INFERNAL1/a [1.1.5 | Sep 2023] NAME snoPyro_CD ACC RF00095 DESC Pyrococcus C/D box small nucleolar RNA STATES 178 NODES 57 CLEN 58 W 77 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 13:40:37 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/updates/WK_links/RF00095/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 25 EFFN 25.000000 CKSUM 2034546437 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 45.10 NC 44.50 EFP7GF -17.3666 0.72079 ECMLC 0.70893 -6.36951 1.83012 1600000 401521 0.002989 ECMGC 0.33840 -27.43198 -12.00666 1600000 73973 0.005407 ECMLI 0.60090 -6.72604 2.68087 1600000 342045 0.003508 ECMGI 0.34975 -24.09516 -9.39404 1600000 68400 0.005848 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 77 103 -10.915 -10.854 -0.125 -9.631 -9.910 -3.648 IL 1 1 2 1 6 6 29 79 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 7 29 79 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 63 g c - - MP 3 2 3 7 6 10 30 77 103 -10.796 -10.735 -0.007 -9.512 -9.792 -10.187 0.075 -2.656 -0.925 1.378 -2.639 -3.495 0.474 -0.939 -0.037 1.938 -0.767 -0.456 0.734 -0.777 -0.909 -0.739 ML 4 2 3 7 6 6 27 76 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 6 26 76 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 3 24 73 98 -11.555 -10.254 -6.051 -6.733 -6.750 -0.051 IL 7 7 5 7 6 6 28 77 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 6 28 77 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 62 g c - - MP 9 8 6 13 6 8 28 75 101 -10.796 -10.735 -0.007 -9.512 -9.792 -10.187 -1.004 -0.815 -3.174 0.542 -1.114 -4.000 1.337 -3.523 -3.266 2.609 -3.811 -0.291 1.008 -3.287 -0.266 -2.391 ML 10 8 6 13 6 5 25 74 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 5 24 74 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 3 24 73 98 -11.555 -10.254 -6.051 -0.263 -6.750 -2.826 IL 13 13 5 13 6 5 26 75 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 5 26 75 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 61 g c - - MP 15 14 6 19 4 6 26 73 99 -9.719 -9.926 -0.008 -8.340 -4.092 -3.585 -4.142 1.549 -4.204 -4.897 1.880 -4.461 -1.116 2.570 -0.969 -1.505 0.460 -4.180 -1.959 -3.200 ML 16 14 6 19 4 5 25 73 98 -5.661 -5.843 -0.119 -4.573 0.300 -1.750 1.019 -1.169 MR 17 14 6 19 4 4 23 73 98 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 18 14 6 19 4 3 22 72 97 -4.568 -4.250 -2.265 -0.520 IL 19 19 5 19 4 5 25 74 100 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 5 25 74 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 21 20 6 23 3 4 24 71 97 -10.789 -0.266 -2.575 0.468 -4.979 1.348 -4.637 D 22 20 6 23 3 2 21 70 95 -6.174 -1.687 -0.566 IL 23 23 3 23 3 5 25 73 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 24 23 3 26 3 5 25 71 96 -10.526 -0.003 -9.180 1.786 -4.836 -1.065 -4.715 D 25 23 3 26 3 2 21 70 95 -9.747 -0.086 -4.139 IL 26 26 3 26 3 3 22 72 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 27 26 3 29 3 5 25 70 95 -10.789 -0.003 -9.443 -6.198 -5.636 -7.079 1.985 D 28 26 3 29 3 1 17 68 93 -6.174 -1.687 -0.566 IL 29 29 3 29 3 3 21 71 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 30 29 3 32 3 4 24 69 94 -10.789 -0.003 -9.443 -5.498 -7.208 1.985 -6.248 D 31 29 3 32 3 1 16 67 92 -6.174 -1.687 -0.566 IL 32 32 3 32 3 3 20 70 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 33 32 3 35 3 4 23 68 93 -10.789 -0.003 -9.443 1.988 -6.854 -6.202 -6.382 D 34 32 3 35 3 1 16 66 91 -6.174 -1.687 -0.566 IL 35 35 3 35 3 3 20 69 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 36 35 3 38 3 4 23 67 92 -10.789 -0.003 -9.443 -4.348 -0.988 -5.091 1.773 D 37 35 3 38 3 1 15 65 90 -6.174 -1.687 -0.566 IL 38 38 3 38 3 3 19 68 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 39 38 3 41 3 4 22 66 91 -10.789 -0.003 -9.443 -5.498 -7.208 1.985 -6.248 D 40 38 3 41 3 1 14 64 89 -6.174 -1.687 -0.566 IL 41 41 3 41 3 2 19 67 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 42 41 3 44 3 4 22 65 90 -10.789 -0.003 -9.443 1.795 -4.289 -4.543 -1.198 D 43 41 3 44 3 1 14 63 88 -6.174 -1.687 -0.566 IL 44 44 3 44 3 2 18 66 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 45 44 3 47 3 4 21 64 89 -10.789 -0.003 -9.443 0.143 -3.478 1.189 -0.924 D 46 44 3 47 3 0 13 62 87 -6.174 -1.687 -0.566 IL 47 47 3 47 3 2 18 65 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - c - - - ML 48 47 3 50 3 3 20 63 88 -10.789 -0.003 -9.443 0.064 0.218 0.007 -0.346 D 49 47 3 50 3 0 13 61 86 -6.174 -1.687 -0.566 IL 50 50 3 50 3 2 17 64 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - c - - - ML 51 50 3 53 3 3 19 62 87 -10.789 -0.003 -9.443 -0.197 0.577 -1.734 0.417 D 52 50 3 53 3 0 13 60 85 -6.174 -1.687 -0.566 IL 53 53 3 53 3 2 16 63 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - u - - - ML 54 53 3 56 3 3 18 61 86 -10.789 -0.003 -9.443 -1.574 0.605 -2.011 0.922 D 55 53 3 56 3 0 12 59 84 -6.174 -1.687 -0.566 IL 56 56 3 56 3 2 16 62 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - u - - - ML 57 56 3 59 3 3 17 60 85 -2.048 -0.402 -9.443 -0.702 -1.146 -0.016 0.960 D 58 56 3 59 3 0 12 57 83 -6.174 -1.687 -0.566 IL 59 59 3 59 3 2 17 59 85 -3.755 -0.129 -6.455 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - G - - - ML 60 59 3 62 3 3 16 58 83 -10.789 -0.003 -9.443 -2.801 0.443 1.133 -1.720 D 61 59 3 62 3 0 12 56 82 -6.174 -1.687 -0.566 IL 62 62 3 62 3 2 15 59 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - C - - - ML 63 62 3 65 3 3 16 57 82 -10.789 -0.003 -9.443 -2.397 1.788 -1.816 -3.760 D 64 62 3 65 3 0 11 55 81 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 14 58 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - C - - - ML 66 65 3 68 3 2 15 56 81 -10.789 -0.003 -9.443 -0.495 1.310 -3.934 -0.425 D 67 65 3 68 3 0 11 54 80 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 14 57 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - c - - - ML 69 68 3 71 3 1 14 55 80 -10.789 -0.078 -4.264 0.065 0.227 -0.474 0.089 D 70 68 3 71 3 0 10 54 79 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 13 56 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - c - - - ML 72 71 3 74 3 2 14 54 79 -10.714 -0.003 -9.368 -0.844 0.338 0.280 -0.051 D 73 71 3 74 3 0 10 53 78 -8.283 -0.251 -2.675 IL 74 74 3 74 3 1 12 55 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - a - - - ML 75 74 3 77 3 2 13 53 78 -10.789 -0.003 -9.443 0.712 -0.029 -0.563 -0.506 D 76 74 3 77 3 0 8 51 77 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 11 54 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - c - - - ML 78 77 3 80 3 2 12 52 77 -3.374 -0.149 -9.443 -0.062 0.566 -0.693 -0.084 D 79 77 3 80 3 0 7 50 75 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 12 52 77 -2.808 -0.260 -5.508 0.000 0.000 0.000 0.000 [ MATL 24 ] 26 - C - - - ML 81 80 3 83 3 1 11 51 76 -10.789 -0.003 -9.443 -6.147 1.982 -6.598 -5.250 D 82 80 3 83 3 0 7 49 74 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 10 52 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - U - - - ML 84 83 3 86 3 1 10 50 75 -10.789 -0.003 -9.443 -6.198 -5.636 -7.079 1.985 D 85 83 3 86 3 0 6 48 73 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 10 51 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 28 - G - - - ML 87 86 3 89 3 1 9 49 74 -10.789 -0.003 -9.443 -5.498 -7.208 1.985 -6.248 D 88 86 3 89 3 0 6 47 72 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 9 50 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - A - - - ML 90 89 3 92 3 1 8 48 73 -10.789 -0.003 -9.443 1.988 -6.854 -6.202 -6.382 D 91 89 3 92 3 0 6 46 71 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 8 49 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - G - - - ML 93 92 3 95 3 1 7 47 72 -10.789 -0.003 -9.443 0.312 -3.649 1.194 -1.356 D 94 92 3 95 3 0 5 45 71 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 7 48 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 31 - u - - - ML 96 95 3 98 3 1 6 46 71 -10.789 -0.790 -1.248 0.080 0.047 -0.315 0.145 D 97 95 3 98 3 0 5 44 70 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 6 48 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 32 - a - - - ML 99 98 3 101 3 1 5 46 71 -2.214 -2.443 -0.736 0.586 -0.733 -0.508 0.256 D 100 98 3 101 3 0 6 38 62 -11.006 -0.035 -5.398 IL 101 101 3 101 3 1 6 47 72 -1.054 -1.341 -3.017 0.000 0.000 0.000 0.000 [ MATL 31 ] 36 - G - - - ML 102 101 3 104 3 1 6 37 56 -10.093 -0.005 -8.747 -4.813 -6.435 1.975 -5.551 D 103 101 3 104 3 0 3 36 55 -10.877 -0.039 -5.269 IL 104 104 3 104 3 1 4 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 37 - G - - - ML 105 104 3 107 3 1 6 36 55 -10.789 -0.003 -9.443 -0.022 -4.960 1.556 -4.544 D 106 104 3 107 3 0 1 36 54 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 4 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 38 - U - - - ML 108 107 3 110 3 1 5 35 53 -10.789 -0.003 -9.443 -6.198 -5.636 -7.079 1.985 D 109 107 3 110 3 0 1 35 53 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 3 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 39 - G - - - ML 111 110 3 113 3 1 5 34 52 -10.789 -0.003 -9.443 -5.498 -7.208 1.985 -6.248 D 112 110 3 113 3 0 1 33 52 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 3 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 40 - A - - - ML 114 113 3 116 3 1 5 33 51 -10.789 -0.003 -9.443 1.988 -6.854 -6.202 -6.382 D 115 113 3 116 3 0 1 32 51 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 3 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 41 - U - - - ML 117 116 3 119 3 1 5 32 50 -10.789 -0.003 -9.443 -6.198 -5.636 -7.079 1.985 D 118 116 3 119 3 0 1 31 50 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 3 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - G - - - ML 120 119 3 122 3 1 5 31 49 -10.789 -0.003 -9.443 -5.498 -7.208 1.985 -6.248 D 121 119 3 122 3 0 1 30 49 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 3 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - A - - - ML 123 122 3 125 3 1 4 30 48 -10.789 -0.003 -9.443 1.988 -6.854 -6.202 -6.382 D 124 122 3 125 3 0 0 29 48 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 2 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - G - - - ML 126 125 3 128 3 1 4 29 47 -10.789 -0.003 -9.443 -0.518 -3.772 1.522 -1.485 D 127 125 3 128 3 0 0 28 47 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 2 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - G - - - ML 129 128 3 131 3 1 3 27 46 -10.789 -0.003 -9.443 -1.603 -0.005 1.241 -1.692 D 130 128 3 131 3 0 0 27 46 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 2 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 46 - a - - - ML 132 131 3 134 3 1 2 26 45 -10.789 -0.101 -3.904 0.939 0.082 -1.032 -0.903 D 133 131 3 134 3 0 0 26 45 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 2 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 47 - c - - - ML 135 134 3 137 3 1 2 25 44 -10.691 -0.160 -3.263 -2.548 0.956 -0.333 0.131 D 136 134 3 137 3 0 0 24 43 -8.575 -4.088 -0.091 IL 137 137 3 137 3 1 2 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 48 - u - - - ML 138 137 3 140 3 1 2 24 43 -10.535 -0.003 -9.189 -0.333 -0.023 -0.052 0.330 D 139 137 3 140 3 0 0 23 42 -9.706 -0.089 -4.097 IL 140 140 3 140 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - c - - - ML 141 140 3 143 3 1 1 23 42 -10.789 -0.152 -3.331 -0.896 0.548 0.052 -0.052 D 142 140 3 143 3 0 0 23 42 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - C - - - ML 144 143 3 146 3 1 1 22 41 -10.640 -0.003 -9.294 -2.645 1.095 -0.813 0.182 D 145 143 3 146 3 0 0 21 40 -9.064 -0.141 -3.456 IL 146 146 3 146 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 51 - G - - - ML 147 146 3 149 3 1 1 21 40 -10.789 -0.473 -1.843 -0.156 -0.850 1.287 -3.207 D 148 146 3 149 3 0 0 21 40 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 52 - G - - - ML 150 149 3 152 3 1 1 20 39 -10.320 -0.338 -2.265 -0.185 -1.216 1.348 -2.790 D 151 149 3 152 3 0 0 19 38 -10.435 -0.053 -4.826 IL 152 152 3 152 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 53 - u - - - ML 153 152 3 155 3 1 1 19 38 -10.556 -0.003 -9.210 0.392 -0.779 -2.662 0.961 D 154 152 3 155 3 0 0 18 37 -9.601 -0.096 -3.992 IL 155 155 3 155 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 54 - U - - - ML 156 155 3 158 3 1 1 18 36 -10.789 -0.003 -9.443 -1.292 -2.990 0.110 1.255 D 157 155 3 158 3 0 0 19 37 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 55 - a - - - ML 159 158 3 161 3 1 1 17 35 -10.789 -0.003 -9.443 0.304 -0.240 -0.168 0.041 D 160 158 3 161 3 0 0 18 36 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 56 - G - - - ML 162 161 3 164 3 1 1 15 34 -10.789 -0.003 -9.443 -0.697 -3.410 1.292 -0.251 D 163 161 3 164 3 0 0 17 35 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 57 - C - - - ML 165 164 3 167 3 1 1 14 33 -10.789 -0.003 -9.443 -6.147 1.982 -6.598 -5.250 D 166 164 3 167 3 0 0 16 34 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 58 - U - - - ML 168 167 3 170 3 1 1 13 31 -10.789 -0.003 -9.443 -6.198 -5.636 -7.079 1.985 D 169 167 3 170 3 0 0 15 33 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 59 - G - - - ML 171 170 3 173 3 1 1 11 30 -10.789 -0.003 -9.443 -5.498 -7.208 1.985 -6.248 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 60 - A - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 1.988 -6.854 -6.202 -6.382 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME snoPyro_CD ACC RF00095 DESC Pyrococcus C/D box small nucleolar RNA LENG 58 MAXL 118 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 13:40:37 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/updates/WK_links/RF00095/CM NSEQ 25 EFFN 24.160767 CKSUM 2034546437 STATS LOCAL MSV -8.0124 0.72079 STATS LOCAL VITERBI -8.9814 0.72079 STATS LOCAL FORWARD -4.3363 0.72079 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39990 1.62428 1.14579 1.43400 1.38629 1.38629 1.38629 1.38629 0.10665 5.60580 2.32803 1.46634 0.26236 0.00000 * 1 1.30746 1.98942 0.96759 1.54778 1 g - - < 1.38629 1.38629 1.38629 1.38629 0.00815 5.50729 5.50729 1.46634 0.26236 3.35049 0.03570 2 1.79594 1.62620 0.82156 1.62147 2 g - - < 1.38629 1.38629 1.38629 1.38629 0.00815 5.50729 5.50729 1.46634 0.26236 0.07272 2.65734 3 1.59368 1.48263 0.78631 2.16926 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 4 1.06267 4.79662 0.45299 4.55800 4 G - - _ 1.38629 1.38629 1.38629 1.38629 0.18837 5.60580 1.78371 1.46634 0.26236 1.09861 0.40547 5 0.14905 4.70122 2.12446 4.61620 5 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00884 5.42627 5.42627 1.46634 0.26236 0.04283 3.17178 6 5.62929 5.24597 6.23663 0.01088 6 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 7 5.16746 6.34938 0.01090 5.68650 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 8 0.00889 6.10009 5.65084 5.77730 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 9 4.36385 2.07159 4.87887 0.15820 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 10 5.16746 6.34938 0.01090 5.68650 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 11 0.14287 4.32522 4.49923 2.21838 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 12 1.28793 3.76291 0.56414 2.02424 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 13 1.34039 1.23795 1.38381 1.62123 13 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 14 1.52082 0.98876 2.57934 1.09779 14 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 15 2.46534 0.96847 2.77302 0.74891 15 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 16 1.86537 2.17528 1.39989 0.72369 16 u - - _ 1.38629 1.38629 1.38629 1.38629 0.28196 1.41874 5.60580 0.03011 3.51793 1.09861 0.40547 17 3.29326 1.08300 0.60235 2.56697 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 18 3.04386 0.14809 2.64896 3.94894 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 19 1.72952 0.48018 4.07882 1.67649 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 20 1.34023 1.23127 1.71502 1.32301 21 c - - _ 1.38629 1.38629 1.38629 1.38629 0.05903 5.60580 2.92535 1.46634 0.26236 1.09861 0.40547 21 1.96240 1.15510 1.19553 1.41919 22 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00777 5.55454 5.55454 1.46634 0.26236 0.12845 2.11576 22 0.89432 1.40796 1.77605 1.73067 23 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 23 1.42734 0.99758 1.86565 1.44186 24 c - - _ 1.38629 1.38629 1.38629 1.38629 0.10768 2.31862 5.60580 0.07311 2.65209 1.09861 0.40547 24 5.61289 0.01320 5.92636 4.99193 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 25 5.62929 5.24597 6.23663 0.01088 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 26 5.16746 6.34938 0.01090 5.68650 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 27 0.00889 6.10009 5.65084 5.77730 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 28 1.17137 3.88128 0.55983 2.32149 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 29 1.32973 1.35563 1.60519 1.28440 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.54792 5.60580 0.87186 1.46634 0.26236 1.09861 0.40547 30 0.98228 1.89059 1.73750 1.20865 32 a - - _ 1.38629 1.38629 1.38629 1.38629 1.65016 1.53079 0.52490 0.58647 0.81258 0.01743 4.05822 31 4.69098 5.81007 0.01784 5.20139 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01125 5.18616 5.18616 1.46634 0.26236 0.02100 3.87348 32 1.40248 4.78350 0.30859 4.49503 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 33 5.62929 5.24597 6.23663 0.01088 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 34 5.16746 6.34938 0.01090 5.68650 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 35 0.00889 6.10009 5.65084 5.77730 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 36 5.62929 5.24597 6.23663 0.01088 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 37 5.16746 6.34938 0.01090 5.68650 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 38 0.00889 6.10009 5.65084 5.77730 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 39 1.74498 3.97196 0.33276 2.41274 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 40 2.48498 1.39326 0.52737 2.54777 45 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 41 0.73738 1.33173 2.09842 2.00276 46 a - - _ 1.38629 1.38629 1.38629 1.38629 0.07464 5.60580 2.68463 1.46634 0.26236 1.09861 0.40547 42 3.11574 0.72638 1.61992 1.29432 47 c - - _ 1.38629 1.38629 1.38629 1.38629 0.11556 5.53905 2.25187 1.46634 0.26236 3.02350 0.04985 43 1.61202 1.40391 1.42434 1.15768 48 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00878 5.43228 5.43228 1.46634 0.26236 0.04413 3.14265 44 1.99789 1.00984 1.35301 1.42030 49 c - - _ 1.38629 1.38629 1.38629 1.38629 0.10986 5.60580 2.29892 1.46634 0.26236 1.09861 0.40547 45 3.18449 0.62970 1.95130 1.25963 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00817 5.50411 5.50411 1.46634 0.26236 0.07070 2.68444 46 1.49445 1.97765 0.49564 3.57365 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.33024 5.60580 1.28166 1.46634 0.26236 1.09861 0.40547 47 1.51408 2.22942 0.45408 3.28691 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.23908 5.28574 1.57220 1.46634 0.26236 0.02615 3.65714 48 1.11615 1.92254 3.20174 0.72250 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 0.04763 3.06802 49 2.27009 3.42442 1.31311 0.51895 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 50 1.17546 1.55360 1.50433 1.35606 55 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 51 1.86568 3.71698 0.49260 1.56128 56 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 52 5.61289 0.01320 5.92636 4.99193 57 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 53 5.62929 5.24597 6.23663 0.01088 58 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 54 5.16746 6.34938 0.01090 5.68650 59 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00738 5.60580 5.60580 1.46634 0.26236 1.09861 0.40547 55 0.00889 6.10009 5.65084 5.77730 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.10665 5.60580 2.32803 1.46634 0.26236 1.09861 0.40547 56 2.08977 0.96811 1.26898 1.53543 61 c - - > 1.38629 1.38629 1.38629 1.38629 0.00815 5.50729 5.50729 1.46634 0.26236 3.35049 0.03570 57 1.64426 0.85976 1.50393 1.82432 62 c - - > 1.38629 1.38629 1.38629 1.38629 0.00815 5.50729 5.50729 1.46634 0.26236 3.35049 0.03570 58 1.42337 1.23883 1.65266 1.28073 63 c - - > 1.38629 1.38629 1.38629 1.38629 0.00408 5.50323 * 1.46634 0.26236 0.00000 * //