# STOCKHOLM 1.0
#=GF ID C0465
#=GF AC RF00116
#=GF DE C0465 RNA
#=GF AU Moxon SJ; 0000-0003-4644-1816
#=GF GA 40.0
#=GF NC 37.7
#=GF TC 40.7
#=GF SE Hershberg R
#=GF SS Predicted; PFOLD
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.46 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 12202758
#=GF RT Transcriptome analysis of Escherichia coli using high-density
#=GF RT oligonucleotide probe arrays.
#=GF RA Tjaden B, Saxena RM, Stolyar S, Haynor DR, Kolker E, Rosenow C
#=GF RL Nucleic Acids Res 2002;30:3732-3738.
#=GF CC This family consists of a number of bacterial RNA genes of 78 bases in
#=GF CC length which are found between the tar and cheW genes in E. coli and
#=GF CC Shigella flexneri. The function of this RNA is unknown.
#=GF WK C0465_RNA
#=GF SQ 8

AE005174.2/2649880-2649955 GGGAAACUUUAUUGCUGAUGCCACCCGCCGCGAAAUUGAAAU--AAAACCCGAUGCGCAGAUCAUCGGGUUCAUUUCA
CP000247.1/1882367-1882444 GGGAAACUUUAUUGCUGAUGCCACCCGCCGCGCAAUUGAAAUAAAAAACCCGAUGCGCAGAUCAUCGGGUUCAUUUCA
BA000007.2/2574669-2574744 GGGAAACUUUAUUGCUGAUGCCACCCGCCGCGAAAUUGAAAU--AAAACCCGAUGCGCAGAUCAUCGGGUUCAUUUCA
FM180568.1/2069466-2069543 GGGAAACUUUAUUGCUGAUGCCACCCGCCGCGAAAUUGAAAUAAAAAACCCGAUGCGCAGAUCAUCGGGUUCAUUUCA
AE014075.1/2122192-2122269 GGGAAACUUUAUUGCUGAUGCCACCCGCCGCGCAAUUGAAAUAAAAAACCCGAUGCGCAGAUCAUCGGGUUCAUUUCA
AAJX02000031.1/11199-11122 GGGAAACUUUAUUGCUGAUGCCACCCGCCGCGAAAUUGAAAUAAAAAACCCGAUGCGCAGAUCAUCGGGGUCAUUUCA
CP000948.1/2061334-2061411 GGGAAACUUUAUUGCUGAUGCCACCCGCCGCGAAAUUGAAAUAAAAAACCCGAUGCGCAGAUCAUCGGGUUCAUUUCA
AAJV02000029.1/42474-42551 GGGAAACUUUAUUGCUGAUGCCACCCGCCGCGAAAUUGAAAUAAAAAACCCGAUGCGCAGAUCAUCGGGGUCAUUUCA
#=GC SS_cons               <<____>>:::<<<<----<<_____>>->>>>:::<<<<<<----<<<<<<<<<_______>>>>>>>>>->>>>>>
#=GC RF                    gGGAAACuUUAuuGCUGAUGCCACCCGCCGCgaAAUuGaaauAAAAaaCCCGauGCGCAGAUCauCGGGuuCauuuCa
//
