INFERNAL1/a [1.1.5 | Sep 2023] NAME Vimentin3 ACC RF00109 DESC Vimentin 3' UTR protein-binding region STATES 210 NODES 55 CLEN 67 W 127 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 23:53:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00109/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 19 EFFN 3.975342 CKSUM 136239184 NULL 0.000 0.000 0.000 0.000 GA 36.00 TC 36.00 NC 35.90 EFP7GF -9.9118 0.71910 ECMLC 0.56783 -6.63917 3.27051 1600000 333394 0.003599 ECMGC 0.43033 -12.12371 0.07074 1600000 76046 0.005260 ECMLI 0.54548 -4.37184 5.25029 1600000 228385 0.005254 ECMGI 0.47893 -7.22144 3.10783 1600000 56299 0.007105 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 127 201 -7.609 -7.816 -0.033 -6.230 IL 1 1 2 1 4 4 30 130 204 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 29 129 203 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 5 30 128 202 -8.587 -0.013 -7.241 0.151 -1.048 -0.189 0.612 D 4 2 3 5 3 1 24 125 199 -6.174 -1.687 -0.566 IL 5 5 3 5 3 3 29 128 202 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 4 29 127 201 -8.587 -0.013 -7.241 0.008 -0.380 -0.812 0.728 D 7 5 3 8 3 1 23 124 198 -6.174 -1.687 -0.566 IL 8 8 3 8 3 3 28 127 201 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 4 28 126 200 -8.587 -0.013 -7.241 -0.044 0.644 -1.522 0.163 D 10 8 3 11 3 0 22 124 198 -6.174 -1.687 -0.566 IL 11 11 3 11 3 3 27 126 200 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 3 27 125 199 -8.944 -0.012 -7.261 0.662 -1.291 0.596 -1.009 D 13 11 3 14 3 0 22 123 197 -5.620 -0.734 -1.403 IL 14 14 3 14 3 2 26 125 199 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 86 - a - - MR 15 14 3 17 3 3 27 124 198 -8.944 -0.012 -7.261 0.837 -0.876 -1.309 0.340 D 16 14 3 17 3 0 20 121 195 -6.390 -1.568 -0.620 IR 17 17 3 17 3 2 25 124 198 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 85 - u - - MR 18 17 3 20 3 3 26 123 197 -8.944 -0.012 -7.261 -0.502 -1.173 -0.154 0.964 D 19 17 3 20 3 0 19 120 194 -6.390 -1.568 -0.620 IR 20 20 3 20 3 2 24 123 197 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 84 - a - - MR 21 20 3 23 3 2 25 122 196 -8.944 -0.012 -7.261 0.649 -1.120 -0.219 0.154 D 22 20 3 23 3 0 19 120 194 -6.390 -1.568 -0.620 IR 23 23 3 23 3 2 23 122 196 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 83 - G - - MR 24 23 3 26 5 2 25 121 195 -7.650 -0.026 -7.465 -7.678 -8.569 -0.351 -1.455 1.218 -0.928 D 25 23 3 26 5 0 18 119 193 -5.352 -0.707 -2.978 -4.409 -2.404 IR 26 26 3 26 5 1 22 121 195 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 82 u a - - MP 27 26 3 31 6 3 24 120 194 -9.396 -9.336 -0.017 -8.112 -8.392 -8.787 -0.993 -1.953 -0.938 1.319 -1.909 -2.810 1.387 -2.281 -2.024 0.923 -2.593 -0.563 2.087 -2.101 -0.109 -0.740 ML 28 26 3 31 6 1 19 118 192 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 19 117 191 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 3 31 6 0 15 114 188 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 21 119 193 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 21 119 193 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 81 a u - - MP 33 32 6 37 6 3 23 118 192 -9.396 -9.336 -0.017 -8.112 -8.392 -8.787 -0.140 -2.617 -3.413 2.754 -3.803 -4.496 -0.039 -3.679 -3.354 1.123 -3.896 1.658 -0.224 -3.703 -1.729 -2.405 ML 34 32 6 37 6 1 19 116 190 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 19 116 190 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 15 112 186 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 20 117 191 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 20 117 191 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 80 u a - - MP 39 38 6 43 6 3 21 116 190 -9.396 -9.336 -0.017 -8.112 -8.392 -8.787 -1.004 -1.996 -0.981 0.972 -1.925 -2.846 1.412 -2.306 -2.057 0.860 -2.626 -0.607 2.176 -2.139 0.410 -0.810 ML 40 38 6 43 6 1 18 114 188 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 18 114 188 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 15 111 185 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 19 115 189 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 19 115 189 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 79 c g - - MP 45 44 6 49 6 3 19 114 188 -9.396 -9.336 -0.017 -8.112 -8.392 -8.787 -2.592 -2.671 -2.732 1.202 -2.369 -3.550 2.337 -2.845 -2.759 0.713 -1.248 -0.987 1.200 -2.886 1.219 -1.828 ML 46 44 6 49 6 1 17 112 187 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 17 113 187 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 14 110 184 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 18 113 187 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 18 113 187 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 78 u a - - MP 51 50 6 55 6 3 17 112 186 -9.396 -9.336 -0.017 -8.112 -8.392 -8.787 -3.587 -3.452 -3.603 0.273 -2.819 -4.343 1.565 -3.418 -3.594 1.316 -4.072 -1.381 2.759 -3.791 0.328 -2.486 ML 52 50 6 55 6 1 16 111 185 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 16 111 186 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 14 110 184 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 16 111 185 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 16 111 185 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 77 u a - - MP 57 56 6 61 3 2 15 110 184 -6.063 -16.532 -0.022 -2.571 -2.572 -2.718 1.271 -2.447 -3.571 1.478 -2.871 -0.901 1.161 -3.296 -0.790 2.394 -2.870 -0.362 -1.809 ML 58 56 6 61 3 1 15 111 185 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 3 1 15 111 185 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 D 60 56 6 61 3 0 14 110 184 -1.585 -1.585 -1.585 IL 61 61 5 61 3 1 15 112 186 -0.610 -4.491 -1.736 0.000 0.000 0.000 0.000 IR 62 62 6 62 2 1 14 109 183 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 63 62 6 64 114 0 13 108 182 [ BEGL 16 ] - - - - - - S 64 63 1 65 4 0 0 76 150 -0.034 -7.205 -6.612 -7.252 [ MATP 17 ] 11 38 A U - - MP 65 64 1 69 6 2 2 76 150 -9.396 -9.336 -0.017 -8.112 -8.392 -8.787 -4.991 -3.784 -4.838 3.768 -5.891 -7.124 -1.513 -4.799 -4.783 -0.234 -5.384 -1.116 -1.912 -6.049 -3.444 -3.672 ML 66 64 1 69 6 1 1 74 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 1 69 6 1 1 74 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 1 69 6 0 0 70 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 75 149 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 75 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 37 A U - - MP 71 70 6 75 6 2 2 74 148 -9.396 -9.336 -0.017 -8.112 -8.392 -8.787 -4.422 -3.216 -4.496 3.559 -5.800 -6.652 -1.415 -4.582 -4.265 0.424 -4.884 0.658 -1.576 -5.417 -3.304 -3.235 ML 72 70 6 75 6 1 1 72 146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 72 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 69 143 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 73 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 73 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 36 A U - - MP 77 76 6 81 4 2 2 72 146 -7.609 -7.816 -0.033 -6.230 -4.247 -3.052 -4.372 3.392 -5.600 -6.399 -1.230 -4.484 -4.101 0.622 -4.716 1.322 -1.387 -5.196 -3.113 -3.090 ML 78 76 6 81 4 1 1 71 145 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 4 1 1 70 144 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 80 76 6 81 4 0 0 68 142 -4.568 -4.250 -2.265 -0.520 IL 81 81 5 81 4 1 1 72 146 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 82 82 6 82 3 1 1 71 146 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 14 - g - - - ML 83 82 6 85 3 1 1 70 144 -8.587 -0.501 -1.783 0.311 -0.838 0.497 -0.342 D 84 82 6 85 3 0 0 66 140 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 72 146 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 15 - a - - - ML 86 85 3 88 3 1 1 70 144 -8.105 -0.096 -4.039 0.586 -0.866 -0.671 0.403 D 87 85 3 88 3 0 0 59 133 -8.508 -4.021 -0.096 IL 88 88 3 88 3 1 1 71 145 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 16 - u - - - ML 89 88 3 91 3 1 1 69 144 -1.388 -0.718 -6.682 0.321 -0.865 -1.139 0.805 D 90 88 3 91 3 0 0 48 122 -8.652 -0.434 -1.959 IL 91 91 3 91 3 1 1 72 146 -0.359 -2.237 -6.958 0.000 0.000 0.000 0.000 [ MATL 23 ] 28 - A - - - ML 92 91 3 94 3 1 1 20 38 -8.508 -0.014 -7.162 1.672 -2.244 -2.170 -1.397 D 93 91 3 94 3 0 0 19 38 -6.987 -2.500 -0.295 IL 94 94 3 94 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 29 - A - - - ML 95 94 3 97 3 1 1 19 37 -8.508 -0.014 -7.162 1.622 -2.087 -2.052 -1.164 D 96 94 3 97 3 0 0 18 36 -6.987 -2.500 -0.295 IL 97 97 3 97 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 30 - A - - - ML 98 97 3 100 3 1 1 17 36 -2.535 -0.400 -3.846 1.875 -3.460 -2.991 -3.114 D 99 97 3 100 3 0 0 16 34 -6.987 -0.719 -1.378 IL 100 100 3 100 3 1 1 18 36 -2.097 -0.453 -4.797 0.000 0.000 0.000 0.000 [ MATL 26 ] 32 - C - - - ML 101 100 3 103 3 1 1 16 34 -8.499 -0.014 -7.153 -1.978 1.653 -2.134 -1.417 D 102 100 3 103 3 0 0 15 34 -7.056 -2.569 -0.279 IL 103 103 3 103 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 33 - A - - - ML 104 103 3 106 3 1 1 14 33 -8.499 -0.014 -7.153 1.873 -3.442 -2.974 -3.094 D 105 103 3 106 3 0 0 14 33 -7.056 -2.569 -0.279 IL 106 106 3 106 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 34 - G - - - ML 107 106 3 109 3 1 1 13 31 -8.499 -0.014 -7.153 -2.655 -4.010 1.881 -3.382 D 108 106 3 109 3 0 0 13 31 -7.056 -0.676 -1.448 IL 109 109 3 109 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 35 - C - - - ML 110 109 3 112 2 1 1 1 1 * 0.000 -3.218 1.863 -4.006 -2.367 D 111 109 3 112 2 0 0 0 0 * 0.000 IL 112 112 3 112 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 113 112 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 114 63 1 115 3 0 2 48 68 -8.587 -0.013 -7.241 IL 115 115 2 115 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 39 - C - - - ML 116 115 2 118 3 1 2 48 67 -8.587 -0.013 -7.241 -0.236 1.238 -2.084 -0.845 D 117 115 2 118 3 0 0 47 66 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 40 - A - - - ML 119 118 3 121 3 1 2 47 66 -8.587 -0.013 -7.241 1.888 -3.610 -3.129 -3.278 D 120 118 3 121 3 0 0 46 65 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 41 - A - - - ML 122 121 3 124 5 1 1 46 65 -7.650 -0.062 -5.085 -7.678 -8.569 1.888 -3.610 -3.129 -3.278 D 123 121 3 124 5 0 0 45 64 -4.959 -0.803 -4.221 -2.596 -2.508 IL 124 124 3 124 5 1 1 47 66 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 42 76 G C - - MP 125 124 3 129 6 2 2 45 64 -9.377 -9.316 -0.017 -8.093 -8.372 -8.767 -4.867 -3.282 -4.940 0.009 -5.524 -4.843 -0.926 -5.329 -4.559 3.590 -0.037 -1.013 -1.245 -4.551 -2.921 -3.882 ML 126 124 3 129 6 1 1 44 63 -6.536 -6.882 -0.970 -1.291 -6.732 -4.261 0.174 -0.701 0.461 -0.185 MR 127 124 3 129 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 3 129 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 43 75 U G - - MP 131 130 6 135 6 2 2 43 62 -9.396 -9.336 -0.017 -8.112 -8.392 -8.787 -5.023 -5.107 -4.567 -1.356 -3.107 -4.859 1.198 -3.958 -4.631 -1.253 -4.848 -3.232 1.431 -5.001 3.260 -3.461 ML 132 130 6 135 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 44 74 G C - - MP 137 136 6 141 6 2 2 41 60 -9.396 -9.336 -0.017 -8.112 -8.392 -8.787 -5.930 -3.680 -6.253 -0.647 -6.869 -5.132 -1.941 -6.502 -5.023 3.828 -5.294 -1.448 -2.304 -5.221 -4.061 -5.114 ML 138 136 6 141 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 45 73 C G - - MP 143 142 6 147 4 2 2 39 58 -7.609 -7.816 -0.033 -6.230 -5.937 -5.959 -5.372 -2.127 -3.857 -5.600 3.823 -4.811 -5.507 -2.022 -5.578 -3.969 -0.530 -5.908 -1.637 -4.314 ML 144 142 6 147 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 4 1 1 39 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 146 142 6 147 4 0 0 38 58 -4.568 -4.250 -2.265 -0.520 IL 147 147 5 147 4 1 1 41 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 148 148 6 148 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 46 - C - - - ML 149 148 6 151 5 1 1 37 56 -7.650 -0.026 -7.465 -7.678 -8.569 -3.218 1.863 -4.006 -2.367 D 150 148 6 151 5 0 0 36 54 -4.959 -0.803 -4.221 -2.596 -2.508 IL 151 151 3 151 5 1 1 37 56 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 47 72 U A - - MP 152 151 3 156 6 2 2 36 55 -9.396 -9.336 -0.017 -8.112 -8.392 -8.787 -5.867 -5.712 -5.506 -1.933 -4.158 -5.912 0.172 -4.947 -5.501 -1.853 -5.794 -3.574 3.774 -5.925 -1.794 -4.062 ML 153 151 3 156 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 3 156 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 3 156 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 48 71 U G - - MP 158 157 6 162 6 2 2 34 53 -5.029 -9.336 -0.060 -8.112 -8.392 -8.787 -5.252 -5.218 -4.710 -1.472 -3.200 -4.976 1.097 -4.052 -4.766 -1.462 -4.954 -3.205 0.121 -5.228 3.520 -3.592 ML 159 157 6 162 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 33 52 -3.012 -3.275 -0.522 -4.930 -5.706 -5.366 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 50 70 u a - - MP 164 163 6 168 4 2 2 32 51 -2.170 -2.107 -0.910 -6.230 -3.150 -3.223 -3.216 0.190 -2.612 -3.955 1.479 -3.183 -3.243 0.279 -3.738 -1.478 2.253 -3.407 1.866 0.200 ML 165 163 6 168 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 168 168 5 168 4 1 1 31 50 -2.052 -2.318 -0.872 -6.385 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 30 49 -1.634 -1.286 -1.900 0.000 0.000 0.000 0.000 [ MATL 43 ] 53 - C - - - ML 170 169 6 172 5 1 1 28 47 -7.421 -0.031 -7.236 -7.448 -8.340 -1.358 1.273 -2.221 -0.030 D 171 169 6 172 5 0 0 27 46 -6.154 -0.298 -5.415 -3.790 -3.703 IL 172 172 3 172 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 54 67 u a - - MP 173 172 3 177 6 2 2 27 46 -9.396 -9.336 -0.017 -8.112 -8.392 -8.787 -4.394 -4.409 -4.186 -0.667 -2.989 -4.672 1.343 -3.752 -4.209 -0.521 -4.551 -2.450 2.984 -4.501 1.763 -3.073 ML 174 172 3 177 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 175 172 3 177 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 176 172 3 177 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 177 177 5 177 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 178 178 6 178 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 55 66 g c - - MP 179 178 6 183 4 2 2 25 44 -7.609 -7.816 -0.033 -6.230 -3.484 -0.866 -3.497 0.946 -4.113 -1.799 0.203 -4.006 -3.656 2.996 -3.970 1.081 -0.051 -3.379 -1.662 -2.521 ML 180 178 6 183 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 181 178 6 183 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 182 178 6 183 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 183 183 5 183 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 184 184 6 184 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 56 - C - - - ML 185 184 6 187 3 1 1 22 41 -8.587 -0.013 -7.241 -3.218 1.863 -4.006 -2.367 D 186 184 6 187 3 0 0 21 40 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 57 - A - - - ML 188 187 3 190 3 1 1 21 40 -8.587 -0.013 -7.241 1.888 -3.610 -3.129 -3.278 D 189 187 3 190 3 0 0 20 39 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 58 - G - - - ML 191 190 3 193 3 1 1 20 39 -8.587 -0.013 -7.241 -0.822 -1.115 1.157 -0.428 D 192 190 3 193 3 0 0 19 38 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 59 - U - - - ML 194 193 3 196 3 1 1 19 37 -3.003 -0.266 -4.521 -1.048 -1.650 -2.296 1.582 D 195 193 3 196 3 0 0 16 35 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 20 38 -1.507 -0.704 -4.863 0.000 0.000 0.000 0.000 [ MATL 50 ] 62 - U - - - ML 197 196 3 199 3 1 1 16 34 -8.532 -0.014 -7.187 -0.476 -0.661 -0.658 1.011 D 198 196 3 199 3 0 0 15 34 -6.784 -0.867 -1.175 IL 199 199 3 199 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 63 - u - - - ML 200 199 3 202 3 1 1 14 33 -8.587 -0.013 -7.241 0.183 -0.249 -1.319 0.699 D 201 199 3 202 3 0 0 15 33 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 64 - u - - - ML 203 202 3 205 3 1 1 13 31 -8.587 -0.013 -7.241 -0.037 -0.397 -1.427 0.921 D 204 202 3 205 3 0 0 13 32 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 65 - u - - - ML 206 205 3 208 2 1 1 1 1 * 0.000 -0.290 -0.235 -1.535 0.991 D 207 205 3 208 2 0 0 0 0 * 0.000 IL 208 208 3 208 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 209 208 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Vimentin3 ACC RF00109 DESC Vimentin 3' UTR protein-binding region LENG 67 MAXL 166 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 23:53:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00109/CM NSEQ 19 EFFN 5.802979 CKSUM 136239184 STATS LOCAL MSV -7.9526 0.71910 STATS LOCAL VITERBI -9.0045 0.71910 STATS LOCAL FORWARD -3.7414 0.71910 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23901 1.55830 1.50361 1.28190 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 0.00000 * 1 1.29081 2.24547 1.49622 0.92862 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 2 1.39453 1.66982 1.98096 0.85370 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 3 1.44998 0.85970 2.64251 1.30580 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 4 0.89768 2.41270 0.89998 2.33990 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 5 1.41096 1.68156 1.76914 0.91747 5 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 6 0.52772 3.36770 1.10484 3.11629 6 A - - ( 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 7 1.61365 1.67126 1.80269 0.80302 7 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 8 1.78194 1.00991 1.90311 1.14467 8 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 9 2.64454 1.78037 1.73102 0.53908 9 U - - ( 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 10 1.71948 1.75482 1.58359 0.81494 10 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 11 0.08821 4.23840 2.93246 4.09042 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 12 0.22294 4.10171 1.82964 3.78012 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 13 0.32572 3.99853 1.45125 3.67409 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 14 1.17528 2.02072 0.97559 1.70520 14 g - - _ 1.38629 1.38629 1.38629 1.38629 0.39241 4.37308 1.16488 1.46634 0.26236 1.09861 0.40547 15 0.94471 2.08478 1.89172 1.09046 15 a - - _ 1.38629 1.38629 1.38629 1.38629 0.09605 4.01734 2.60940 1.46634 0.26236 3.28596 0.03812 16 1.15192 2.11095 2.30463 0.76992 16 u - - _ 1.38629 1.38629 1.38629 1.38629 0.60118 0.83753 3.96015 1.87099 0.16720 0.24333 1.53252 17 0.17195 3.24463 3.22622 2.53470 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02708 4.31544 4.31544 1.46634 0.26236 2.00705 0.14432 18 0.20312 3.12198 3.12967 2.34322 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02708 4.31544 4.31544 1.46634 0.26236 2.00705 0.14432 19 0.05243 4.27067 3.91287 4.06744 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.32067 1.63524 2.53285 0.13187 2.09112 0.31303 1.31390 20 3.24032 0.16015 3.05119 2.78818 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02727 4.30868 4.30868 1.46634 0.26236 2.07257 0.13452 21 0.05310 4.25817 3.90105 4.05432 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02727 4.30868 4.30868 1.46634 0.26236 2.07257 0.13452 22 3.67157 4.65359 0.05147 4.18611 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02727 4.30868 4.30868 1.46634 0.26236 0.28998 1.37942 23 4.13644 0.05774 4.61654 3.49861 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 24 3.84105 2.64088 3.75789 0.12341 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 25 3.93627 2.75680 3.85521 0.11002 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 26 4.23972 3.32559 4.00683 0.07102 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 27 1.60913 0.42619 3.19585 2.24420 39 C - - , 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 28 0.04715 4.37466 4.01157 4.17579 40 A - - , 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 29 0.04715 4.37466 4.01157 4.17579 41 A - - , 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 30 2.88511 3.68327 0.11620 3.55052 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 31 3.73303 2.14048 3.65883 0.18306 43 U - - < 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 32 3.31753 4.26176 0.06756 4.20051 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 33 4.36941 0.07189 4.29954 3.14343 45 C - - < 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 34 4.13644 0.05774 4.61654 3.49861 46 C - - - 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 35 4.49790 3.16205 4.38638 0.06819 47 U - - < 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 36 3.82806 2.20594 3.71418 0.16993 48 U - - < 1.38629 1.38629 1.38629 1.38629 0.08927 2.62025 4.37308 0.31654 1.30440 1.09861 0.40547 37 2.83587 1.89586 2.67720 0.32519 50 U - - < 1.38629 1.38629 1.38629 1.38629 0.53585 1.46603 1.69289 0.30733 1.32956 1.09861 0.40547 38 2.63921 0.41441 3.27008 1.47032 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.03091 4.18509 4.18509 1.46634 0.26236 0.12848 2.11553 39 3.48094 2.05038 3.31083 0.21809 54 U - - < 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 40 1.87781 2.48059 0.37408 2.58415 55 G - - < 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 41 4.13644 0.05774 4.61654 3.49861 56 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 42 0.04715 4.37466 4.01157 4.17579 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 43 2.17639 2.25731 0.49015 1.77560 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 44 2.26757 2.82751 3.32148 0.22167 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.21568 1.94873 2.96514 0.49315 0.94340 1.09861 0.40547 45 1.81620 1.90865 1.85031 0.63132 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02660 4.33336 4.33336 1.46634 0.26236 0.39830 1.11309 46 1.25426 1.56138 2.43674 0.87366 63 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 47 1.42959 1.68650 2.53167 0.70138 64 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 48 1.64198 1.55079 2.63020 0.64959 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 49 2.82616 0.51926 2.53861 1.32116 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 50 0.57310 3.44189 1.01098 3.21000 67 A - - > 1.38629 1.38629 1.38629 1.38629 0.37511 1.20339 4.37308 0.39147 1.12721 1.09861 0.40547 51 1.04160 2.84554 0.83556 1.86190 70 g - - > 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 52 2.81352 3.89275 0.11553 3.55016 71 G - - > 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 53 0.07973 4.55052 2.98208 4.17461 72 A - - > 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 54 3.43163 4.48908 0.06001 4.22157 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 55 4.39965 0.07866 4.19076 3.03177 74 C - - > 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 56 1.77027 3.87984 0.24616 3.60217 75 G - - > 1.38629 1.38629 1.38629 1.38629 0.05412 4.37308 3.21714 1.46634 0.26236 1.09861 0.40547 57 3.91918 0.20946 2.29832 2.67816 76 C - - > 1.38629 1.38629 1.38629 1.38629 0.02628 4.34524 4.34524 1.46634 0.26236 0.48829 0.95108 58 0.82377 1.91040 1.57722 1.57670 77 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 59 0.68162 1.81975 1.41763 2.40962 78 A - - ) 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 60 1.89579 2.27943 0.58643 1.65471 79 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 61 0.98024 1.97011 1.25389 1.60971 80 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 62 2.25716 2.35889 3.15452 0.27685 81 U - - ) 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 63 1.02668 1.93577 1.38409 1.39861 82 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 64 1.72739 2.53331 0.45883 2.19969 83 G - - : 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 65 0.90332 2.29749 1.52955 1.28146 84 a - - : 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 66 1.86411 2.38137 1.46250 0.65223 85 U - - : 1.38629 1.38629 1.38629 1.38629 0.02555 4.37308 4.37308 1.46634 0.26236 1.09861 0.40547 67 0.75032 2.09242 2.45101 1.14511 86 a - - : 1.38629 1.38629 1.38629 1.38629 0.01286 4.36039 * 1.46634 0.26236 0.00000 * //