INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-30 ACC RF00131 DESC mir-30 microRNA precursor STATES 184 NODES 41 CLEN 60 W 81 ALPH RNA RF no CONS yes MAP yes DATE Mon Mar 28 15:02:34 2022 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.8/microrna/update_old_rfam_mirnas/RF00131/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 49 EFFN 3.908875 CKSUM 1328482849 NULL 0.000 0.000 0.000 0.000 GA 50.20 TC 50.30 NC 50.00 EFP7GF -12.2498 0.71958 ECMLC 0.63254 -4.94371 4.11251 1600000 368993 0.003252 ECMGC 0.46770 -13.61552 -1.02031 1600000 144681 0.002765 ECMLI 0.62139 -4.20745 4.79495 1600000 322571 0.003720 ECMGI 0.49427 -9.51070 1.87596 1600000 111251 0.003595 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 81 106 -7.591 -7.799 -0.034 -6.213 IL 1 1 2 1 4 1 4 84 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 4 83 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 4 81 106 -8.928 -0.013 -7.246 -2.636 -2.442 -3.408 1.832 D 4 2 3 5 3 0 0 79 104 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 2 81 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 64 - u - - MR 6 5 3 8 5 1 4 80 105 -7.635 -0.027 -7.450 -7.663 -8.554 0.504 -0.939 -1.103 0.674 D 7 5 3 8 5 0 0 78 103 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 1 80 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 63 G C - - MP 9 8 3 13 6 2 5 79 104 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -5.900 -3.665 -6.214 -0.624 -6.829 -5.121 -1.908 -6.465 -5.007 3.825 -5.279 -1.431 -2.271 -5.202 -4.026 -5.075 ML 10 8 3 13 6 1 1 77 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 77 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 74 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 1 78 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 78 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 62 u g - - MP 15 14 6 19 6 2 5 77 102 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -4.491 -4.527 -4.239 -0.801 -2.993 -4.683 1.324 -3.776 -4.273 -0.665 -4.590 -2.602 2.506 -4.576 2.541 -3.137 ML 16 14 6 19 6 1 1 75 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 75 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 72 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 76 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 76 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 61 A U - - MP 21 20 6 25 6 2 4 75 100 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -4.960 -3.757 -4.814 3.762 -5.845 -7.073 -1.468 -4.777 -4.754 -0.199 -5.353 -1.092 -1.869 -6.006 -3.400 -3.646 ML 22 20 6 25 6 1 1 73 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 73 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 70 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 74 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 74 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 60 A U - - MP 27 26 6 31 6 2 4 73 98 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -4.960 -3.757 -4.814 3.762 -5.845 -7.073 -1.468 -4.777 -4.754 -0.199 -5.353 -1.092 -1.869 -6.006 -3.400 -3.646 ML 28 26 6 31 6 1 1 71 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 71 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 68 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 72 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 72 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 59 A U - - MP 33 32 6 37 6 2 4 71 96 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -4.960 -3.757 -4.814 3.762 -5.845 -7.073 -1.468 -4.777 -4.754 -0.199 -5.353 -1.092 -1.869 -6.006 -3.400 -3.646 ML 34 32 6 37 6 1 1 69 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 69 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 66 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 70 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 70 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 58 C G - - MP 39 38 6 43 6 2 4 69 94 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -5.900 -5.920 -5.343 -2.088 -3.832 -5.576 3.819 -4.782 -5.474 -1.980 -5.552 -3.927 -0.499 -5.875 -1.609 -4.282 ML 40 38 6 43 6 1 1 67 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 67 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 64 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 68 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 68 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 57 A U - - MP 45 44 6 49 6 2 4 67 92 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -4.960 -3.757 -4.814 3.762 -5.845 -7.073 -1.468 -4.777 -4.754 -0.199 -5.353 -1.092 -1.869 -6.006 -3.400 -3.646 ML 46 44 6 49 6 1 1 65 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 65 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 62 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 66 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 66 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 56 U A - - MP 51 50 6 55 6 2 3 65 90 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -4.181 -4.191 -4.202 -0.723 -3.507 -4.902 0.637 -4.106 -4.223 -0.561 -4.696 -2.362 3.525 -1.020 -1.276 -3.100 ML 52 50 6 55 6 1 1 63 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 63 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 60 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 64 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 64 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 55 C G - - MP 57 56 6 61 6 2 3 63 88 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -5.900 -5.920 -5.343 -2.088 -3.832 -5.576 3.819 -4.782 -5.474 -1.980 -5.552 -3.927 -0.499 -5.875 -1.609 -4.282 ML 58 56 6 61 6 1 1 61 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 61 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 59 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 62 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 62 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 54 c g - - MP 63 62 6 67 4 2 2 61 86 -7.591 -7.799 -0.034 -6.213 -2.513 -2.670 -2.659 0.468 0.112 -1.644 2.835 -1.439 -2.708 0.423 -3.245 -1.155 0.987 -2.821 -0.386 -1.827 ML 64 62 6 67 4 1 1 60 85 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 1 60 85 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 0 59 84 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 1 62 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 1 61 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - U - - - ML 69 68 6 71 3 1 1 59 84 -8.570 -0.014 -7.224 -1.344 0.096 -2.139 1.208 D 70 68 6 71 3 0 0 57 82 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 60 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - c - - - ML 72 71 3 74 5 1 1 58 83 -7.635 -0.203 -7.450 -3.087 -8.554 0.134 0.455 -1.409 0.209 D 73 71 3 74 5 0 0 56 81 -4.959 -0.803 -4.221 -2.596 -2.508 IL 74 74 3 74 5 1 1 58 83 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 53 G C - - MP 75 74 3 79 6 2 2 57 82 -9.293 -9.232 -0.019 -8.009 -8.289 -8.684 -3.432 -2.603 -3.424 0.930 -0.746 -4.093 0.722 -3.766 -3.581 3.055 -3.988 -0.168 0.387 -3.413 -1.222 -2.421 ML 76 74 3 79 6 1 1 55 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 55 80 -7.908 -6.637 -2.546 -6.615 -0.379 -4.829 -0.543 -0.733 -1.203 1.187 D 78 74 3 79 6 0 0 52 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 56 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 56 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 52 A U - - MP 81 80 6 85 6 2 2 55 80 -9.293 -9.232 -0.019 -8.009 -8.289 -8.684 -0.118 -2.806 -3.495 3.246 -3.795 -4.668 0.051 -3.698 -3.472 0.894 -4.033 -0.505 -0.204 -3.865 -1.696 -2.495 ML 82 80 6 85 6 1 1 53 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 53 78 -7.908 -6.637 -0.637 -6.615 -1.749 -4.829 -0.444 -1.440 1.224 -0.836 D 84 80 6 85 6 0 0 50 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 54 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 54 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 51 C G - - MP 87 86 6 91 6 2 2 53 78 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -5.900 -5.920 -5.343 -2.088 -3.832 -5.576 3.819 -4.782 -5.474 -1.980 -5.552 -3.927 -0.499 -5.875 -1.609 -4.282 ML 88 86 6 91 6 1 1 51 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 51 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 48 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 52 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 52 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 50 u a - - MP 93 92 6 97 6 2 2 51 76 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 0.459 -3.223 -3.288 0.178 -2.739 -4.052 1.319 -3.273 -3.309 0.258 -3.805 -1.398 2.958 -3.501 -0.580 -2.332 ML 94 92 6 97 6 1 1 49 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 49 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 46 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 50 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 50 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 18 49 G C - - MP 99 98 6 103 6 2 2 49 74 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -4.158 -3.098 -4.067 0.486 -3.966 -4.566 1.671 -4.233 -4.150 3.125 -4.494 -0.794 0.097 -4.031 -1.458 -2.972 ML 100 98 6 103 6 1 1 47 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 47 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 44 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 48 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 48 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 19 48 g u - - MP 105 104 6 109 6 2 2 47 72 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -3.662 -2.885 -3.784 0.263 -3.275 -4.300 1.003 -3.644 -3.602 0.656 -3.941 2.638 0.751 -3.949 1.275 -2.650 ML 106 104 6 109 6 1 1 45 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 45 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 42 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 46 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 46 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 20 47 a u - - MP 111 110 6 115 6 2 2 45 70 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -3.864 -3.406 -3.846 2.799 -3.262 -4.649 2.131 -3.724 -3.830 0.603 -4.288 -1.152 0.478 -4.128 -0.947 -2.740 ML 112 110 6 115 6 1 1 43 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 43 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 40 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 44 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 44 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 21 46 A U - - MP 117 116 6 121 6 2 2 43 68 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -4.960 -3.757 -4.814 3.762 -5.845 -7.073 -1.468 -4.777 -4.754 -0.199 -5.353 -1.092 -1.869 -6.006 -3.400 -3.646 ML 118 116 6 121 6 1 1 41 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 41 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 38 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 42 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 42 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 22 45 G C - - MP 123 122 6 127 6 2 2 41 66 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -5.900 -3.665 -6.214 -0.624 -6.829 -5.121 -1.908 -6.465 -5.007 3.825 -5.279 -1.431 -2.271 -5.202 -4.026 -5.075 ML 124 122 6 127 6 1 1 39 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 39 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 37 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 40 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 40 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 23 44 C G - - MP 129 128 6 133 6 2 2 39 64 -9.388 -9.327 -0.017 -8.104 -8.383 -8.778 -5.900 -5.920 -5.343 -2.088 -3.832 -5.576 3.819 -4.782 -5.474 -1.980 -5.552 -3.927 -0.499 -5.875 -1.609 -4.282 ML 130 128 6 133 6 1 1 38 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 37 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 35 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 38 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 38 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 24 43 u a - - MP 135 134 6 139 4 2 2 37 62 -7.591 -7.799 -0.034 -6.213 -4.419 -4.447 -4.192 -0.721 -2.978 -4.660 1.343 -3.749 -4.222 -0.581 -4.553 -2.512 2.669 -4.517 2.325 -3.090 ML 136 134 6 139 4 1 1 36 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 36 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 35 60 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 38 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 37 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - G - - - ML 141 140 6 143 3 1 1 35 60 -8.570 -0.014 -7.224 -2.783 -4.151 1.892 -3.517 D 142 140 6 143 3 0 0 33 58 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 36 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 26 - U - - - ML 144 143 3 146 3 1 1 34 59 -8.570 -0.014 -7.224 -1.280 -1.493 -1.126 1.472 D 145 143 3 146 3 0 0 32 57 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 35 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 27 - a - - - ML 147 146 3 149 3 1 1 33 58 -8.570 -0.014 -7.224 0.608 -1.145 0.451 -0.606 D 148 146 3 149 3 0 0 31 56 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 34 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - a - - - ML 150 149 3 152 3 1 1 32 57 -8.570 -0.014 -7.224 0.910 -0.867 -0.117 -0.619 D 151 149 3 152 3 0 0 30 55 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 33 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - u - - - ML 153 152 3 155 3 1 1 31 56 -8.570 -0.014 -7.224 0.297 -0.621 -0.189 0.315 D 154 152 3 155 3 0 0 29 54 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 32 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - a - - - ML 156 155 3 158 3 1 1 30 55 -8.570 -0.014 -7.224 0.707 -0.873 -0.316 0.027 D 157 155 3 158 3 0 0 28 53 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 31 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - c - - - ML 159 158 3 161 3 1 1 29 54 -8.570 -0.014 -7.224 -0.281 0.572 -1.012 0.255 D 160 158 3 161 3 0 0 27 52 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 30 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 32 - a - - - ML 162 161 3 164 3 1 1 28 53 -8.570 -0.014 -7.224 0.684 -0.716 -0.158 -0.170 D 163 161 3 164 3 0 0 25 50 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 29 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 33 - u - - - ML 165 164 3 167 3 1 1 27 52 -2.005 -0.626 -3.278 -0.295 -0.153 -0.285 0.551 D 166 164 3 167 3 0 0 22 47 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 27 52 -1.061 -0.997 -5.672 0.000 0.000 0.000 0.000 [ MATL 35 ] 38 - g - - - ML 168 167 3 170 3 1 1 17 36 -8.424 -0.015 -7.078 0.442 -1.055 0.497 -0.415 D 169 167 3 170 3 0 0 16 35 -7.411 -2.924 -0.214 IL 170 170 3 170 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - g - - - ML 171 170 3 173 3 1 1 16 34 -8.424 -0.015 -7.078 0.251 -0.690 0.451 -0.281 D 172 170 3 173 3 0 0 15 34 -7.411 -0.832 -1.210 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 40 - a - - - ML 174 173 3 176 3 1 1 14 33 -8.535 -0.014 -7.189 0.598 -0.339 -0.428 -0.071 D 175 173 3 176 3 0 0 14 33 -6.600 -1.467 -0.671 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - u - - - ML 177 176 3 179 3 1 1 13 31 -8.553 -0.014 -7.207 0.228 -0.533 -0.408 0.469 D 178 176 3 179 3 0 0 13 32 -6.398 -1.911 -0.469 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - g - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 0.235 -1.070 0.494 -0.092 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-30 ACC RF00131 DESC mir-30 microRNA precursor LENG 60 MAXL 135 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Mar 28 15:02:34 2022 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 49 EFFN 6.116028 CKSUM 1328482849 STATS LOCAL MSV -8.0804 0.71958 STATS LOCAL VITERBI -8.6122 0.71958 STATS LOCAL FORWARD -3.5026 0.71958 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40718 1.56724 1.35170 1.24567 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 0.00000 * 1 3.77535 3.56606 4.32083 0.06666 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 2 3.41358 4.40069 0.05957 4.37093 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 3 3.68669 2.12939 3.52825 0.19034 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 4 0.08253 4.30511 2.99694 4.14893 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 5 0.08275 4.30071 2.99581 4.14362 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 6 0.08291 4.29745 2.99497 4.13970 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 7 4.49463 0.06514 4.41235 3.22480 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 8 0.08314 4.29298 2.99381 4.13431 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 9 3.59963 2.49733 3.43021 0.15317 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 10 4.48432 0.06543 4.40603 3.22268 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 11 2.57000 0.37085 2.47169 1.90467 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 12 2.70917 1.28725 3.27820 0.47855 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 13 1.30572 0.98762 2.57434 1.27169 13 c - - - 1.38629 1.38629 1.38629 1.38629 0.17229 4.42149 1.92242 1.46634 0.26236 1.09861 0.40547 14 2.14830 2.10776 0.38786 2.48525 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.02815 4.27735 4.27735 1.46634 0.26236 2.65121 0.07318 15 0.22106 3.29891 2.14686 3.11093 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.02815 4.27735 4.27735 1.46634 0.26236 0.15214 1.95806 16 4.46472 0.06600 4.39394 3.21861 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 17 1.77187 2.11709 2.86026 0.42718 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 18 2.55757 1.53444 0.45454 2.62844 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 19 2.93094 2.38572 0.55248 1.27615 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 20 0.60945 1.22597 2.57834 2.44209 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 21 0.08378 4.28011 2.99046 4.11884 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 22 3.38720 4.35728 0.06191 4.31164 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 23 4.46606 0.06596 4.39477 3.21889 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 24 3.61424 2.11521 3.46123 0.19715 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 25 3.83290 4.83143 0.04351 4.34617 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 26 2.67500 2.76608 2.24148 0.27196 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 27 0.93983 2.30701 0.99660 1.96171 27 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 28 0.69535 2.04847 1.44895 1.98522 28 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 29 1.17530 1.86739 1.49806 1.16097 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 30 0.85505 2.08071 1.60668 1.38892 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 31 1.66419 0.90291 2.16912 1.23447 31 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 32 0.87392 1.92843 1.47955 1.56269 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 33 1.68242 1.47284 1.55437 0.98489 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.50500 1.27374 2.14804 0.79905 0.59739 1.09861 0.40547 34 1.07516 2.23382 0.95754 1.78498 38 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02721 4.31090 4.31090 1.46634 0.26236 2.46068 0.08924 35 1.22753 1.90261 0.99336 1.67411 39 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02721 4.31090 4.31090 1.46634 0.26236 0.44476 1.02437 36 0.93953 1.61203 1.69387 1.48767 40 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02500 4.39463 4.39463 1.46634 0.26236 0.89526 0.52510 37 1.22687 1.79873 1.66725 1.04266 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40844 4.40844 1.46634 0.26236 1.40582 0.28126 38 1.23694 2.26154 0.96573 1.49238 42 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02465 4.40844 4.40844 1.46634 0.26236 0.67400 0.71267 39 0.79156 3.61550 0.72210 3.37467 43 g - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 40 3.48492 4.54037 0.05691 4.26899 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 41 4.39559 0.07648 4.21981 3.06622 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 42 4.28318 3.39051 4.07087 0.06673 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 43 2.69131 2.81228 1.16763 0.57797 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 44 2.38764 2.89155 1.27883 0.55460 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 45 2.84980 0.49431 1.47289 2.27410 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 46 0.29501 3.02985 1.94543 2.74528 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 47 3.29423 4.22285 0.07400 3.93370 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 48 2.14428 2.51543 2.12608 0.38168 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 49 2.18082 0.56603 2.41740 1.46914 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 50 1.53142 2.33142 0.56469 2.13641 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 51 3.49569 4.55962 0.05605 4.28953 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 52 0.22774 2.63275 2.33103 3.36403 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 53 4.33563 3.40126 4.09827 0.06510 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 54 3.50033 4.56795 0.05568 4.29842 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 55 4.34653 3.40344 4.10388 0.06477 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 56 4.35487 3.40509 4.10815 0.06452 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 57 4.36651 3.40738 4.11408 0.06418 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 58 0.92089 3.68735 0.60727 3.44318 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 59 4.52265 0.07273 4.28799 3.08888 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.02433 4.42149 4.42149 1.46634 0.26236 1.09861 0.40547 60 0.99814 2.18070 2.27084 0.87888 64 u - - : 1.38629 1.38629 1.38629 1.38629 0.01224 4.40940 * 1.46634 0.26236 0.00000 * //