INFERNAL1/a [1.1.5 | Sep 2023] NAME rydB ACC RF00118 DESC rydB RNA STATES 192 NODES 55 CLEN 61 W 89 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 19:19:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00118/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 2.765137 CKSUM 4101640097 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 50.50 NC 48.40 EFP7GF -11.4047 0.71920 ECMLC 0.71157 -5.29791 2.47531 1600000 302938 0.003961 ECMGC 0.45013 -17.69049 -5.52177 1600000 95698 0.004180 ECMLI 0.67026 -3.87833 3.77296 1600000 202493 0.005926 ECMGI 0.48760 -13.23598 -2.69227 1600000 68365 0.005851 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 89 123 -7.255 -7.462 -0.350 -2.298 IL 1 1 2 1 4 2 25 92 126 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 25 91 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 24 89 123 -3.432 -0.300 -3.395 -1.600 -2.823 1.728 -2.210 D 4 2 3 5 3 0 22 88 123 -1.923 -0.824 -2.544 IL 5 5 3 5 3 1 25 89 124 -2.602 -0.321 -4.840 0.000 0.000 0.000 0.000 [ MATR 2 ] - 69 - u - - MR 6 5 3 8 3 2 25 88 122 -8.518 -0.017 -6.836 -0.850 0.509 -1.645 0.768 D 7 5 3 8 3 0 19 86 120 -7.168 -2.346 -0.329 IR 8 8 3 8 3 1 24 89 123 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 68 - u - - MR 9 8 3 11 3 2 25 87 121 -8.518 -0.017 -6.836 0.199 -0.009 -1.113 0.481 D 10 8 3 11 3 0 19 85 119 -7.168 -2.346 -0.329 IR 11 11 3 11 3 1 23 88 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 67 - u - - MR 12 11 3 14 3 2 24 86 120 -8.518 -0.017 -6.836 0.495 -0.924 -1.157 0.692 D 13 11 3 14 3 0 18 84 118 -7.168 -2.346 -0.329 IR 14 14 3 14 3 1 23 87 121 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 66 - a - - MR 15 14 3 17 3 2 23 85 119 -8.518 -0.017 -6.836 0.323 -0.039 -0.063 -0.289 D 16 14 3 17 3 0 18 83 117 -7.168 -2.346 -0.329 IR 17 17 3 17 3 1 22 86 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 65 - A - - MR 18 17 3 20 3 1 23 84 118 -8.518 -0.017 -6.836 1.342 -0.832 -1.412 -0.923 D 19 17 3 20 3 0 18 83 117 -7.168 -0.705 -1.398 IR 20 20 3 20 3 1 21 85 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 64 - u - - MR 21 20 3 23 3 1 22 83 117 -8.625 -0.015 -6.943 0.239 -0.168 -0.577 0.333 D 22 20 3 23 3 0 16 81 115 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 20 84 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 63 - a - - MR 24 23 3 26 3 1 22 82 116 -8.625 -0.015 -6.943 0.506 -0.274 -0.014 -0.390 D 25 23 3 26 3 0 15 80 115 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 20 83 117 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 62 - c - - MR 27 26 3 29 5 1 21 81 115 -7.347 -0.033 -7.163 -7.375 -8.266 0.159 0.316 -1.215 0.272 D 28 26 3 29 5 0 15 80 114 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 18 81 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 3 61 C G - - MP 30 29 3 34 6 2 21 80 114 -9.233 -9.172 -0.019 -7.948 -8.228 -8.623 -4.235 -4.189 -4.000 -0.359 -2.750 -4.475 3.229 -3.522 -4.014 -0.154 -4.346 -2.137 1.684 -4.319 -0.410 -2.846 ML 31 29 3 34 6 1 16 79 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 16 78 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 12 75 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 18 80 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 18 79 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 4 60 C G - - MP 36 35 6 40 6 2 20 78 112 -9.233 -9.172 -0.019 -7.948 -8.228 -8.623 -5.187 -5.146 -4.765 -1.333 -3.358 -5.092 3.708 -4.232 -4.842 -1.167 -5.027 -3.109 0.083 -5.212 -1.087 -3.663 ML 37 35 6 40 6 1 16 77 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 15 76 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 12 74 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 17 78 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 17 77 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 5 59 C G - - MP 42 41 6 46 6 2 18 76 110 -9.233 -9.172 -0.019 -7.948 -8.228 -8.623 -5.187 -5.146 -4.765 -1.333 -3.358 -5.092 3.708 -4.232 -4.842 -1.167 -5.027 -3.109 0.083 -5.212 -1.087 -3.663 ML 43 41 6 46 6 1 15 75 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 14 74 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 11 72 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 16 76 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 16 75 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 6 58 C G - - MP 48 47 6 52 4 2 17 74 108 -3.236 -7.462 -0.199 -5.876 -5.187 -5.146 -4.765 -1.333 -3.358 -5.092 3.708 -4.232 -4.842 -1.167 -5.027 -3.109 0.083 -5.212 -1.087 -3.663 ML 49 47 6 52 4 1 14 73 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 4 1 12 73 107 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 51 47 6 52 4 0 11 71 105 -4.568 -4.250 -2.265 -0.520 IL 52 52 5 52 4 1 16 74 108 -2.308 -2.991 -0.622 -5.477 0.000 0.000 0.000 0.000 IR 53 53 6 53 3 1 15 74 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 8 - U - - - ML 54 53 6 56 3 1 15 72 106 -8.252 -0.017 -6.906 -2.031 -1.934 -2.787 1.744 D 55 53 6 56 3 0 10 70 104 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 14 73 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 9 - U - - - ML 57 56 3 59 3 1 14 71 105 -8.252 -0.017 -6.906 -0.815 -1.133 -0.740 1.249 D 58 56 3 59 3 0 10 69 103 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 14 72 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 10 - c - - - ML 60 59 3 62 3 1 13 70 104 -8.252 -0.017 -6.906 -0.035 0.660 -0.631 -0.326 D 61 59 3 62 3 0 9 68 102 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 13 71 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 11 - A - - - ML 63 62 3 65 3 1 12 69 103 -8.252 -0.017 -6.906 1.024 -0.114 -1.319 -0.640 D 64 62 3 65 3 0 9 67 101 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 12 70 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 12 - A - - - ML 66 65 3 68 3 1 11 68 102 -8.252 -0.017 -6.906 1.819 -2.954 -2.529 -2.556 D 67 65 3 68 3 0 8 66 100 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 11 69 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 13 - G - - - ML 69 68 3 71 3 1 10 67 101 -8.252 -0.017 -6.906 -2.181 -3.484 1.829 -2.869 D 70 68 3 71 3 0 8 65 99 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 10 68 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 14 - A - - - ML 72 71 3 74 3 1 9 66 100 -8.625 -0.015 -6.943 1.819 -2.954 -2.529 -2.556 D 73 71 3 74 3 0 8 65 99 -5.620 -0.734 -1.403 IL 74 74 3 74 3 1 9 66 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 57 - U - - MR 75 74 3 77 3 1 8 65 99 -8.625 -0.015 -6.943 -0.333 -1.139 -1.600 1.276 D 76 74 3 77 3 0 7 64 98 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 9 65 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 56 - g - - MR 78 77 3 80 2 1 7 64 98 -8.696 -0.003 0.509 -1.737 0.871 -1.158 D 79 77 3 80 2 0 6 63 97 -4.432 -0.068 IR 80 80 3 80 2 1 8 65 99 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 23 ] - - - - - - B 81 80 3 82 135 0 6 63 97 [ BEGL 24 ] - - - - - - S 82 81 1 83 4 0 0 45 79 -0.040 -6.997 -6.404 -7.044 [ MATP 25 ] 15 37 G U - - MP 83 82 1 87 6 2 2 45 79 -9.233 -9.172 -0.019 -7.948 -8.228 -8.623 -3.987 -2.668 -4.177 0.877 -5.186 -5.953 -0.733 -4.162 -3.762 0.853 -4.310 3.386 -1.076 -5.047 -2.671 -2.816 ML 84 82 1 87 6 1 1 43 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 1 87 6 1 1 43 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 1 87 6 0 0 40 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 44 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 44 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 16 36 C G - - MP 89 88 6 93 6 2 2 43 77 -9.233 -9.172 -0.019 -7.948 -8.228 -8.623 -5.187 -5.146 -4.765 -1.333 -3.358 -5.092 3.708 -4.232 -4.842 -1.167 -5.027 -3.109 0.083 -5.212 -1.087 -3.663 ML 90 88 6 93 6 1 1 42 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 41 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 39 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 42 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 42 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 35 U A - - MP 95 94 6 99 4 2 2 41 75 -7.255 -7.462 -0.043 -5.876 -4.913 -4.750 -4.667 -1.001 -3.468 -5.163 0.869 -4.209 -4.667 -0.834 -5.003 -2.626 3.587 -5.031 -1.127 -3.404 ML 96 94 6 99 4 1 1 40 74 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 4 1 1 40 74 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 98 94 6 99 4 0 0 38 72 -4.568 -4.250 -2.265 -0.520 IL 99 99 5 99 4 1 1 41 75 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 1 41 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 18 - A - - - ML 101 100 6 103 3 1 1 39 73 -8.252 -0.017 -6.906 1.819 -2.954 -2.529 -2.556 D 102 100 6 103 3 0 0 37 71 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 40 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 19 - A - - - ML 104 103 3 106 3 1 1 38 72 -8.252 -0.017 -6.906 1.333 -0.724 -1.475 -0.956 D 105 103 3 106 3 0 0 36 70 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 39 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 20 - g - - - ML 107 106 3 109 3 1 1 37 71 -8.252 -0.017 -6.906 -0.071 -0.689 0.848 -0.671 D 108 106 3 109 3 0 0 35 69 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 38 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 21 - c - - - ML 110 109 3 112 3 1 1 36 70 -8.252 -0.017 -6.906 0.261 0.781 -1.462 -0.473 D 111 109 3 112 3 0 0 33 67 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 37 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 22 - C - - - ML 113 112 3 115 3 1 1 35 69 -1.799 -0.506 -6.906 -2.446 1.770 -3.276 -1.722 D 114 112 3 115 3 0 0 28 62 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 36 70 -0.780 -1.318 -5.925 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - a - - - ML 116 115 3 118 3 1 1 19 37 -8.252 -0.017 -6.906 0.643 -0.474 -0.549 0.049 D 117 115 3 118 3 0 0 18 37 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - a - - - ML 119 118 3 121 3 1 1 17 36 -8.252 -0.017 -6.906 0.742 -0.567 -0.490 -0.089 D 120 118 3 121 3 0 0 17 36 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - u - - - ML 122 121 3 124 3 1 1 16 35 -8.252 -0.017 -6.906 0.269 -0.892 -0.514 0.638 D 123 121 3 124 3 0 0 16 34 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - g - - - ML 125 124 3 127 3 1 1 15 33 -8.252 -0.017 -6.906 0.218 -0.621 0.591 -0.556 D 126 124 3 127 3 0 0 15 33 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - U - - - ML 128 127 3 130 3 1 1 13 31 -8.252 -0.017 -6.906 -0.362 -0.507 -1.447 1.105 D 129 127 3 130 3 0 0 13 32 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - G - - - ML 131 130 3 133 2 1 1 1 1 * 0.000 -2.181 -3.484 1.829 -2.869 D 132 130 3 133 2 0 0 0 0 * 0.000 IL 133 133 3 133 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 134 133 3 -1 0 0 0 0 0 [ BEGR 40 ] - - - - - - S 135 81 1 136 3 0 0 32 51 -8.252 -0.017 -6.906 IL 136 136 2 136 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 38 - G - - - ML 137 136 2 139 5 1 1 32 51 -7.347 -0.033 -7.163 -7.375 -8.266 -1.046 -1.917 1.410 -0.754 D 138 136 2 139 5 0 0 31 50 -4.959 -0.803 -4.221 -2.596 -2.508 IL 139 139 3 139 5 1 1 33 52 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 39 55 C G - - MP 140 139 3 144 6 2 2 31 50 -9.233 -9.172 -0.019 -7.948 -8.228 -8.623 -5.187 -5.146 -4.765 -1.333 -3.358 -5.092 3.708 -4.232 -4.842 -1.167 -5.027 -3.109 0.083 -5.212 -1.087 -3.663 ML 141 139 3 144 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 3 144 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 3 144 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 40 54 C G - - MP 146 145 6 150 6 2 2 29 48 -9.233 -9.172 -0.019 -7.948 -8.228 -8.623 -5.187 -5.146 -4.765 -1.333 -3.358 -5.092 3.708 -4.232 -4.842 -1.167 -5.027 -3.109 0.083 -5.212 -1.087 -3.663 ML 147 145 6 150 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 41 53 G C - - MP 152 151 6 156 6 2 2 27 46 -9.233 -9.172 -0.019 -7.948 -8.228 -8.623 -5.304 -3.367 -5.478 -0.188 -6.018 -4.905 -1.243 -5.744 -4.675 3.748 -4.976 -1.093 -1.615 -4.830 -3.314 -4.346 ML 153 151 6 156 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 26 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 42 52 G C - - MP 158 157 6 162 4 2 2 25 44 -7.255 -7.462 -0.043 -5.876 -5.304 -3.367 -5.478 -0.188 -6.018 -4.905 -1.243 -5.744 -4.675 3.748 -4.976 -1.093 -1.615 -4.830 -3.314 -4.346 ML 159 157 6 162 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 4 1 1 25 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 161 157 6 162 4 0 0 24 44 -4.568 -4.250 -2.265 -0.520 IL 162 162 5 162 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 163 163 6 163 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 43 - A - - - ML 164 163 6 166 3 1 1 23 41 -8.625 -0.015 -6.943 1.819 -2.954 -2.529 -2.556 D 165 163 6 166 3 0 0 21 40 -5.620 -0.734 -1.403 IL 166 166 3 166 3 1 1 23 42 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 51 - G - - MR 167 166 3 169 5 1 1 22 40 -7.347 -0.033 -7.163 -7.375 -8.266 -2.181 -3.484 1.829 -2.869 D 168 166 3 169 5 0 0 21 40 -5.352 -0.707 -2.978 -4.409 -2.404 IR 169 169 3 169 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 44 50 G C - - MP 170 169 3 174 4 2 2 20 39 -7.255 -7.462 -0.043 -5.876 -5.304 -3.367 -5.478 -0.188 -6.018 -4.905 -1.243 -5.744 -4.675 3.748 -4.976 -1.093 -1.615 -4.830 -3.314 -4.346 ML 171 169 3 174 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 172 169 3 174 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 173 169 3 174 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 174 174 5 174 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 175 175 6 175 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 45 - A - - - ML 176 175 6 178 3 1 1 17 36 -8.252 -0.017 -6.906 1.819 -2.954 -2.529 -2.556 D 177 175 6 178 3 0 0 17 36 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 46 - U - - - ML 179 178 3 181 3 1 1 16 35 -8.252 -0.017 -6.906 -2.031 -1.934 -2.787 1.744 D 180 178 3 181 3 0 0 16 34 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 47 - A - - - ML 182 181 3 184 3 1 1 15 33 -8.252 -0.017 -6.906 1.819 -2.954 -2.529 -2.556 D 183 181 3 184 3 0 0 15 33 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 48 - A - - - ML 185 184 3 187 3 1 1 13 31 -8.252 -0.017 -6.906 1.819 -2.954 -2.529 -2.556 D 186 184 3 187 3 0 0 13 32 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 49 - G - - - ML 188 187 3 190 2 1 1 1 1 * 0.000 -2.181 -3.484 1.829 -2.869 D 189 187 3 190 2 0 0 0 0 * 0.000 IL 190 190 3 190 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 191 190 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME rydB ACC RF00118 DESC rydB RNA LENG 61 MAXL 141 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 19:19:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00118/CM NSEQ 7 EFFN 3.441895 CKSUM 4101640097 STATS LOCAL MSV -7.9229 0.71920 STATS LOCAL VITERBI -8.5915 0.71920 STATS LOCAL FORWARD -3.8243 0.71920 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.35718 1.42063 1.17012 1.65694 1.38629 1.38629 1.38629 1.38629 0.14433 4.16644 2.12957 1.46634 0.26236 0.00000 * 1 2.74462 3.62850 0.14091 3.20390 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.14132 2.16725 4.05731 0.27881 1.41340 0.23180 1.57552 2 2.94748 0.46260 2.72320 1.37746 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 3 3.68580 0.14726 3.51615 2.49938 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 4 3.68620 0.14723 3.51636 2.49945 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 5 3.68525 0.14729 3.51585 2.49927 6 C - - ( 1.38629 1.38629 1.38629 1.38629 0.14433 2.12957 4.16644 0.24313 1.53326 1.09861 0.40547 6 3.05518 2.94578 3.58689 0.13623 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 7 2.08022 2.28924 1.92899 0.46448 9 U - - , 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 8 1.43701 0.87549 1.83982 1.67740 10 c - - , 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 9 0.63216 1.44566 2.41455 1.94100 11 A - - , 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 10 0.09428 3.70483 3.38612 3.45688 12 A - - , 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 11 3.16241 4.09540 0.08843 3.66291 13 G - - , 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 12 0.09428 3.70483 3.38612 3.45688 14 A - - , 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 13 2.15077 3.36154 0.21336 3.19278 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 14 3.69872 0.14641 3.52306 2.50181 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 15 3.54603 2.34728 3.35213 0.17373 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 16 0.09428 3.70483 3.38612 3.45688 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 17 0.41409 1.90647 2.54409 2.19006 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 18 1.48021 1.88121 0.73679 1.95647 20 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 19 1.20683 0.78342 2.52623 1.80755 21 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 20 3.40466 0.11675 3.96703 2.84648 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.42205 1.11234 4.16644 1.12169 0.39412 1.09861 0.40547 21 0.92162 1.72301 1.78111 1.36592 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 22 0.84921 1.79222 1.73838 1.47031 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 23 1.19509 2.06381 1.74962 0.92504 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 24 1.25047 1.82880 0.92414 1.85695 32 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 25 1.68268 1.76676 2.48605 0.57982 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 26 3.16241 4.09540 0.08843 3.66291 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 27 0.19792 3.53839 2.18189 3.27880 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 28 2.77595 3.67502 0.12730 3.44555 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 29 3.36355 2.28272 3.13313 0.19869 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 30 2.26859 2.88625 0.35214 1.98356 38 G - - , 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 31 3.71272 0.14552 3.53051 2.50442 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 32 3.70328 0.14612 3.52550 2.50267 40 C - - < 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 33 2.89472 3.70500 0.11206 3.64586 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 34 2.89285 3.70237 0.11236 3.64229 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 35 0.09428 3.70483 3.38612 3.45688 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 36 2.89339 3.70313 0.11227 3.64332 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 37 0.09428 3.70483 3.38612 3.45688 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 38 3.05518 2.94578 3.58689 0.13623 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 39 0.09428 3.70483 3.38612 3.45688 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 40 0.09428 3.70483 3.38612 3.45688 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 41 3.16241 4.09540 0.08843 3.66291 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 42 3.84625 0.13353 3.56081 2.58730 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 43 3.16241 4.09540 0.08843 3.66291 51 G - - - 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 44 3.82112 0.13494 3.54878 2.58272 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 45 3.82695 0.13461 3.55159 2.58379 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 46 2.78684 3.69214 0.12535 3.46481 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 47 2.78987 3.69693 0.12481 3.47021 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 48 1.01989 2.73928 0.73559 2.34835 56 g - - , 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 49 1.66478 2.29399 2.62765 0.44996 57 U - - , 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 50 2.78128 3.68339 0.12634 3.45496 58 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 51 2.78299 3.68608 0.12604 3.45799 59 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 52 2.78539 3.68986 0.12561 3.46225 60 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 53 1.53728 2.89395 0.41052 2.71251 61 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 54 1.28102 1.12869 2.30195 1.20823 62 c - - : 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 55 1.02464 1.56348 1.37648 1.71923 63 a - - : 1.38629 1.38629 1.38629 1.38629 0.03151 4.16644 4.16644 1.46634 0.26236 1.09861 0.40547 56 1.21872 1.49531 1.79563 1.15776 64 u - - : 1.38629 1.38629 1.38629 1.38629 0.12101 4.16644 2.31806 1.46634 0.26236 1.09861 0.40547 57 0.40697 1.99265 2.49319 2.15971 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.03441 4.07984 4.07984 1.46634 0.26236 2.12220 0.12757 58 1.16297 1.38894 1.40986 1.64027 66 a - - : 1.38629 1.38629 1.38629 1.38629 0.03441 4.07984 4.07984 1.46634 0.26236 2.12220 0.12757 59 1.02562 2.09871 2.26053 0.88065 67 u - - : 1.38629 1.38629 1.38629 1.38629 0.03441 4.07984 4.07984 1.46634 0.26236 2.12220 0.12757 60 1.24777 1.37303 2.21496 1.04880 68 u - - : 1.38629 1.38629 1.38629 1.38629 0.03441 4.07984 4.07984 1.46634 0.26236 2.12220 0.12757 61 2.09214 0.98891 2.65564 0.83392 69 u - - : 1.38629 1.38629 1.38629 1.38629 0.01735 4.06278 * 1.46634 0.26236 0.00000 * //