# STOCKHOLM 1.0
#=GF ID SNORD34
#=GF AC RF00147
#=GF DE Small nucleolar RNA SNORD34
#=GF AU Moxon SJ; 0000-0003-4644-1816
#=GF GA 38.0
#=GF NC 37.9
#=GF TC 38.0
#=GF PI U34
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; PFOLD, Griffiths-Jones SR
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 26.84 -Z 2958934 CM SEQDB
#=GF CL CL00055
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Mus_musculus300754;
#=GF DR snoopy; Loxodonta_africana300497;
#=GF RN [1]
#=GF RM 12215523
#=GF RT Purified box C/D snoRNPs are able to reproduce site-specific
#=GF RT 2'-O-methylation of target RNA in vitro.
#=GF RA Galardi S, Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I
#=GF RL Mol Cell Biol 2002;22:6663-6668.
#=GF RN [2]
#=GF RM 12736310
#=GF RT The high diversity of snoRNAs in plants: identification and comparative
#=GF RT study of 120 snoRNA genes from Oryza sativa.
#=GF RA Chen CL, Liang D, Zhou H, Zhuo M, Chen YQ, Qu LH
#=GF RL Nucleic Acids Res 2003;31:2601-2613.
#=GF CC snoRNA U34 is found in intron 5 of the ribosomal protein L13a gene in
#=GF CC humans. U34 is a member of the C/D class of snoRNA which contain C
#=GF CC (UGAUGA) and D (CUGA) box motifs, and functions in directing site-specific
#=GF CC 2'-O-methylation of 25S rRNAs. Although the selection of the target
#=GF CC nucleotide requires the antisense element and the conserved box D or D' of
#=GF CC the snoRNA, the methyltransferase activity is thought to reside in one of
#=GF CC the protein components [1]. U34 snoRNA has homologues in mouse,
#=GF CC Arabidopsis (annotated as snoR4) and in several copies in rice
#=GF CC (alternatively named snoZ181) [2]. This family also contains a putative
#=GF CC homologue in Drosophila (Griffiths-Jones SR, pers. obs.).
#=GF WK Small_nucleolar_RNA_SNORD34
#=GF SQ 14

AJ490415.1/1-86      UGAUGCCUAUGAUGACUUGCAAGAU-UAUUGCCUACAUUGUUUGACAAGUAUCUUUGUGAUAUU-AAUUG--CAAGUA----CCUGAGGCUUGA
X51528.1/3627-3692   ---CGUCUGUGAUGUUCUGC------UAUUACCUACAUUGUUUGAGCCUCAU----GAAAACC---------CCACUG----GCUGAGACGC--
Z69624.1/1-66        ---CGUCUGUGAUGUUCUGC------UAUUACCUACAUUGUUUGAUGCUCAU----GAAAGAA---------CCACUG----GCUGAGACGC--
AJ490417.1/3-83      UUUA-CCUAUGAUGAGUUGCGAAAUUUAUUGCCUACAUUGUUUGAUUAACCU----GUGAGAAA-AUUUG--CAACAU-----CUGAGGAUAAA
AJ490418.1/3-83      UUUA-CCUAUGAUGAGUUGUGAAAUUUAUUGCCUACAUUGUUUGACUAACCU----GUGAGAAA-AUUUG--CAACAU-----CUGAGGAUAAA
AJ490420.1/1-84      UUCUGCCAAUGAUGAGUUGCAACAU-UAUUGCCUACAUUGUUUGACAAACAAAUUCAUGAUAAA-AAA-G--CAACAA-----CUGAGGCUUAA
AB028893.1/4087-4152 ---CGUCCAUGAUGUUCCGCAAC------UACCUACAUUGUUUGAUCCUCAU----GAAAGCA---------GCACUG----GCUGAGACGC--
AJ490419.1/2-84      UUUAACCUAUGAUGAGUUGCAAAAUUUAUUGCCUACAUUGUUUGACUAACCU----GUGAGAAACAAUUG--CAACAU-----CUGAGGAUAAA
AJ490416.1/2-87      CUCUGCUUAUGAUGAGUUGCAAUAUCUUUUGCCUACAUUGUCUGACAAAUGUUGUCAUGAUAAU-AUUUG--CAACCU-----CUGAGGCAUAA
FM991913.1/3-63      -----UCUGUGAUGUUCUGC------UAUUACCUACAUUGUUUGAGCCUCAU----GAAAACC---------CCACUG----GCUGAGA-----
X94600.1/100-170     UGGCGUCCAUGAUGUUCCGCAAC------UACCUACAUUGUUUGAUCCUCAU----GAAAGCA---------GCACUG----GCUGAGACGCCA
AF317962.1/1-82      A-AGGCCUAUGAUGAUU--CAAA---UUUUGCCUACAUUGUUUGAUAAACCA----AUGAUAUA-ACUUGUACAAAAUGUUUUCUGAGGCCU-U
JN899108.1/1-65      ---CGUCCGUGAUGUUCCGC------GAUUACCUACAUUGUUUGAUCCUCAU----GAAAACA---------GCACUG----GCUGAGACG---
EU094083.1/1-74      AG-GGCCGAUGAUGCUGUUCAA------UUACCUACAUUGUUUGAUUUUCCU----GUGAGAAA-ACA-G--CUAUAU-----CUGAGGCCCCU
#=GC SS_cons         <<-<<<<________________...__________________________....________.___._..______...._____>>>>->>
#=GC RF              uuucGcCuAUGAUGauuUGCAAa...UAUUaCCUACAUUGUUUGAuuauCaU....GugAgAAa.AuU.G..CaAcuu....gCUGAGgCguaa
//
