::::::::. #=GC RF aaaaaauaaaaaaaauuccc.u.CgUAUAAucccgggAAUAUGG.cccggga.GUUUCUACCaggcagCC..GUAAAcugccu...GACUAcG.agggaaauuuuuuuuuuu. //