INFERNAL1/a [1.1.4 | Dec 2020] NAME Hammerhead_1 ACC RF00163 DESC Hammerhead ribozyme (type I) STATES 147 NODES 38 CLEN 46 W 953 ALPH RNA RF no CONS yes MAP yes DATE Mon Apr 7 16:26:36 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 29 EFFN 29.000000 CKSUM 822789652 NULL 0.000 0.000 0.000 0.000 GA 34.00 TC 34.00 NC 33.90 EFP7GF -14.5231 0.72420 ECMLC 0.73525 -3.45138 4.18494 1600000 329285 0.003644 ECMGC 0.38096 -20.52803 -5.83057 1600000 108073 0.003701 ECMLI 0.72644 -2.44555 5.08166 1600000 284406 0.004219 ECMGI 0.40222 -17.43002 -4.31229 1600000 78255 0.005111 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 0 1 953 2052 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 IL 1 1 2 1 6 1 17 956 2054 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 17 956 2054 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 124 c g - - MP 3 2 3 7 6 4 21 955 2053 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -4.611 -4.471 -4.709 2.451 -4.179 -0.615 2.660 -2.189 -4.701 0.430 -5.231 -0.908 -0.264 -4.861 -1.884 -3.641 ML 4 2 3 7 6 1 15 952 2050 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 15 952 2050 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 11 946 2045 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 16 954 2052 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 16 954 2052 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 123 U A - - MP 9 8 6 13 6 4 21 953 2051 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -7.649 -7.823 -1.427 -4.076 0.097 -7.304 -1.237 -6.413 -1.168 -4.042 -1.195 -6.060 3.696 -7.566 -3.230 -5.987 ML 10 8 6 13 6 1 15 950 2049 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 15 950 2048 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 11 945 2043 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 16 952 2050 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 16 952 2050 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 122 u a - - MP 15 14 6 19 6 3 20 951 2049 -11.083 -11.023 -0.065 -9.799 -4.591 -10.474 -5.003 -4.917 -5.066 0.836 -4.253 -0.250 2.290 -1.218 -5.012 -0.927 -5.533 -2.804 2.631 -5.243 -0.162 -3.893 ML 16 14 6 19 6 1 15 948 2047 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 15 949 2047 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 11 944 2042 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 16 950 2048 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 16 950 2048 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 121 u a - - MP 21 20 6 25 6 3 20 949 2047 -11.024 -10.963 -0.006 -9.739 -10.019 -10.414 -6.561 -6.429 -6.337 -2.368 -2.168 -6.863 2.518 -5.771 -6.294 -2.172 -6.656 -4.172 2.886 -6.641 0.592 -0.782 ML 22 20 6 25 6 1 14 947 2045 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 15 947 2046 -8.495 -7.224 -0.392 -7.202 -2.336 -5.416 -1.185 -2.339 1.613 -1.723 D 24 20 6 25 6 0 10 942 2041 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 15 948 2046 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 16 948 2046 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 120 c g - - MP 27 26 6 31 6 3 18 947 2045 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -1.115 -2.492 -3.031 2.187 -2.980 -3.013 2.481 -3.353 -3.093 -0.160 -3.664 -1.112 1.116 -2.583 -1.191 -1.230 ML 28 26 6 31 6 1 14 945 2043 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 13 944 2043 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 10 942 2040 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 15 946 2044 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 15 946 2044 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 119 c g - - MP 33 32 6 37 4 3 17 945 2043 -10.067 -3.205 -0.171 -8.688 -3.396 0.174 -3.545 0.356 -3.586 -4.361 2.472 -3.900 -1.743 2.200 -1.851 -0.901 0.078 -1.182 -1.678 -2.746 ML 34 32 6 37 4 1 13 944 2042 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 11 942 2041 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 10 941 2039 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 15 945 2043 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 16 945 2044 -0.680 -1.444 -6.959 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 39 38 6 41 3 2 15 943 2041 -10.989 -0.003 -9.643 -1.349 1.773 -5.168 -2.616 D 40 38 6 41 3 0 9 940 2038 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 13 943 2041 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 42 41 3 44 3 2 14 942 2040 -10.989 -0.003 -9.643 -1.623 -1.870 -4.590 1.749 D 43 41 3 44 3 0 9 939 2037 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 13 942 2040 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 45 44 3 47 3 1 13 941 2039 -10.989 -0.003 -9.643 -5.686 -7.412 1.987 -6.439 D 46 44 3 47 3 0 8 938 2036 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 12 941 2039 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 48 47 3 50 3 1 12 940 2038 -10.989 -0.003 -9.643 1.949 -5.710 -5.650 -3.337 D 49 47 3 50 3 0 8 937 2036 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 11 940 2038 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - a - - - ML 51 50 3 53 3 1 11 939 2037 -10.989 -0.003 -9.643 0.862 0.465 -1.146 -1.511 D 52 50 3 53 3 0 8 936 2035 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 10 939 2037 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 54 53 3 56 3 1 10 938 2036 -10.989 -0.003 -9.643 -5.291 -3.766 1.958 -5.958 D 55 53 3 56 3 0 7 936 2034 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 10 938 2037 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 57 56 3 59 3 1 9 937 2035 -11.294 -0.002 -9.612 1.816 -3.640 -3.862 -1.603 D 58 56 3 59 3 0 7 935 2034 -5.620 -0.734 -1.403 IL 59 59 3 59 3 1 9 937 2035 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 115 - C - - MR 60 59 3 62 2 1 8 936 2034 -11.615 -0.000 -4.961 1.882 -2.893 -2.768 D 61 59 3 62 2 0 7 935 2033 -4.432 -0.068 IR 62 62 3 62 2 1 8 936 2034 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 63 62 3 64 111 0 7 935 2033 [ BEGL 16 ] - - - - - - S 64 63 1 65 4 0 0 923 2022 -0.009 -9.121 -8.529 -9.169 [ MATP 17 ] 14 99 G C - - MP 65 64 1 69 6 2 2 923 2022 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -8.660 -1.350 -9.941 -2.951 -10.263 -6.851 -4.757 -9.905 -6.973 3.838 -0.404 -1.651 -5.086 -7.247 -7.109 -8.824 ML 66 64 1 69 6 1 1 920 2019 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 1 69 6 1 1 920 2018 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 1 69 6 0 0 914 2013 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 922 2020 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 922 2020 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 98 u a - - MP 71 70 6 75 6 2 2 921 2020 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -7.600 -7.293 -7.130 2.736 -5.718 -7.508 -1.402 -6.502 -7.129 -3.620 -7.365 -5.021 2.993 -7.707 -0.328 -5.968 ML 72 70 6 75 6 1 1 919 2017 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 917 2016 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 913 2011 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 920 2018 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 920 2018 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 97 C G - - MP 77 76 6 81 6 2 2 919 2018 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -7.877 -8.143 -7.206 -4.365 0.272 -7.358 3.697 -6.475 -7.306 -4.328 -0.498 -6.512 -2.282 -7.718 -0.430 -6.107 ML 78 76 6 81 6 1 1 917 2015 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 915 2014 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 912 2010 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 918 2016 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 918 2016 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 96 c g - - MP 83 82 6 87 4 2 2 917 2016 -10.067 -10.274 -0.047 -5.056 -7.872 -8.135 -7.204 -4.357 -1.562 -7.357 2.990 -6.474 2.722 -4.319 -1.683 -6.498 -2.279 -7.714 -1.193 -6.104 ML 84 82 6 87 4 1 1 916 2014 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 4 1 1 912 2011 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 86 82 6 87 4 0 0 911 2009 -4.568 -4.250 -2.265 -0.520 IL 87 87 5 87 4 1 1 917 2015 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 88 88 6 88 3 1 1 916 2015 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - a - - - ML 89 88 6 91 3 1 1 915 2014 -10.949 -0.003 -9.603 0.796 0.783 -2.645 -1.382 D 90 88 6 91 3 0 0 908 2007 -7.788 -0.368 -2.180 IL 91 91 3 91 3 1 1 914 2012 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - A - - - ML 92 91 3 94 3 1 1 914 2013 -10.989 -0.810 -1.221 1.876 -2.993 -2.678 -4.379 D 93 91 3 94 3 0 0 880 1978 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 943 2041 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - G - - - ML 95 94 3 97 3 1 1 947 2045 -0.476 -1.842 -8.838 -2.319 -1.505 1.589 -1.189 D 96 94 3 97 3 0 0 502 1600 -11.227 -0.030 -5.619 IL 97 97 3 97 3 1 1 966 2064 -0.024 -5.920 -13.121 0.000 0.000 0.000 0.000 [ MATL 24 ] 92 - A - - - ML 98 97 3 100 3 1 1 14 33 -10.989 -0.003 -9.643 1.121 0.624 -2.420 -3.368 D 99 97 3 100 3 0 0 16 34 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 93 - A - - - ML 101 100 3 103 3 1 1 13 31 -10.989 -0.003 -9.643 1.936 -3.068 -5.293 -5.092 D 102 100 3 103 3 0 0 15 33 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 94 - U - - - ML 104 103 3 106 3 1 1 11 29 -10.989 -0.003 -9.643 -4.444 0.949 -5.482 1.001 D 105 103 3 106 3 0 0 13 32 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 95 - A - - - ML 107 106 3 109 2 1 1 1 1 * 0.000 1.877 -4.609 -2.581 -3.063 D 108 106 3 109 2 0 0 0 0 * 0.000 IL 109 109 3 109 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 110 109 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 111 63 1 112 3 0 0 33 64 -10.989 -0.003 -9.643 IL 112 112 2 112 3 1 1 35 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 100 - G - - - ML 113 112 2 115 3 1 1 33 64 -10.989 -0.003 -9.643 -4.973 -6.251 1.882 -1.893 D 114 112 2 115 3 0 0 31 62 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 34 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 101 - A - - - ML 116 115 3 118 3 1 1 32 62 -10.989 -0.020 -6.222 1.911 -4.858 -3.219 -3.375 D 117 115 3 118 3 0 0 30 60 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 33 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 102 - A - - - ML 119 118 3 121 5 1 1 31 62 -4.367 -0.076 -9.745 -9.958 -10.849 1.899 -4.679 -3.232 -2.990 D 120 118 3 121 5 0 0 29 59 -5.558 -0.478 -4.819 -3.194 -3.107 IL 121 121 3 121 5 1 1 35 65 -0.882 -1.215 -6.033 -7.865 -7.138 0.000 0.000 0.000 0.000 [ MATP 33 ] 106 114 A U - - MP 122 121 3 126 6 2 2 16 27 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -7.356 -6.038 -6.601 3.931 -9.557 -10.591 -5.135 -6.528 -7.121 -2.697 -7.776 -1.153 -5.082 -8.817 -6.948 -5.731 ML 123 121 3 126 6 1 1 16 28 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 3 126 6 1 1 16 28 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 3 126 6 0 0 14 26 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 18 29 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 17 28 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 107 113 C G - - MP 128 127 6 132 6 2 2 14 25 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -7.812 -8.042 -7.171 -4.230 -5.543 -7.342 3.737 0.035 -7.262 -4.172 -1.538 -6.330 -0.954 -7.670 -0.756 -6.060 ML 129 127 6 132 6 1 1 14 26 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 14 25 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 12 24 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 16 27 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 15 26 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 108 112 g c - - MP 134 133 6 138 6 2 2 11 22 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -4.975 -1.123 -4.869 0.331 -5.665 -1.984 -1.082 -5.467 -1.966 2.803 -5.534 -0.746 2.424 -4.771 -3.022 -3.872 ML 135 133 6 138 6 1 1 12 23 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 12 23 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 10 21 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 14 25 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 13 24 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 109 111 C G - - MP 140 139 6 144 3 2 2 8 15 -1.213 * -0.814 -3.820 -1.759 -1.786 -0.598 -0.633 -4.822 3.237 -0.611 -1.378 0.408 -4.553 -2.241 -0.029 -4.126 -0.328 -3.068 ML 141 139 6 144 3 1 1 7 14 -1.000 * -1.000 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 3 1 1 7 14 -1.000 * -1.000 0.368 -0.385 -0.191 0.094 D 143 139 6 144 3 0 0 6 13 -1.000 * -1.000 IL 144 144 5 144 3 1 1 6 13 -3.897 * -0.100 0.000 0.000 0.000 0.000 IR 145 145 6 145 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 146 145 6 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Hammerhead_1 ACC RF00163 DESC Hammerhead ribozyme (type I) LENG 46 MAXL 1024 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Apr 7 16:26:36 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED NSEQ 29 EFFN 29.000000 CKSUM 822789652 STATS LOCAL MSV -7.2434 0.72420 STATS LOCAL VITERBI -8.0368 0.72420 STATS LOCAL FORWARD -3.9333 0.72420 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23160 1.40725 1.36162 1.57448 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 0.00000 * 1 1.05150 0.79288 2.10623 2.57240 1 c - - ( 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 2 3.57334 2.35748 2.81121 0.20194 2 U - - ( 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 3 2.13788 0.94667 3.09051 0.80165 3 u - - ( 1.38629 1.38629 1.38629 1.38629 0.05509 5.74300 2.98777 1.46634 0.26236 1.09861 0.40547 4 4.19719 0.98552 3.95023 0.52346 4 U - - ( 1.38629 1.38629 1.38629 1.38629 0.00675 5.69466 5.69466 1.46634 0.26236 0.11973 2.18181 5 1.10187 0.99383 2.32825 1.60881 5 c - - ( 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 6 1.81855 1.02498 1.03243 2.09726 6 c - - ( 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 7 2.32168 0.15763 4.96854 3.19967 7 C - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 8 2.51100 2.68275 4.56816 0.17428 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 9 5.32753 6.52376 0.00925 5.84922 9 G - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 10 0.03510 5.34451 5.30287 3.69926 10 A - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 11 0.78913 1.06413 2.18044 2.43336 11 a - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 12 5.05359 3.99671 0.02921 5.51634 12 G - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 13 0.12729 3.90906 4.06325 2.49775 13 A - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 14 3.40084 5.71124 0.04079 5.70842 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 15 0.87362 3.64062 4.79136 0.60144 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 16 5.35572 0.12161 3.01897 2.79792 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 17 5.34129 0.65767 0.83205 3.17017 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03409 5.74300 3.49639 1.46634 0.26236 1.09861 0.40547 18 0.83459 0.84384 3.21993 2.34406 18 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00661 5.71553 5.71553 1.46634 0.26236 0.19187 1.74534 19 0.08607 3.46116 3.24250 4.42186 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.56145 5.74300 0.85234 1.46634 0.26236 1.09861 0.40547 20 2.99374 2.42928 0.28484 2.21031 20 G - - _ 1.38629 1.38629 1.38629 1.38629 1.25738 0.34243 5.19273 4.16835 0.01560 0.01492 4.21243 21 0.60942 0.95344 3.06389 3.72086 92 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 22 0.04450 3.51265 5.05530 4.91560 93 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 23 4.46679 0.72857 5.18579 0.69251 94 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 24 0.08550 4.58105 3.17510 3.50937 95 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 25 0.80650 5.39706 0.61064 5.10817 96 G - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 26 2.41270 5.40317 0.10546 5.11395 97 G - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 27 0.69505 5.01869 2.59499 0.86824 98 a - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 28 5.68031 0.08639 2.98559 3.54589 99 C - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 29 4.83346 5.71925 0.08180 2.69861 100 G - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 30 0.06141 4.75374 3.61727 3.72591 101 A - - , 1.38629 1.38629 1.38629 1.38629 0.01860 5.74300 4.18519 1.46634 0.26236 1.09861 0.40547 31 0.07025 4.62943 3.62627 3.45889 102 A - - , 1.38629 1.38629 1.38629 1.38629 0.05578 2.97569 5.73092 1.11586 0.39695 0.35150 1.21616 32 0.04794 5.74377 3.24245 5.39598 106 A - - < 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 33 5.25081 0.10882 3.62090 2.64356 107 C - - < 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 34 2.18897 3.02831 0.71320 1.05126 108 g - - < 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 35 2.48896 0.39844 2.09457 2.09955 109 C - - < 1.38629 1.38629 1.38629 1.38629 0.53231 0.89270 5.74300 0.01558 4.16960 1.09861 0.40547 36 2.03556 2.23109 0.41757 2.26975 111 G - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 37 1.03674 0.72936 3.18879 2.10413 112 c - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 38 3.34836 5.30979 0.11626 2.66400 113 G - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 39 5.58709 4.48087 5.55181 0.01913 114 U - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 40 4.82532 0.08164 3.39148 3.30471 115 C - - , 1.38629 1.38629 1.38629 1.38629 0.11871 2.21890 5.74300 1.10654 0.40153 1.09861 0.40547 41 2.32997 0.94969 0.94687 2.05660 119 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 42 1.70930 2.45034 0.94884 1.06260 120 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 43 0.77268 4.06315 0.76144 2.91805 121 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 44 0.93066 2.41528 1.00913 1.88500 122 a - - ) 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 45 0.10070 5.28008 2.47777 4.99427 123 A - - ) 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 46 2.80174 2.03993 0.87783 0.93249 124 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00322 5.73979 * 1.46634 0.26236 0.00000 * //