INFERNAL1/a [1.1.5 | Sep 2023] NAME nos_TCE ACC RF00161 DESC Nanos 3' UTR translation control element STATES 201 NODES 49 CLEN 64 W 80 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 15:15:11 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00161/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 9 EFFN 2.359863 CKSUM 3392515715 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 67.90 NC 46.00 EFP7GF -11.4224 0.71925 ECMLC 0.54958 -8.54709 2.02773 1600000 401019 0.002992 ECMGC 0.46677 -13.06625 -1.51445 1600000 87859 0.004553 ECMLI 0.56994 -6.01082 3.53774 1600000 277121 0.004330 ECMGI 0.47293 -9.52636 1.50466 1600000 73741 0.005424 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 0 1 80 100 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 IL 1 1 2 1 6 1 19 82 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 19 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 65 c g - - MP 3 2 3 7 6 2 20 80 100 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -0.445 -1.761 -0.897 1.283 -1.762 -2.623 1.458 -2.120 -1.845 1.261 -2.092 -0.031 1.421 -1.913 0.320 -1.034 ML 4 2 3 7 6 1 16 79 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 16 78 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 12 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 18 80 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 18 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 64 g c - - MP 9 8 6 13 6 2 18 78 98 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -2.899 -2.327 -2.954 1.335 -3.112 -3.690 0.946 -3.309 -3.097 2.719 -1.290 -0.233 0.944 -2.987 -0.890 -2.023 ML 10 8 6 13 6 1 15 77 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 15 77 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 12 74 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 16 78 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 16 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 63 g c - - MP 15 14 6 19 6 2 16 76 96 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -3.062 -2.362 -3.103 1.601 -3.386 -1.308 0.679 -3.523 -3.254 2.848 -3.678 -0.249 0.417 -3.081 -1.139 -2.182 ML 16 14 6 19 6 1 14 75 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 14 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 11 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 15 76 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 15 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 62 a u - - MP 21 20 6 25 4 2 14 74 94 -7.114 -7.321 -0.270 -2.669 -3.480 -2.863 -3.491 2.853 -3.228 -4.395 1.482 -3.506 -3.487 1.229 -3.966 -0.556 0.543 -3.771 -0.920 -2.406 ML 22 20 6 25 4 1 13 74 95 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 12 74 94 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 11 73 93 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 14 76 96 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 14 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 27 26 6 29 3 1 13 72 92 -7.919 -0.145 -3.453 0.022 -0.473 0.059 0.289 D 28 26 6 29 3 0 11 70 90 -7.397 -2.910 -0.216 IL 29 29 3 29 3 1 13 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - u - - - ML 30 29 3 32 3 1 12 71 91 -8.200 -0.240 -2.737 -0.051 0.281 -1.061 0.423 D 31 29 3 32 3 0 10 70 89 -6.792 -0.673 -1.459 IL 32 32 3 32 3 1 12 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 61 - U - - MR 33 32 3 35 3 1 11 70 90 -8.215 -0.021 -6.533 -0.181 -0.817 -1.223 1.086 D 34 32 3 35 3 0 10 69 88 -7.796 -0.944 -1.072 IR 35 35 3 35 3 1 11 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 60 - g - - MR 36 35 3 38 2 1 10 69 89 -8.417 -0.004 0.173 -0.819 0.693 -0.539 D 37 35 3 38 2 0 9 68 88 -5.143 -0.041 IR 38 38 3 38 2 1 10 70 90 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 9 ] - - - - - - B 39 38 3 40 99 0 9 68 88 [ BEGL 10 ] - - - - - - S 40 39 1 41 4 0 0 33 51 -0.098 -6.920 -4.332 -6.967 [ MATP 11 ] 7 25 a u - - MP 41 40 1 45 6 2 2 33 51 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -2.616 -2.525 -2.732 2.867 -2.724 -3.627 0.919 -1.348 -2.822 1.002 -3.363 -0.732 0.667 -2.921 -0.760 -0.863 ML 42 40 1 45 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 1 45 6 1 1 31 50 -7.415 -6.144 -2.053 -6.122 -0.567 -4.336 -0.115 -0.459 -0.727 0.803 D 44 40 1 45 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 24 g c - - MP 47 46 6 51 6 2 2 31 49 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -3.773 -2.571 -3.820 0.946 -4.484 -4.573 0.007 -4.125 -3.731 2.997 -4.167 1.674 -0.272 -3.915 -1.953 -2.693 ML 48 46 6 51 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 29 48 -7.415 -6.144 -1.007 -6.122 -1.256 -4.336 -0.088 0.509 -0.792 0.083 D 50 46 6 51 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 23 A U - - MP 53 52 6 57 6 2 2 29 47 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -4.079 -3.040 -4.073 3.490 -4.559 -5.652 -0.239 -4.095 -3.956 0.768 -4.518 -0.472 -0.655 -4.790 -2.179 -2.892 ML 54 52 6 57 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 22 A U - - MP 59 58 6 63 6 2 2 27 45 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -3.556 -2.558 -3.660 3.023 -4.331 -5.085 -0.084 -3.830 -3.516 1.360 -4.081 1.287 -0.325 -4.154 -1.971 -2.484 ML 60 58 6 63 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 21 G C - - MP 65 64 6 69 6 2 2 25 43 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -5.049 -3.242 -5.183 -0.008 -5.663 -4.811 -0.951 -5.443 -4.522 3.704 -4.838 -0.954 -1.329 -4.667 -3.006 -4.055 ML 66 64 6 69 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 20 C G - - MP 71 70 6 75 6 2 2 23 41 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -4.892 -4.827 -4.523 -1.031 -3.170 -4.889 3.644 -4.014 -4.585 -0.834 -4.807 -2.780 0.308 -4.937 -0.886 -3.414 ML 72 70 6 75 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 19 U A - - MP 77 76 6 81 4 2 2 21 39 -7.114 -7.321 -0.047 -5.735 -4.565 -4.398 -4.361 -0.668 -3.226 -4.890 1.108 -3.947 -4.363 -0.464 -4.717 -2.285 3.481 -4.701 -0.893 -3.146 ML 78 76 6 81 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 80 76 6 81 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 81 81 5 81 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 82 82 6 82 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - C - - - ML 83 82 6 85 3 1 1 17 36 -8.119 -0.018 -6.773 -2.122 1.713 -2.953 -1.460 D 84 82 6 85 3 0 0 17 36 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - U - - - ML 86 85 3 88 3 1 1 16 35 -8.119 -0.018 -6.773 -1.778 -1.724 -2.525 1.692 D 87 85 3 88 3 0 0 16 34 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - - - ML 89 88 3 91 3 1 1 15 33 -8.119 -0.018 -6.773 -1.909 -3.178 1.788 -2.565 D 90 88 3 91 3 0 0 15 33 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - G - - - ML 92 91 3 94 3 1 1 13 31 -8.119 -0.018 -6.773 -1.909 -3.178 1.788 -2.565 D 93 91 3 94 3 0 0 13 32 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - c - - - ML 95 94 3 97 2 1 1 1 1 * 0.000 -0.089 0.991 -1.535 -0.460 D 96 94 3 97 2 0 0 0 0 * 0.000 IL 97 97 3 97 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 23 ] - - - - - - E 98 97 3 -1 0 0 0 0 0 [ BEGR 24 ] - - - - - - S 99 39 1 100 3 0 0 48 68 -8.119 -0.018 -6.773 IL 100 100 2 100 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - u - - - ML 101 100 2 103 3 1 1 48 68 -8.119 -0.018 -6.773 -0.103 -0.917 0.183 0.490 D 102 100 2 103 3 0 0 47 66 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - a - - - ML 104 103 3 106 3 1 1 47 67 -8.119 -0.018 -6.773 0.531 0.182 -1.123 -0.057 D 105 103 3 106 3 0 0 46 65 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - A - - - ML 107 106 3 109 5 1 1 46 65 -7.230 -0.035 -7.045 -7.257 -8.149 1.779 -2.686 -2.287 -2.261 D 108 106 3 109 5 0 0 45 64 -4.959 -0.803 -4.221 -2.596 -2.508 IL 109 109 3 109 5 1 1 47 66 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 29 59 G C - - MP 110 109 3 114 6 2 2 45 64 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -5.049 -3.242 -5.183 -0.008 -5.663 -4.811 -0.951 -5.443 -4.522 3.704 -4.838 -0.954 -1.329 -4.667 -3.006 -4.055 ML 111 109 3 114 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 3 114 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 3 114 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 30 58 C G - - MP 116 115 6 120 6 2 2 43 62 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -4.892 -4.827 -4.523 -1.031 -3.170 -4.889 3.644 -4.014 -4.585 -0.834 -4.807 -2.780 0.308 -4.937 -0.886 -3.414 ML 117 115 6 120 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 57 G C - - MP 122 121 6 126 6 2 2 41 60 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -5.049 -3.242 -5.183 -0.008 -5.663 -4.811 -0.951 -5.443 -4.522 3.704 -4.838 -0.954 -1.329 -4.667 -3.006 -4.055 ML 123 121 6 126 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 56 c g - - MP 128 127 6 132 4 2 2 39 58 -3.601 -7.321 -0.164 -5.735 -2.704 -2.781 -2.800 0.587 -2.287 -3.567 1.936 -0.719 -2.828 0.678 -3.340 -1.065 1.913 -2.975 1.509 -1.866 ML 129 127 6 132 4 1 1 39 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 4 1 1 38 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 131 127 6 132 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 132 132 5 132 4 1 1 39 59 -2.139 -2.823 -0.722 -5.308 0.000 0.000 0.000 0.000 IR 133 133 6 133 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - U - - - ML 134 133 6 136 3 1 1 36 55 -8.500 -0.017 -6.818 -1.778 -1.724 -2.525 1.692 D 135 133 6 136 3 0 0 35 54 -5.620 -0.734 -1.403 IL 136 136 3 136 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 55 - U - - MR 137 136 3 139 5 1 1 35 54 -7.230 -0.035 -7.045 -7.257 -8.149 -1.778 -1.724 -2.525 1.692 D 138 136 3 139 5 0 0 34 53 -5.352 -0.707 -2.978 -4.409 -2.404 IR 139 139 3 139 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 54 U A - - MP 140 139 3 144 6 2 2 34 53 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -4.565 -4.398 -4.361 -0.668 -3.226 -4.890 1.108 -3.947 -4.363 -0.464 -4.717 -2.285 3.481 -4.701 -0.893 -3.146 ML 141 139 3 144 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 3 144 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 3 144 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 36 53 A U - - MP 146 145 6 150 6 2 2 32 51 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -4.079 -3.040 -4.073 3.490 -4.559 -5.652 -0.239 -4.095 -3.956 0.768 -4.518 -0.472 -0.655 -4.790 -2.179 -2.892 ML 147 145 6 150 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 37 52 U A - - MP 152 151 6 156 6 2 2 30 49 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -4.565 -4.398 -4.361 -0.668 -3.226 -4.890 1.108 -3.947 -4.363 -0.464 -4.717 -2.285 3.481 -4.701 -0.893 -3.146 ML 153 151 6 156 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 38 51 A U - - MP 158 157 6 162 6 2 2 28 47 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -4.079 -3.040 -4.073 3.490 -4.559 -5.652 -0.239 -4.095 -3.956 0.768 -4.518 -0.472 -0.655 -4.790 -2.179 -2.892 ML 159 157 6 162 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 39 50 U A - - MP 164 163 6 168 6 2 2 26 45 -9.173 -9.113 -0.020 -7.889 -8.169 -8.564 -4.565 -4.398 -4.361 -0.668 -3.226 -4.890 1.108 -3.947 -4.363 -0.464 -4.717 -2.285 3.481 -4.701 -0.893 -3.146 ML 165 163 6 168 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 40 49 A U - - MP 170 169 6 174 4 2 2 24 43 -7.114 -7.321 -0.047 -5.735 -4.079 -3.040 -4.073 3.490 -4.559 -5.652 -0.239 -4.095 -3.956 0.768 -4.518 -0.472 -0.655 -4.790 -2.179 -2.892 ML 171 169 6 174 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 173 169 6 174 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 174 174 5 174 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 175 175 6 175 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - - - ML 176 175 6 178 3 1 1 21 40 -8.119 -0.018 -6.773 1.061 -1.543 0.090 -0.984 D 177 175 6 178 3 0 0 20 39 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - u - - - ML 179 178 3 181 3 1 1 20 39 -8.119 -0.018 -6.773 -0.500 0.001 -0.855 0.799 D 180 178 3 181 3 0 0 19 38 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - a - - - ML 182 181 3 184 3 1 1 19 37 -8.119 -0.116 -3.768 0.503 0.484 -1.256 -0.385 D 183 181 3 184 3 0 0 18 37 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - A - - - ML 185 184 3 187 3 1 1 17 36 -8.024 -0.020 -6.678 1.384 -1.454 -1.412 -0.622 D 186 184 3 187 3 0 0 17 35 -6.907 -0.773 -1.299 IL 187 187 3 187 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - G - - - ML 188 187 3 190 3 1 1 16 35 -8.119 -0.018 -6.773 -1.909 -3.178 1.788 -2.565 D 189 187 3 190 3 0 0 16 34 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - A - - - ML 191 190 3 193 3 1 1 15 33 -8.119 -0.018 -6.773 1.441 -1.573 -1.531 -0.730 D 192 190 3 193 3 0 0 15 33 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - A - - - ML 194 193 3 196 3 1 1 13 31 -8.119 -0.018 -6.773 1.441 -1.573 -1.531 -0.730 D 195 193 3 196 3 0 0 13 32 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - A - - - ML 197 196 3 199 2 1 1 1 1 * 0.000 1.779 -2.686 -2.287 -2.261 D 198 196 3 199 2 0 0 0 0 * 0.000 IL 199 199 3 199 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 200 199 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME nos_TCE ACC RF00161 DESC Nanos 3' UTR translation control element LENG 64 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 15:15:11 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00161/CM NSEQ 9 EFFN 3.590332 CKSUM 3392515715 STATS LOCAL MSV -8.1664 0.71925 STATS LOCAL VITERBI -8.7352 0.71925 STATS LOCAL FORWARD -4.0421 0.71925 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27011 1.61456 1.44505 1.25707 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 0.00000 * 1 1.33710 1.58415 1.42803 1.22933 1 u - - ( 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 2 1.69512 2.18271 0.60423 1.85029 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 3 1.47971 2.11693 0.60431 2.24961 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 4 0.56070 1.72832 1.93070 2.23904 4 A - - ( 1.38629 1.38629 1.38629 1.38629 0.20031 4.12200 1.79990 1.46634 0.26236 1.09861 0.40547 5 1.40666 1.73640 1.28921 1.19271 5 u - - , 1.38629 1.38629 1.38629 1.38629 0.14309 3.96054 2.16921 1.46634 0.26236 2.50119 0.08554 6 1.46671 1.11498 2.23999 1.09382 6 u - - , 1.38629 1.38629 1.38629 1.38629 0.04303 3.86048 3.86048 1.46634 0.26236 0.48725 0.95273 7 0.52412 2.06563 1.99281 1.93188 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.03569 4.04394 4.04394 1.46634 0.26236 2.03231 0.14045 8 2.12748 2.96997 0.26214 2.81086 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03569 4.04394 4.04394 1.46634 0.26236 0.30390 1.33916 9 0.18225 3.43597 2.31480 3.33456 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 10 0.48393 3.23037 1.22315 2.99978 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 11 2.92258 3.74455 0.10827 3.68196 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 12 3.73388 0.13961 3.57510 2.54601 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 13 3.60218 2.40381 3.42246 0.16284 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 14 3.46714 0.10996 4.02546 2.89922 14 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 15 3.10727 2.98967 3.64025 0.12928 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 16 3.21342 4.15160 0.08367 3.71703 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 17 3.21342 4.15160 0.08367 3.71703 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 18 1.51923 0.56582 2.73797 1.90702 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 19 0.18546 3.60767 2.23793 3.33862 19 A - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 20 2.81594 3.72505 0.12157 3.48974 20 G - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 21 3.79832 0.13308 3.56655 2.60446 21 C - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 22 3.15543 2.09712 2.99517 0.24266 22 U - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 23 3.43186 2.64698 3.18752 0.15603 23 U - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 24 2.93343 0.63452 2.74963 1.04229 24 C - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 25 2.28891 2.15625 2.07206 0.42016 25 U - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 26 1.51548 2.14293 1.19674 1.01941 26 u - - , 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 27 0.98293 1.19592 2.31071 1.49534 27 a - - , 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 28 0.08912 3.75838 3.43526 3.51570 28 A - - , 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 29 2.93561 3.76311 0.10631 3.70714 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 30 3.75879 0.13808 3.58861 2.55075 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 31 2.92978 3.75479 0.10719 3.69583 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 32 2.31149 1.23642 2.15725 0.70356 32 u - - < 1.38629 1.38629 1.38629 1.38629 0.12041 2.33067 4.12200 0.30550 1.33466 1.09861 0.40547 33 3.10727 2.98967 3.64025 0.12928 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 34 3.61722 2.40535 3.43036 0.16189 35 U - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 35 0.18173 3.44023 2.31585 3.34015 36 A - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 36 3.61498 2.40512 3.42919 0.16203 37 U - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 37 0.18193 3.43857 2.31544 3.33796 38 A - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 38 3.61107 2.40472 3.42714 0.16228 39 U - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 39 0.18214 3.43691 2.31503 3.33580 40 A - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 40 0.57495 2.73370 1.27852 2.36618 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 41 1.87264 1.34898 2.03209 0.78588 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 42 1.00146 0.95359 2.46293 1.81944 43 c - - _ 1.38629 1.38629 1.38629 1.38629 0.11254 4.12200 2.40544 1.46634 0.26236 1.09861 0.40547 43 0.33939 2.61815 2.61195 1.95567 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03564 4.04511 4.04511 1.46634 0.26236 0.30702 1.33043 44 3.21342 4.15160 0.08367 3.71703 45 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 45 0.30249 2.72510 2.72043 2.04299 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 46 0.30249 2.72510 2.72043 2.04299 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 47 0.08912 3.75838 3.43526 3.51570 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 48 3.55200 2.66866 3.24334 0.14739 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 49 0.18413 3.62096 2.24022 3.35291 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 50 3.55796 2.66968 3.24601 0.14699 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 51 0.18366 3.62572 2.24104 3.35804 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 52 3.56899 2.67156 3.25094 0.14626 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 53 0.18273 3.63515 2.24265 3.36820 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 54 3.10727 2.98967 3.64025 0.12928 55 U - - - 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 55 1.28513 2.32695 0.77172 1.81048 56 g - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 56 3.86776 0.12918 3.60095 2.61761 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 57 2.83228 3.75099 0.11879 3.51873 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 58 3.87472 0.12880 3.60433 2.61888 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.12041 4.12200 2.33067 1.46634 0.26236 1.09861 0.40547 59 1.31037 2.01711 0.79422 1.92889 60 g - - , 1.38629 1.38629 1.38629 1.38629 0.20531 4.03751 1.78403 1.46634 0.26236 2.07912 0.13358 60 1.59733 2.10692 2.42014 0.53266 61 U - - , 1.38629 1.38629 1.38629 1.38629 0.04241 3.87462 3.87462 1.46634 0.26236 0.12906 2.11132 61 2.49094 2.15774 1.61547 0.50620 62 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 62 2.50128 0.61995 2.20292 1.31094 63 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 63 2.04728 0.73426 1.80768 1.48272 64 c - - ) 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 64 1.36358 1.67548 1.20479 1.35758 65 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01662 4.10566 * 1.46634 0.26236 0.00000 * //