INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD18 ACC RF00093 DESC Small nucleolar RNA SNORD18 STATES 217 NODES 69 CLEN 71 W 172 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 19:34:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00093/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 16 EFFN 5.097656 CKSUM 2605803411 NULL 0.000 0.000 0.000 0.000 GA 41.00 TC 41.00 NC 40.90 EFP7GF -11.8395 0.71872 ECMLC 0.64279 -6.13297 2.49730 1600000 307888 0.003898 ECMGC 0.38628 -16.22571 -2.42346 1600000 82707 0.004836 ECMLI 0.56898 -5.31445 4.01297 1600000 242114 0.004956 ECMGI 0.40419 -11.70473 0.75715 1600000 61602 0.006493 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 172 294 -9.533 -9.473 -0.066 -8.249 -4.782 -8.924 IL 1 1 2 1 6 1 28 173 296 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 28 173 296 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 102 u a - - MP 3 2 3 7 6 2 31 172 295 -9.484 -9.423 -0.016 -8.200 -8.479 -8.875 -1.671 -1.877 -1.868 1.221 -1.851 -2.718 1.303 -1.085 -1.934 1.039 -1.396 -0.556 1.870 -0.820 0.150 -0.446 ML 4 2 3 7 6 1 26 170 292 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 26 170 293 -7.594 -6.323 -0.847 -6.301 -1.435 -4.514 -0.269 -0.545 -0.898 0.962 D 6 2 3 7 6 0 21 166 288 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 27 171 294 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 27 171 294 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 101 a u - - MP 9 8 6 13 6 2 30 170 293 -9.533 -9.473 -0.016 -8.249 -8.529 -8.924 -1.661 -0.931 -1.864 1.382 -1.082 -2.701 1.261 -0.884 -0.528 1.232 -1.539 0.005 1.313 -2.000 -0.125 -0.574 ML 10 8 6 13 6 1 25 168 291 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 24 168 290 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 20 165 287 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 26 170 292 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 26 169 292 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 100 a u - - MP 15 14 6 19 6 2 28 168 291 -9.533 -9.473 -0.016 -8.249 -8.529 -8.924 -0.814 -1.453 -1.991 1.326 -1.991 -2.581 1.215 -2.263 -1.895 1.119 -1.189 0.848 1.149 -1.207 -0.219 0.224 ML 16 14 6 19 6 1 24 167 289 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 22 166 288 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 20 164 286 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 25 168 290 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 25 167 290 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 99 a u - - MP 21 20 6 25 4 2 26 166 289 -7.874 -8.081 -0.028 -6.495 -1.731 -0.166 -1.943 1.518 -1.938 -2.738 1.432 -0.934 -1.980 1.122 -2.521 -0.439 1.103 -1.290 -0.183 0.345 ML 22 20 6 25 4 1 23 165 288 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 21 164 286 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 19 163 285 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 25 166 288 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 24 166 288 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 27 26 6 29 3 1 25 164 287 -8.840 -0.011 -7.494 0.634 -0.407 -1.370 0.387 D 28 26 6 29 3 0 19 162 284 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 23 165 287 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 30 29 3 32 3 1 24 163 286 -8.840 -0.011 -7.494 1.555 -2.592 -0.564 -2.194 D 31 29 3 32 3 0 18 161 283 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 23 164 286 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 33 32 3 35 3 1 23 162 285 -8.840 -0.011 -7.494 -3.118 -2.856 -3.900 1.880 D 34 32 3 35 3 0 17 160 282 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 22 163 285 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 36 35 3 38 3 1 22 161 284 -8.840 -0.011 -7.494 -3.233 -4.644 1.922 -3.976 D 37 35 3 38 3 0 16 159 281 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 21 162 284 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 39 38 3 41 3 1 22 160 283 -8.840 -0.011 -7.494 1.919 -4.072 -3.561 -3.774 D 40 38 3 41 3 0 16 158 280 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 20 161 283 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 42 41 3 44 3 1 21 159 282 -8.840 -0.011 -7.494 -3.118 -2.856 -3.900 1.880 D 43 41 3 44 3 0 15 157 279 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 20 160 282 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 45 44 3 47 3 1 20 158 281 -8.840 -0.011 -7.494 -3.233 -4.644 1.922 -3.976 D 46 44 3 47 3 0 14 156 278 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 19 159 281 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 48 47 3 50 3 1 19 157 280 -8.840 -0.011 -7.494 1.919 -4.072 -3.561 -3.774 D 49 47 3 50 3 0 14 155 277 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 18 158 280 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - g - - - ML 51 50 3 53 3 1 18 157 279 -8.840 -0.011 -7.494 0.107 -0.764 0.265 0.179 D 52 50 3 53 3 0 13 154 276 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 17 157 279 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - c - - - ML 54 53 3 56 3 1 17 156 278 -8.840 -0.011 -7.494 -0.085 0.456 -1.013 0.251 D 55 53 3 56 3 0 12 153 275 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 16 156 278 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 57 56 3 59 3 1 16 155 277 -2.748 -0.242 -7.494 -0.084 -1.531 -1.930 1.292 D 58 56 3 59 3 0 12 152 274 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 16 155 277 -2.142 -0.437 -4.843 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - C - - - ML 60 59 3 62 3 1 15 153 276 -8.840 -0.011 -7.494 -0.866 1.255 -2.277 -0.221 D 61 59 3 62 3 0 11 150 273 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 15 154 276 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - c - - - ML 63 62 3 65 3 1 14 152 275 -8.840 -0.122 -3.662 0.323 0.980 -2.025 -0.915 D 64 62 3 65 3 0 10 149 271 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 15 153 275 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - A - - - ML 66 65 3 68 3 1 15 152 274 -8.730 -0.012 -7.384 1.711 -1.751 -2.364 -2.093 D 67 65 3 68 3 0 10 147 270 -7.342 -2.855 -0.225 IL 68 68 3 68 3 1 14 152 274 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - c - - - ML 69 68 3 71 3 1 14 151 273 -8.730 -0.012 -7.384 -0.730 0.795 -1.887 0.477 D 70 68 3 71 3 0 10 147 269 -7.342 -2.855 -0.225 IL 71 71 3 71 3 1 14 151 273 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - U - - - ML 72 71 3 74 3 1 13 150 272 -8.730 -0.219 -2.853 -1.811 -0.641 -2.575 1.539 D 73 71 3 74 3 0 9 146 268 -7.342 -2.855 -0.225 IL 74 74 3 74 3 1 14 150 273 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - U - - - ML 75 74 3 77 3 1 14 149 271 -8.525 -0.014 -7.179 -1.676 -0.887 -2.429 1.566 D 76 74 3 77 3 0 9 145 267 -8.288 -3.801 -0.112 IL 77 77 3 77 3 1 13 149 272 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - c - - - ML 78 77 3 80 3 1 13 148 270 -8.525 -0.014 -7.179 -0.663 0.854 -1.765 0.341 D 79 77 3 80 3 0 9 145 267 -8.288 -3.801 -0.112 IL 80 80 3 80 3 1 13 149 271 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - a - - - ML 81 80 3 83 3 1 12 147 269 -8.525 -0.189 -3.054 0.830 -1.192 -1.364 0.481 D 82 80 3 83 3 0 9 145 267 -8.288 -3.801 -0.112 IL 83 83 3 83 3 1 13 148 270 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - U - - - ML 84 83 3 86 3 1 12 146 268 -1.790 -0.508 -7.006 0.002 -1.114 -1.484 1.124 D 85 83 3 86 3 0 9 145 267 -8.729 -0.180 -3.121 IL 86 86 3 86 3 1 11 146 268 -2.344 -0.372 -5.044 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - G - - - ML 87 86 3 89 3 1 12 145 267 -8.840 -0.011 -7.494 -1.194 -3.327 1.731 -2.802 D 88 86 3 89 3 0 5 142 264 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 10 145 268 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 28 - G - - - ML 90 89 3 92 3 1 11 144 266 -8.840 -0.011 -7.494 -1.194 -3.327 1.731 -2.802 D 91 89 3 92 3 0 4 141 263 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 9 144 267 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - U - - - ML 93 92 3 95 3 1 10 143 265 -8.840 -0.011 -7.494 -3.118 -2.856 -3.900 1.880 D 94 92 3 95 3 0 4 140 262 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 8 143 266 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - C - - - ML 96 95 3 98 3 1 10 142 264 -8.840 -0.011 -7.494 -3.722 1.902 -4.452 -2.818 D 97 95 3 98 3 0 3 139 261 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 8 142 265 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 31 - C - - - ML 99 98 3 101 3 1 9 141 263 -8.840 -0.011 -7.494 -3.722 1.902 -4.452 -2.818 D 100 98 3 101 3 0 3 138 260 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 7 141 264 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 32 - G - - - ML 102 101 3 104 3 1 9 140 262 -8.840 -0.011 -7.494 -3.233 -4.644 1.922 -3.976 D 103 101 3 104 3 0 2 137 259 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 6 140 263 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 33 - U - - - ML 105 104 3 107 3 1 8 139 261 -8.840 -0.011 -7.494 -3.118 -2.856 -3.900 1.880 D 106 104 3 107 3 0 1 136 258 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 6 139 262 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - G - - - ML 108 107 3 110 3 1 7 138 260 -8.840 -0.011 -7.494 -3.233 -4.644 1.922 -3.976 D 109 107 3 110 3 0 1 135 257 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 5 138 261 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 35 - U - - - ML 111 110 3 113 3 1 7 137 259 -8.840 -0.011 -7.494 -3.118 -2.856 -3.900 1.880 D 112 110 3 113 3 0 0 134 256 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 5 137 260 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - U - - - ML 114 113 3 116 3 1 6 136 258 -8.840 -0.011 -7.494 -3.118 -2.856 -3.900 1.880 D 115 113 3 116 3 0 0 133 255 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 4 136 259 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - U - - - ML 117 116 3 119 3 1 5 135 257 -8.840 -0.011 -7.494 -1.156 -1.913 -2.593 1.641 D 118 116 3 119 3 0 0 132 254 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 3 135 258 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - C - - - ML 120 119 3 122 3 1 4 134 256 -8.840 -0.011 -7.494 -0.771 1.516 -2.741 -1.307 D 121 119 3 122 3 0 0 131 253 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 3 134 257 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - U - - - ML 123 122 3 125 3 1 3 133 255 -8.840 -0.011 -7.494 -3.118 -2.856 -3.900 1.880 D 124 122 3 125 3 0 0 130 252 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 2 133 256 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - G - - - ML 126 125 3 128 3 1 2 132 254 -8.840 -0.011 -7.494 -3.233 -4.644 1.922 -3.976 D 127 125 3 128 3 0 0 129 251 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 2 132 255 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - A - - - ML 129 128 3 131 3 1 1 131 253 -1.660 -1.562 -1.536 1.919 -4.072 -3.561 -3.774 D 130 128 3 131 3 0 0 127 249 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 3 134 256 -0.374 -2.172 -7.251 0.000 0.000 0.000 0.000 [ MATL 40 ] 52 - A - - - ML 132 131 3 134 3 1 2 128 250 -8.243 -0.017 -6.897 1.098 -0.643 -1.257 -0.320 D 133 131 3 134 3 0 0 126 248 -8.931 -0.298 -2.436 IL 134 134 3 134 3 1 1 128 250 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 53 - A - - - ML 135 134 3 137 3 1 1 127 249 -8.791 -0.012 -7.445 1.258 -2.345 0.183 -1.855 D 136 134 3 137 3 0 0 125 247 -6.828 -0.832 -1.220 IL 137 137 3 137 3 1 1 127 249 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 54 - a - - - ML 138 137 3 140 3 1 1 126 248 -8.840 -0.011 -7.494 0.626 0.099 -0.807 -0.296 D 139 137 3 140 3 0 0 123 245 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 126 248 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 55 - C - - - ML 141 140 3 143 3 1 1 125 247 -8.840 -0.011 -7.494 -1.892 1.753 -3.412 -1.910 D 142 140 3 143 3 0 0 122 244 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 125 247 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 56 - u - - - ML 144 143 3 146 3 1 1 124 246 -8.840 -0.011 -7.494 -0.011 -0.003 -0.613 0.439 D 145 143 3 146 3 0 0 121 243 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 124 246 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 57 - c - - - ML 147 146 3 149 3 1 1 123 245 -8.840 -0.011 -7.494 0.144 0.831 -1.774 -0.279 D 148 146 3 149 3 0 0 120 242 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 123 245 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 58 - a - - - ML 150 149 3 152 3 1 1 122 244 -4.806 -0.061 -7.494 0.808 -0.493 -0.501 -0.265 D 151 149 3 152 3 0 0 119 241 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 122 244 -1.635 -0.670 -4.335 0.000 0.000 0.000 0.000 [ MATL 47 ] 60 - U - - - ML 153 152 3 155 3 1 1 121 243 -8.840 -0.011 -7.494 -0.800 -0.521 -2.007 1.310 D 154 152 3 155 3 0 0 118 240 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 121 243 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 61 - G - - - ML 156 155 3 158 3 1 1 120 242 -8.840 -0.011 -7.494 -1.904 -1.929 1.715 -2.425 D 157 155 3 158 3 0 0 117 239 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 120 242 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 62 - A - - - ML 159 158 3 161 3 1 1 119 241 -8.840 -0.011 -7.494 1.474 -1.242 -1.169 -1.494 D 160 158 3 161 3 0 0 116 239 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 119 241 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 63 - U - - - ML 162 161 3 164 3 1 1 118 240 -8.840 -0.198 -2.990 -0.773 -0.424 -1.974 1.272 D 163 161 3 164 3 0 0 116 238 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 118 241 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 64 - a - - - ML 165 164 3 167 3 1 1 117 239 -8.656 -0.013 -7.310 0.847 -0.293 -0.826 -0.284 D 166 164 3 167 3 0 0 115 237 -7.779 -1.460 -0.662 IL 167 167 3 167 3 1 1 117 240 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 65 - U - - - ML 168 167 3 170 3 1 1 116 238 -8.730 -0.012 -7.384 -0.207 -1.477 -1.908 1.326 D 169 167 3 170 3 0 0 114 236 -7.342 -0.529 -1.734 IL 170 170 3 170 3 1 1 116 239 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 66 - u - - - ML 171 170 3 173 3 1 1 115 237 -8.840 -0.011 -7.494 -0.149 -0.338 -0.061 0.432 D 172 170 3 173 3 0 0 112 234 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 115 238 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 67 - a - - - ML 174 173 3 176 3 1 1 114 236 -8.840 -0.011 -7.494 0.812 -0.836 -0.809 0.155 D 175 173 3 176 3 0 0 111 233 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 114 237 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 68 - g - - - ML 177 176 3 179 3 1 1 113 235 -8.840 -0.011 -7.494 0.056 -0.946 0.622 -0.149 D 178 176 3 179 3 0 0 110 232 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 113 235 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 69 - U - - - ML 180 179 3 182 3 1 1 112 234 -8.840 -0.011 -7.494 -0.332 -0.942 -1.838 1.266 D 181 179 3 182 3 0 0 108 231 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 112 234 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 70 - G - - - ML 183 182 3 185 3 1 1 111 233 -1.937 -0.448 -7.494 -1.499 -3.533 1.780 -2.996 D 184 182 3 185 3 0 0 107 229 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 111 233 -2.515 -0.325 -5.215 0.000 0.000 0.000 0.000 [ MATL 58 ] 72 - G - - - ML 186 185 3 188 3 1 1 110 232 -8.840 -0.011 -7.494 -0.482 -0.534 1.101 -1.158 D 187 185 3 188 3 0 0 104 227 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 110 232 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 73 - A - - - ML 189 188 3 191 3 1 1 109 231 -8.840 -0.011 -7.494 1.919 -4.072 -3.561 -3.774 D 190 188 3 191 3 0 0 101 223 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 109 231 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 74 - A - - - ML 192 191 3 194 3 1 1 108 230 -1.660 -0.561 -7.494 1.746 -2.637 -2.600 -1.648 D 193 191 3 194 3 0 0 86 208 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 114 236 -0.218 -2.879 -7.958 0.000 0.000 0.000 0.000 [ MATL 61 ] 92 - g - - - ML 195 194 3 197 3 1 1 19 38 -8.840 -0.011 -7.494 -0.160 -0.527 0.592 -0.147 D 196 194 3 197 3 0 0 19 38 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 93 - U - - - ML 198 197 3 200 3 1 1 18 37 -8.840 -0.011 -7.494 -0.631 -1.390 -0.667 1.228 D 199 197 3 200 3 0 0 18 36 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 94 - U - - - ML 201 200 3 203 3 1 1 17 35 -8.840 -0.011 -7.494 -1.431 -1.685 -0.842 1.465 D 202 200 3 203 3 0 0 17 35 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 95 - C - - - ML 204 203 3 206 3 1 1 16 34 -8.840 -0.011 -7.494 -2.692 1.727 -3.556 -1.154 D 205 203 3 206 3 0 0 16 34 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 96 - U - - - ML 207 206 3 209 3 1 1 14 33 -8.840 -0.011 -7.494 -3.118 -2.856 -3.900 1.880 D 208 206 3 209 3 0 0 15 33 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 97 - G - - - ML 210 209 3 212 3 1 1 12 31 -8.840 -0.011 -7.494 -3.233 -4.644 1.922 -3.976 D 211 209 3 212 3 0 0 13 32 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 98 - A - - - ML 213 212 3 215 2 1 1 1 1 * 0.000 1.919 -4.072 -3.561 -3.774 D 214 212 3 215 2 0 0 0 0 * 0.000 IL 215 215 3 215 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 68 ] - - - - - - E 216 215 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD18 ACC RF00093 DESC Small nucleolar RNA SNORD18 LENG 71 MAXL 217 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 19:34:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00093/CM NSEQ 16 EFFN 5.636719 CKSUM 2605803411 STATS LOCAL MSV -8.1345 0.71872 STATS LOCAL VITERBI -9.4404 0.71872 STATS LOCAL FORWARD -3.7144 0.71872 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.34331 1.64589 1.45468 1.16250 1.38629 1.38629 1.38629 1.38629 0.08707 4.52729 2.62307 1.46634 0.26236 0.00000 * 1 1.61941 1.57186 1.56261 0.95520 1 u - - < 1.38629 1.38629 1.38629 1.38629 0.02331 4.46353 4.46353 1.46634 0.26236 0.26073 1.47180 2 1.45381 1.50891 1.28140 1.31855 2 g - - < 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 3 1.46144 1.71191 1.22015 1.22966 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 4 1.29487 1.48648 1.58265 1.22258 4 u - - < 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 5 0.93693 1.67286 2.37329 1.11691 5 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 6 0.29483 3.28431 1.77625 3.02412 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 7 3.67358 3.47624 4.21740 0.07370 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 8 3.74175 4.73076 0.04784 4.25592 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 9 0.04897 4.33751 3.97625 4.13727 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 10 3.67358 3.47624 4.21740 0.07370 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 11 3.74175 4.73076 0.04784 4.25592 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 12 0.04897 4.33751 3.97625 4.13727 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 13 1.31719 1.92953 1.19013 1.26332 13 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 14 1.45391 1.05450 2.10498 1.21696 14 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 15 1.45107 2.51820 2.79925 0.47125 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.19380 1.79959 4.52729 0.12597 2.13403 1.09861 0.40547 16 2.01977 0.49588 3.04248 1.55796 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 17 1.15889 0.68124 2.87664 2.08866 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.10221 4.52729 2.44937 1.46634 0.26236 1.09861 0.40547 18 0.18623 2.62878 3.11355 2.93164 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02366 4.44875 4.44875 1.46634 0.26236 2.30137 0.10550 19 1.92812 0.81344 2.75978 1.05572 20 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02366 4.44875 4.44875 1.46634 0.26236 2.30137 0.10550 20 2.73651 1.84471 3.26710 0.30244 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.17837 4.44875 1.88603 1.46634 0.26236 2.30137 0.10550 21 2.63788 2.02760 3.16062 0.28178 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02757 4.29795 4.29795 1.46634 0.26236 3.08917 0.04661 22 1.88088 0.77038 2.67062 1.15360 23 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02757 4.29795 4.29795 1.46634 0.26236 3.08917 0.04661 23 0.79550 2.25724 2.37616 1.04668 24 a - - _ 1.38629 1.38629 1.38629 1.38629 0.15742 4.29795 2.02450 1.46634 0.26236 3.08917 0.04661 24 1.39188 2.20661 2.46524 0.58639 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.40952 1.13753 4.17186 0.09358 2.41533 0.06743 2.73020 25 2.24455 3.78437 0.17590 3.42337 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 26 2.24455 3.78437 0.17590 3.42337 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 27 3.67358 3.47624 4.21740 0.07370 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 28 4.09914 0.05988 4.58509 3.46319 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 29 4.09914 0.05988 4.58509 3.46319 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 30 3.74175 4.73076 0.04784 4.25592 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 31 3.67358 3.47624 4.21740 0.07370 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 32 3.74175 4.73076 0.04784 4.25592 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 33 3.67358 3.47624 4.21740 0.07370 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 34 3.67358 3.47624 4.21740 0.07370 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 35 2.22466 2.79350 3.27731 0.23198 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 36 1.94784 0.31258 3.39809 2.38137 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 37 3.67358 3.47624 4.21740 0.07370 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 38 3.74175 4.73076 0.04784 4.25592 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 39 0.04897 4.33751 3.97625 4.13727 41 A - - _ 1.38629 1.38629 1.38629 1.38629 1.20165 1.08584 1.01698 1.72778 0.19562 1.09861 0.40547 40 0.60577 1.84218 2.30027 1.63148 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03387 4.09516 4.09516 1.46634 0.26236 0.15967 1.91344 41 0.49863 3.11760 1.24838 2.79024 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02266 4.49172 4.49172 1.46634 0.26236 0.38697 1.13666 42 0.94501 1.30526 1.95863 1.61360 54 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 43 2.75475 0.15591 3.86250 2.81809 55 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 44 1.40050 1.38174 1.81442 1.08041 56 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 45 1.28913 0.78790 2.67823 1.60442 57 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 46 0.81601 1.72927 1.73789 1.58718 58 a - - _ 1.38629 1.38629 1.38629 1.38629 0.05798 3.08967 4.52729 0.42189 1.06655 1.09861 0.40547 47 1.97474 1.75843 2.84605 0.46075 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 48 2.79725 2.74032 0.18357 3.16589 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 49 0.34760 2.26706 2.22436 2.50265 62 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 50 1.95552 1.68731 2.82124 0.48783 63 U - - _ 1.38629 1.38629 1.38629 1.38629 0.15736 4.52729 2.00403 1.46634 0.26236 1.09861 0.40547 51 0.78734 1.58571 1.97447 1.60292 64 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02499 4.39493 4.39493 1.46634 0.26236 0.97067 0.47615 52 1.54069 2.47852 2.78254 0.44626 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02366 4.44875 4.44875 1.46634 0.26236 0.22345 1.60822 53 1.50294 1.62150 1.41948 1.08446 66 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 54 0.81258 1.98403 1.96017 1.28035 67 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 55 1.35478 2.06124 0.93705 1.50094 68 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 56 1.63037 2.06985 2.72131 0.49078 69 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 57 2.46343 3.93057 0.14297 3.55974 70 G - - _ 1.38629 1.38629 1.38629 1.38629 0.34029 1.28148 4.52729 0.07613 2.61310 1.09861 0.40547 58 1.75431 1.75353 0.59841 2.26216 72 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 59 0.04897 4.33751 3.97625 4.13727 73 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 60 0.16366 3.29777 3.28245 2.57086 74 A - - _ 1.38629 1.38629 1.38629 1.38629 0.42837 1.08584 4.52729 2.27191 0.10883 1.09861 0.40547 61 1.51276 1.75419 0.95743 1.50159 92 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 62 1.85696 2.40619 1.85244 0.51610 93 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 63 2.46959 2.63286 1.97667 0.34959 94 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 64 3.36420 0.17581 3.95914 2.22978 95 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 65 3.67358 3.47624 4.21740 0.07370 96 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 66 3.74175 4.73076 0.04784 4.25592 97 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 67 0.04897 4.33751 3.97625 4.13727 98 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 68 1.69842 1.47974 1.39656 1.07329 99 u - - > 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 69 1.57916 1.63382 1.43514 1.02002 100 u - - > 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 70 1.38788 1.58229 1.42243 1.19149 101 u - - > 1.38629 1.38629 1.38629 1.38629 0.02186 4.52729 4.52729 1.46634 0.26236 1.09861 0.40547 71 1.26716 1.66506 1.36131 1.29877 102 a - - > 1.38629 1.38629 1.38629 1.38629 0.01099 4.51642 * 1.46634 0.26236 0.00000 * //