# STOCKHOLM 1.0
#=GF ID S15
#=GF AC RF00114
#=GF DE Ribosomal S15 leader
#=GF AU Bateman A; 0000-0002-6982-4660
#=GF GA 39.5
#=GF NC 39.4
#=GF TC 39.5
#=GF SE Ji Y
#=GF SS Published; PMID:8955900
#=GF TP Cis-reg; leader;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF CL CL00121
#=GF DR SO; 0005836; regulatory_region;
#=GF DR GO; 0045974; regulation of translation, ncRNA-mediated;
#=GF RN [1]
#=GF RM 8955900
#=GF RT Pseudoknot and translational control in the expression of the S15
#=GF RT ribosomal protein.
#=GF RA Benard L, Philippe C, Ehresmann B, Ehresmann C, Portier C
#=GF RL Biochimie 1996;78:568-576.
#=GF CC The E. coli Ribosomal S15 gene 5' UTR can form two alternative structures.
#=GF CC One that is a series of three hairpins, The other includes a pseudoknot.
#=GF CC This structure causes translational regulation of the S15 protein. The
#=GF CC alignment of this family contains only the final two hairpins which are
#=GF CC conserved in other species, and also includes the complete region that
#=GF CC forms the alternate structures.
#=GF WK Ribosomal_S15_leader
#=GF SQ 78

CP000076.1/977408-977537     UAUAGAUACAGGGAUUUGUCCCUGGCCUGUUGAAACUGUUCUU---GAACAGUUUCC-UGAUAUAA---GGAUUGCC---CACAUGGCACUCAGCGUUGAAGAAAAAGCUCAGAUCGUAACCGACUACCAGCAAGCUGUU
CP000075.1/4969964-4969852   CGGCCUGUUGGAAAC-----GUUUCUCCGGAAACGCUUCC----------------U-UGCACAAAA--GGAUUGCC---CACAUGGCACUCAGCGUUGAAGAAAAAGCUCAGAUCGUAACCGACUACCAGCAAGCUGUU
CP000058.1/4774465-4774353   CGGCCUGUUGGAAAC-----GUUUCUCCGGAAGCGCUUCC----------------U-UGAACAAAA--GGAUUGCC---CACAUGGCACUCAGCGUUGAAGAAAAAGCUCAGAUCGUAACCGACUACCAGCAAGCUGUU
AE004969.1/192921-193035     UGGCAAACUUGU-------------CCGAAUCCCAUUUGGGGUU--CUUUUUAUUUU-UC---------GGAGUUUUUCCAUUAUGGCACUGACCGUAGAACAAAAAGCACAAAUCGUUAAAGAUUUCCAACGUAAAGAA
AE002098.2/639696-639820     GUUGUCUUCAGGCUUGGCAAACUUGUCUGAAUCCCUAUGGGGA---UUCUUAUAUUU-UU---------GGAGUUUUC--AUUAUGGCACUGACCGUAGAACAAAAAGCACAAAUCGUUAAAGAUUUCCAACGCAAAGAA
CR378664.1/324022-324139     GGUGUCGGCUGAAUC-----AGAGAUUGGCGACACAAAUUAAA---AACAUCUAGUA-UU---------AGGAAGAG----UUAUGUCUCUGAAUGCAGAAACUAAAGCAGCUAUCGUUGCUGAAUACGCACAAUGCGAA
BA000031.2/2575966-2575847   CGUGUCGGCUGAAUC-----AGAGAUUGGCUGGCACAAACAUUAA-CUUACUCUUAU-UA---------GGAGAGAA----UUAUGUCUCUGAAUGCAGAAACUAAAGCAGCAAUCGUUGCAGAAUACGCACAAUCUGAA
BA000037.2/2744699-2744580   CGUGUCGGCUGAAUC-----AGAGAUUGGCUGGCACAAAUAUUAA-CCUACUCUUAU-UA---------GGAGAGAA----UUAUGUCUCUGAAUGCAGAAACUAAAGCAGCAAUCGUUGCUGAUUACGCACGUGGCGAA
BX950851.1/783487-783603     UUGGGUGGCUGAAUU-----AGAGAUCGGCGCCUGUUUUUU-----UAUCUAUAAUG-UU---------GGAGUAUU---ACAAUGUCUCUAAGUGUUGAAGCUAAAGCUAAAAUCGUAGCAGACUUCGGUCGUGGCACU
AE016827.1/652723-652843     UGUCGUAGCUGAAUU-----AGAGAUCGGCAAACGAUGUACUAUU-AACUUACUUUU-UA---------GGAGUAAU---AAAAUGUCUCUAAGCGUAGAAAAAAAAGCUGCAAUCGUAGCUGAAUUCGGUCGUGAUGCA
BX936398.1/569499-569617     UUGGGUUGCUGAAUU-----AGAGAUCGGCGCCUGUCUUAAUU---CAUUUAUAUAU-UU---------GGAGUUGU---AUCAUGUCUCUAAGUGUUGAAGCGAAAGCUAAAAUUGUUGCUGACUUCGGUCGCGGUACU
U18997.1/92494-92380         UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUUUCAU-------UCUAUAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUGAGUUUGGUCGUGACGCA
X13270.1/1684-1798           UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUUUCAU-------UCUAUAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUGAGUUUGGUCGUGACGCA
X13775.1/1684-1798           UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUUUCAU-------UCUAUAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUGAGUUUGGUCGUGACGCA
M14425.1/90-204              UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUUUCAU-------UCUAUAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUGAGUUUGGUCGUGACGCA
X00761.1/90-204              UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUUUCAU-------UCUAUAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUGAGUUUGGUCGUGACGCA
BA000007.2/4054239-4054125   UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUUUCAU-------UCUAUAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUGAGUUUGGUCGUGACGCA
J02638.1/90-204              UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUUUCAU-------UCUAUAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUGAGUUUGGUCGUGACGCA
X01073.1/87-201              UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUUUCAU-------UCUAUAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUGAGUUUGGUCGUGACGCA
U00096.2/3309764-3309650     UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUUUCAU-------UCUAUAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUGAGUUUGGUCGUGACGCA
AE005174.2/4121455-4121341   UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUUUCAU-------UCUAUAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUGAGUUUGGUCGUGACGCA
BX571874.1/72249-72130       UUGGGUGGCUGAAUU-----AGAGAUCGGCACCUGUAAUUUUAU--UUUAUAUGUUU-UU---------GGAGUUGU---AAUAUGUCUCUAAGUACUGAAGCAAAAGCGCAAAUUAUUGCUGAAUUUGGUCGUGAUGUG
CP000026.1/3260707-3260592   UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUCUCAU------UCUUAAAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCUACAGCUAAAAUCGUUUCUGAGUUCGGUCGUGACGCA
AL627278.1/101763-101648     UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUCUCAU------UCUUAAAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCUACAGCUAAAAUCGUUUCUGAGUUCGGUCGUGACGCA
AF399929.1/155-270           UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUCUCAU------UCUUAAAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCUACAGCUAAAAUCGUUUCUGAGUUCGGUCGUGACGCA
AE017220.1/3407979-3407864   UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUCUCAU------UCUUAAAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCUACAGCUAAAAUCGUUUCUGAGUUCGGUCGUGACGCA
Y10692.1/1450-1568           UUGGGUUGCUGAAUU-----AGAGAUCGGCGCCUGUCUUAAUU---UAUCUAUAUAU-UU---------GGAGUUGU---AUCAUGUCUCUAAGUGUUGAAGCGAAAGCUAAAAUUGUUGCUGACUUCGGUCGCGAUGCC
X76069.1/151-270             UUGGGUGGCUGAAUU-----AGAGAUCGGCACCCGUAAUUUUAA--UUUAUGUAUUU-UU---------GGAGUUGU---AAUAUGUCUCUAAGUACUGAAGCAAAAGCGCAAAUUAUUGCUGAAUUUGGUCGUGAUGCG
CP000563.1/3795357-3795244   CCCUCUGGCUGAGUU-----AGUGAUCGGCUAGAGAUUCA-------UAUUAUUUAU-UU---------GGAGAUAU----ACAUGUCACUAAGUACUGAAGUAAAAGCAAAAAUUUUGGCUGAUUUUGGCCGUUGUGAA
CP000444.1/1261147-1261260   CCCUCUGGCUGAGUU-----AGUGAUCGGCUAGAGAUUCA-------CAUUUUAUAU-UU---------GGAGAGAC----ACAUGUCACUAAGUACUGAAGCGAAAGCAAAGAUCCUGGCUGAAUUUGGCCGUGGCGCA
AACY021269637.1/318-197      UGACCUACCUGUAAA-----UGUGCACGGGUAGGCCAAUCUUUU--UAAUUGCACAU-UA---------UGAGGAAAAG-AAAAUGGCUCUUAGUCCAACUGAAAAAGCAGCAAUUGUUACUGACUACCAACGUGAAGAA
AACY020346007.1/913-799      UGGGAUAGCUGAAUU-----AGAGAUCGGCAUCCUUUCAU-------UCUUAACACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCUACCGCUAAAAUCGUUUCUGAGUUUGGUCGUGAUGCA
AAOJ01000019.1/50021-49903   GGUGUCGGCUGAAUC-----AGAGAUUGGCGGCACAAAUUAAAA--CAUCUUUGUAU-UA---------GGAAUGAG----UUAUGUCUCUGAAUGCAGAAACUAAAGCAGCAAUCGUUGCAGAAUACGCACAAUGUGAA
CP000302.1/1150814-1150928   CCCUCUGGCUGAGUU-----AGUGAUCGGCUGGAGAUACA------UUCUAUAUAUU-UU---------GGAGAUAC----ACAUGUCACUAAGUACUGAAGCAAAAGCAAAAAUCCUAGCUGAUUUCGGCCGUUGUGAA
AAWF01000035.1/36295-36175   CGUGUCGGCUGAAUC-----AGAGAUUGGCUGGCACAAACUUAAACCUCAAACUCUU-UA---------GGAGAGAA----UUAUGUCUCUGAAUGCAGAAACUAAAGCAGCAAUCGUUGCUGAAUAUGCACGUUGCGAA
AAZW01000011.1/111600-111481 CGUAGCGGCUGAAUC-----AGAGAUUGGCUGCUACAAAUAUUA--AACUACUCUUA-UC---------AGGAGAGA---AUUAUGUCUCUGAAUGCAGAAACUAAAGCAGCAAUCGUUGCAGAAUACGCGCGCUCUGAA
CP000238.1/662084-661969     CUUUAUGGCUAAAUU-----AGAGAUUGAUGCCUAUCUAU------UUUAUAUUAAU-UU---------GGAUUAUU---AUAAUGUCUCUAAGUUUUAAUACGAAAGCCAAAAUAAUUGCUGAUUUUGGCAGAAAUAAU
AE017143.1/1451380-1451500   UGUCAUAGCUGAGUU-----AGAGAUCGGCUAUUGAUGUA-------UUAUCAACCC-UGAAAAAA---AGGAUAUA---AAUAUGUCUCUAAGCGUAGAAGCAAAAGCAAAGAUCGUGUCUGAAUUUGGCCGUGAUGCA
AACY020025610.1/990-1108     UGGGCUGUCUGUAAU-----UAUGCACGGGCAUCCUGAAUU-----AACAAUUGCAUAUU---------GGAGUAAUU--AUCAUGGCACUAAGUGCAGAAGAGAAAGCAAAAAUCUUAGCAGACUUUGGACAGGGCGAU
CP000507.1/1165215-1165328   CUUCUUGGCUGAGUU-----AGUGAUCGGCUGAGACAAUU-------UACUGAUAUU-UU---------GGAGAUAU----UCAUGUCACUAAGUACUGAAGCUAAAGCAAAAAUCCUGGCUGAGUUUGGCCGUGGUGAA
AAWP01000061.1/18567-18448   CGUAGCGGCUGAAUC-----AGAGAUUGGCUGCUACAACUUUAAA-CCUACUCUUAU-UA---------GGAGAGAA----UUAUGUCUCUGAAUGCAGAAACUAAAGCAGCAAUCGUUGCAGAAUACGCACAAGGCGAA
CP000606.1/3348589-3348478   CUCUUUGGCUGAGUU-----AGUGAUCGGCUGAAGUUUCU---------AUCUAUUU-UU---------GGAGAAAA----AAAUGUCACUAAGUAAAGAAGUAAAAGCACAAAUCCUGGCUGAUUUCGGUCGUGGUGAA
CP000746.1/1989106-1989226   UAUCGUCGCUGAAUU-----AGAGAUCGGCGAACGAUGUAUCGUU-AACUUGCUUUU-CUA--------GGAGUAAA----AAAUGUCUCUAAGCGUAGAACAAAAAGCUGCAAUCGUUGCAGAAUUCGGUCGUGAUGCA
AACY020349371.1/3302-3417    UUUCACGGCUGAAUU-----AGAGAUUGGCUGUGAACCUU------UAAACACUCUA-CU---------GGAGUAAU---ACCAUGUCUCUAAAUGCUGAGAUCAAAGCUCAAAUCGUUGCUGACAACGCUCGUUGCGCC
AP008232.1/678028-678144     GCGGGUGGCUGAAUU-----AGAGAUCGGCGCCCAUCUAUU-----UCACAAUCAUU-UU---------GGAGUGUU---AUAAUGUCUCUAAGUGUUGAAGCGAAAGCGAAAAUUGUUUCUGAUUUCGGCAGUGAUGCC
CP000447.1/1160052-1160165   CACUCUGGCUGAGUU-----AGUGAUCGGCUUGAGAUACA-------UUUACUUUUU-UU---------GGAGAUAC----ACAUGUCACUAAGUGCUGAAACAAAAGCAAAAAUUUUGGCUGAUUUUGGUCGCUGCGAA
L42023.1/1554761-1554645     ACUUCCGUCAUAAAU-----CCAUUUUUGAAUUGCUAUUUGA----UCGCUCUUUUU-UA---------GGAGUAAA----AAAUGUCUCUAAGUACUGAAAAAAAAGCAGCAAUCGUUGCUGAAUUUGGUCGUGAUGCG
CP000647.1/3935217-3935102   AGGGGUCGCUGAAUU-----AGAGAUCGGCACCCUUUCUU------UCUUUUAAUUU-UU---------GGAGUUAU---AAAAUGUCUCUAAGCGUUGAAGCUAAAGCAAAAAUCGUUUCUGAGUUUGGUCGUGGCGAA
CR954246.1/1037269-1037385   CGUUUUGGCUGAAUU-----AGUGAUCGGCUAAAGCACCUUUU---AAAUUUAAUUU-UU---------GGAGUUAU-----UAUGUCACUAAGCAAUCAAGAAAAAAUCGAUAUCAUUGCUAAAUUCGCACGUGCUGAA
AC192955.1/73895-74009       UGGGGUUGCUGAAUU-----AGAGAUUGGCGCCCAUCUUA-------UUUUAAUUAU-UC---------GGAGUAUU---AUAAUGUCUCUAAGUGUUGAAGUGAAAGCUAAAAUUAUUGCUGAUUUCGGUCGUAAUGCU
AASA01000067.1/80679-80559   UGUCGUAGCUGAGUU-----AGAGAUCGGCUAUUGAUGUA-------UUAUCAACCC-UUAACAAA---AGGAAAUU---AAAAUGUCUCUAAGCGUAGAAGCAAAAGCAAAAAUCGUUGCUGAAUUUGGUCGUGAUGCA
CP000653.1/3906672-3906558   UGGGGUUGCUGAAUU-----AGAGAUCGGCACCCUUUCAU------UCUUUAUAUUU-UU---------GGAGUUCA----UCAUGUCUCUAAGCGUUGAAGCUAAAGCUAAAAUCGUUUCCGAGUUCGGUCGUGGUACU
CP000569.1/1169320-1169443   UGUCCUAGCUGAGUU-----AGAGAUCGGCUACGGAUGUA-------UUAUCAACCC-UUAACGAAAAAAGGAUAUU---AAAAUGUCUCUAAGCGUAGAAGCAAAAGCAAAAAUCGUUGCUGAAUUUGGUCGUGAUGCA
AAOH01000006.1/367267-367382 CGUUUUGGCUGAAUU-----AGUGAUCGGCUAAAGCAUCUUU----UAAAUUUAUUU-UU---------GGAGUCAU-----UAUGUCACUAAGUACUCAACAAAAAGCUGAAAUUCUAGCUAAAUUCGCACGCGCUGAA
AAOU01000003.1/127548-127665 GGUGCCGGCUGAAUC-----AGAGAUUGGCGGCACAAAUUAA----AACAUCUUGUA-UU---------AGGAAUGA---GUUAUGUCUCUGAAUGCAGAAACUAAAGCAGCAAUCGUUGCAGAUUACGCACAAUGUGAA
AAZI01000003.1/93153-93274   UGUCAUCGCUGAGUU-----AGAGAUCGGCGAAUGAUGUAUUAAC-AACACUACCUU-UUA--------GGAGUAAA---AAAAUGUCUCUAAGUACAGAAAAAAAAGCAGCAAUCGUUGCUGAAUUUGGUCGUGAUGCG
AAND01000050.1/13253-13134   CGUAGCGGCUGAAUC-----AGAGAUUGGCUGCUACAAAUAUA---AACUUACUCUUAUCA--------GGAGAGAU----UUAUGUCUCUGAAUGCAGAAACUAAAGCAGCAAUCGUUGCAGAAUACGCACAAUCUGAA
AACY024062024.1/98-217       GUUGGCCGGGUUAGCAU---AGCGCCACCCGGCACCCUUUCU----UUCUUUUAAAU-CU---------GGAGUUUU---AAAAUGUCUCUAAGCGUUGAAGCUAAAGCAAAAAUCGUUUCUGAGUUUGGUCGUGGCGAA
ABCQ01000011.1/16156-16042   UCUUAUAGCUGAACG-----AGUGGUCGGCUAUGAGCUAU--------UUAUCUAUA-UU---------GGAGACUCC--ACUAUGUCAUUAAACGCUGAAGCUAAAGCAGCUAUCGUUGCAGAUUUCGCACGCCAAGAA
AE017340.1/1019832-1019719   UAUCGAUGCUGAAUU-----AGUGAUUGGCGUCGAUCAUU------UUGACAAAACU-UA---------GGAGUUAG-----CAUGUCACUAACUGUUGAACAGAAAGCUGAGAUUUUAAAAGAAUUUGGCCAAGGCGAG
CP000388.1/2032735-2032850   UGGCAUGGCUGAAUU-----AGUGAUCGGCCUGCUGUAUUU-----UAGCUCUUAUA-UU---------GGAGAAAG----UUAUGUCACUAACUACUCAAGAAACUGCAGCAAUCAUUGCUGAUUAUGGCGUAAAAGAA
CU207211.1/1844328-1844211   UCGUUGUUCACGGUG-----UGUGGGGUGAGAACUCUGUGCA----UCGCAUGUGAA-AG---------GUAAUUCA---AUCAUGUCUCUCGAAAAAACAAGCAAAGCUGCCAUCGUUGCAGAUAACGCACGUGGCGCA
AE016825.1/1555422-1555541   UGGGUUUUCCGGCUCGCCGCACUUGUCGGGUUUUCAAACC--------CCUAUUGAA-AC---------GGAGCAAUC--CAAAUGGCAAUGACCGCCGCUCAAAAAGCAGAAAUCGUUAAAGGCUUCCAACGCGCUGAA
CP000680.1/3978377-3978281   UGAGACUGCUG---------------CGGCAGUUUCCAGA------------------UG---------AGAGGAAGCC-AACAUGGCACUCAGCGUUGAAGAAAAAGCCCAGAUCGUAAACGAGUACAAGCAAGCUGAA
Y18132.1/190-286             UUGGACCCCGCA-------------UGCGGGAUCCGUUAU------------------CA---------GGAGAAGC---CACAUGGCCCUCAGCGUUGAAGAAAAAGCUCAGAUCGUUGCCGAAUAUCAGCAAACCGCC
CP000821.1/4128138-4128023   CACUUUAGCUGAGUU-----AGUGAUUGGCUAAAGCUUAU------UAAUGCAUUAU-UU---------GGAGAGAC---AAAAUGUCACUAAAUGCUGAACAAACUGCAACAAUCCUGGCUGAAUUCGGUCGUAGUGAA
CP001157.1/4317828-4317721   GUCCGACGCCGC------------AUUGGCCCGCACGGUU------UCCCGACAGAG-AG---------GAUGCCCA----UCAUGGCACUCACCGUUGAAGAAAAAGCCCAGAUCGUCAACGAGUACAAGCAAGCUGAA
CP000961.1/4345047-4344931   CGCUUUAGCUGAGUU-----AGUGAUUGGCUAAAGAUUUAU-----UAAUGCAUUAU-UU---------GGAGAGAC---AACAUGUCACUAAAUGCUGAACAAACUGCAUCUAUCCUGGCUGAAUUCGGUCGUUGUGAA
CP001139.1/514873-514992     CGUAGUGGCUGAAUC-----AGAGAUUGGCUACUACAAAUAUUA--AACUACUCUUA-UC---------AGGAGAGA---AUUAUGUCUCUGAAUGCAGAAACUAAAGCAGCAAUCGUUGCUGAAUACGCACAAUCUGAA
CP000436.1/508973-508852     UGUCAUCGCUGAGUU-----AGAGAUCGGCGAAUGAUGUAU-----UAUCAACCCUU-UUAGUAUAA--GGAAUGUU-----UAUGUCUCUAAGUACAGAAAAAAAAGCAGCUAUUGUUGCUGAAUUUGGUCGUGAUGCG
CP000851.1/3751621-3751505   CCCUUUGGCUGAGUU-----AGUGAUCGGCUAAAGAUUUUUU----AAUGUAAUAUU-UU---------GGAGAUAG----AAAUGUCACUAAGUGUUGAAGCUAAAGCUCAAAUCCUAGCUGAAUUUGGUCGUUGUGAA
CP000886.1/3412197-3412082   UGGGAUCGCUGAAUU-----AGAGAUCGGCGUCCUCUCAU------UCUUAAAUACU-UU---------GGAGUUUU---AAAAUGUCUCUAAGUACUGAAGCUACAGCUAAAAUCGUUUCUGAGUUCGGUCGUGACGCA
CP000057.2/1535723-1535843   UAUCAUCGCUGAGUU-----AGAGAUCGGCGAAUGAUGUAUUAAC-AACACUACCUU-UUA--------GGAGUAAA----AAAUGUCUCUAAGUACUGAAAAAAAAGCAGCAAUCGUUGCUGAAUUUGGUCGUGAUGCG
AE004439.1/352235-352355     UGUCGUAGCUGGAUU-----AGAGAUCGGCUAGCGAUGUAUUUU--UAACUUAACUU-UUA--------GGAGUUAU---CAAAUGUCUCUAAGUACAGAAAAAAAAGCAGCGAUCGUUGCUGAAUUUGGUCGUGAUGCA
CP000503.1/1219554-1219667   CCCUCUGGCUGAGUU-----AGUGAUCGGCUAGAGAUUCA-------UACUAUAUAU-UU---------GGAGAGAC----ACAUGUCACUAAGUACUGAAGCGAAAGCAAAAAUCCUGGCUGAAUUUGGCCGCGGCGAA
CP002276.1/1040102-1039987   ACUUCCGUCAUAAAU-----CCAUUUUUGAAUUGCUAUUUGA----UCGCUCUUUUU-UA---------GGAGUAAA-----AAUGUCUCUAAGUACUGAAAAAAAAGCAGCAAUCGUUGCUGAAUUUGGUCGUGAUGCG
CP000094.2/917832-917934     UGUUGAAACUGUUUU-----UGA-AACAGUUUCCUGAUAA------------------AA---------GGAUUGCC----UCAUGGCUCUCGACGUUCAAGAAAAAGCUCAAAUCGUUGCCGACUACCAGCAAGCCGUU
AALF02000011.1/47337-47457   UUGGGUUGCUGAAUU-----AGAGAUCGGCGCCUGUUUUAAUUUA-UCUAUAUAUAU-UU---------GGAGUUGU---AUCAUGUCUCUAAGUGUUGAAGCGAAAGCUAAAAUUGUUGCUGACUUCGGUCGCGGUGCC
#=GC SS_cons                 ::::::<<<<<<___....._____>>>>>>::::::::::.....::::::::::<.<<.........<<<<____..._______>>>>>>>::::::::::::::::::::::::::::::::::::::::::::::
#=GC RF                      ugugaUcgCuGaAUU.....AGaGAuCgGcgaccauuuuuu.....uauuuuuuuuu.uu.........GGaGUuau...AaaAUGUCuCUaagUGcUGAAGaaAAAGCaaAAAUCGUUGCuGAaUUCGguCGuGauGaA
//
