# STOCKHOLM 1.0
#=GF ID SNORA62
#=GF AC RF00091
#=GF DE Small nucleolar RNA SNORA62/SNORA6 family
#=GF AU Daub J; 0000-0001-6022-563X
#=GF GA 80.0
#=GF NC 79.9
#=GF TC 80.0
#=GF PI E2
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; PFOLD; Moxon SJ
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 20.00 -Z 2958934 CM SEQDB
#=GF CL CL00040
#=GF DR snoRNABase; E2;
#=GF DR snoRNABase; ACA6;
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Mus_musculus300694;
#=GF DR snoopy; Homo_sapiens300658;
#=GF RN [1]
#=GF RM 8586453
#=GF RT The gene for human E2 small nucleolar RNA resides in an intron of a
#=GF RT laminin-binding protein gene.
#=GF RA Selvamurugan N, Eliceiri GL
#=GF RL Genomics 1995;30:400-401.
#=GF RN [2]
#=GF RM 9144174
#=GF RT Three small nucleolar RNAs that are involved in ribosomal RNA precursor
#=GF RT processing.
#=GF RA Mishra RK, Eliceiri GL
#=GF RL Proc Natl Acad Sci U S A 1997;94:4972-4977.
#=GF RN [3]
#=GF RM 15199136
#=GF RT Human box H/ACA pseudouridylation guide RNA machinery.
#=GF RA Kiss AM, Jady BE, Bertrand E, Kiss T
#=GF RL Mol Cell Biol 2004;24:5797-5807.
#=GF RN [4]
#=GF RM 11387227
#=GF RT RNomics: an experimental approach that identifies 201 candidates for
#=GF RT novel, small, non-messenger RNAs in mouse.
#=GF RA Huttenhofer A, Kiefmann M, Meier-Ewert S, O'Brien J, Lehrach H,
#=GF RA Bachellerie JP, Brosius J
#=GF RL EMBO J 2001;20:2943-2953.
#=GF RN [5]
#=GF RM 16381836
#=GF RT snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box
#=GF RT snoRNAs.
#=GF RA Lestrade L, Weber MJ
#=GF RL Nucleic Acids Res. 2006;34:D158-D162.
#=GF CC The members of this family belong to the H/ACA class of snoRNAs which are
#=GF CC predicted to guide the sites of modification of uridines to pseudouridines
#=GF CC [3]. This family includes human snoRNAs E2 (SNORA62), ACA6 (SNORA6) and M2
#=GF CC and mouse MBI-136. In humans both E2 and ACA6 are encoded in the introns
#=GF CC on the same host gene (LAMR1)[1,3]. E2 is involved in the processing of
#=GF CC eukaryotic pre-rRNA and has regions of complementarity to 28S rRNA [2].
#=GF CC ACA6 is predicted to guide the pseudouridylation of residue U3616 of 28S
#=GF CC rRNA [5].
#=GF WK Small_nucleolar_RNA_SNORA62
#=GF SQ 18

AF375472.1/1-148       --UGCACACUAUUAAAGCUCAG-GGUGGAG-GCCAGUCU-UGGCUCAUGAACUUCUGAGUGUCGGAAGUGUGCUAUAUCAA------UGGCAGGAU-UUUCGCUAACACCAGUAGAG-CU----UGCCUCUAUGACUGGAGUUUGGUAGUACUCGCUGCCACAUA-
AJ609429.1/1-149       --UGCACACUAUUAAAGCUCAG-GGUGGAG-GCCAGUCU-UGGCUCAUGAACUUCUGAGUGUCGGAAGUGUGCUAUAUCAA------UGGCAGGAU-UUUCGCUAACACCAGUAGAG-CU----UGCCUCUAUGACUGGAGUUUGGUAGUACUCGCUGCCACAUAG
U64700.1/1-155         -UUGCACACAGUUAGAACUUGG-AGCUGAG-GCCUU-UUCA-GCCAAUGAACU-CUGAGUGUAGGAUGUGUGCUACAUUAAC----AUGGCAGACU-UUUCGCUAACGCCACAAGGAGCUUUAGAGCUCCAGUGACUGGAGUUUGAUAGUAAUUCUUGCCACAGCU
L22739.1/569-721       UGUGCACAUUGUUAGAGCUUGG-AGUUGAG-GCUACUGACUGGCCGAUGAACUCGCAAGUGUAGGUAGUGUGCUACAUGAG------GGGCAAG-U-UUUCGCUAACACCACAAGGGUCUC---UGGCCCAAUGAGUGGAGUUUGAUAGUAAUUCUUGCUACAAGU
AC099332.2/52634-52482 UGUGCACAUUGUUAGAGCUUGG-AGUUGAG-GCUACUGACUGGCCGAUGAACUCGCAAGUGUAGGUAGUGUGCUACAUGAG------GGGCAAG-U-UUUCGCUAACACCACAAGGGUCUC---UGGCCCAAUGAGUGGAGUUUGAUAGUAAUUCUUGCUACAAGU
U36484.1/569-721       UGUGCACAUUGUUAGAGCUUGG-AGUUGAG-GCUACUGACUGGCCGAUGAACUCGCAAGUGUAGGUAGUGUGCUACAUGAG------GGGCAAG-U-UUUCGCUAACACCACAAGGGUCUC---UGGCCCAAUGAGUGGAGUUUGAUAGUAAUUCUUGCUACAAGU
AK055991.1/796-948     UGUGCACAUUGUUAGAGCUUGG-AGUUGAG-GCUACUGACUGGCCGAUGAACUCGCAAGUGUAGGUAGUGUGCUACAUGAG------GGGCAAG-U-UUUCGCUAACACCACAAGGGUCUC---UGGCCCAAUGAGUGGAGUUUGAUAGUAAUUCUUGCUACAAGU
U43901.2/6709-6861     UGUGCACAUUGUUAGAGCUUGG-AGUUGAG-GCUACUGACUGGCCGAUGAACUCGCAAGUGUAGGUAGUGUGCUACAUGAG------GGGCAAG-U-UUUCGCUAACACCACAAGGGUCUC---UGGCCCAAUGAGUGGAGUUUGAUAGUAAUUCUUGCUACAAGU
L07383.1/1-153         UGUGCACAUUGUUAGAGCUUGG-AGUUGAG-GCUACUGACUGGCCGAUGAACUCGCAAGUGUAGGUAGUGUGCUACAUGAG------GGGCAAG-U-UUUCGCUAACACCACAAGGGUCUC---UGGCCCAAUGAGUGGAGUUUGAUAGUAAUUCUUGCUACAAGU
AF375473.1/1-156       CACGCACACAGUUGGAACUUGGGAGCUGAGAGCCAACCUGUGGCCAAGGAACU-CUCAGUGUAGGAUGUGUGCUACAGUAAC----AUGGCAGGAC-UUAC-UGACAGCCU-GAGGGCCUUU-GUGGCCCAAUGAAAGGAGUUUGGUAGUCAAUCUUGCCACAGU-
U43901.2/4011-4161     GCUGCACACUAUUAAAGCUCAG-GGUGGAG-GCCAGUCU-UGGCUCAUGAACUUCUGAGUGUCGGAAGUGUGCUAUAUCAA------UGGCAGGAU-UUUCGCUAACACCAGUAGAG-CU----UGCCUCUAUGACUGGAGUUUGGUAGUACUCGCUGCCACAUAG
FJ915979.1/1-150       -CUGCACACUAUUAAAGCUCAG-GGUGGAG-GCCAGUCU-UGGCUCAUGAACUUCUGAGUGUCGGAAGUGUGCUACAUUAA------UGGCAGGAU-UUUCGCUAACACCAGUAGAG-CU----UGCCUCUAUGACUGGAGUUUGGUAGUACUCGCUGCCACAUAC
EU240299.1/1-156       CUUGCACACAGUUGGAACUUGG-AGCUGAG-GCCAUCCUGUGGCCAAGGAACUCUCAAGCGUAGGAUGUGUGCUACAGUAAC----AUGGCAGGAC-UUAC-UGACAGCCU-GAGGGCCUUU-GUGGCCCAAUGAAAGGAGUUUGGUAGUCAAUCUUGCCACAGUU
EU094012.1/1-161       CCCGCACACGGUUAGAGCUUGG-AGCUGAG-GCCGGUCUCCGGCCGAUGAACUACCGAGUGUAGGUCGUGUGCCACAGCGAAG--GACGGCGGGUUUUUUCGCUAACGCCACGAGGCCCUCG-GUGGGCCGACGAGUGGAGUUUGAUAGUGACAUCUGCCACAGGU
EU094008.1/1-155       CCCGCACACUAUUAAAGCUCAG-AGCUGAG-GCCGGUUCCGGGCCUAUGAACUCCUGAGUGUCGGAAGUGUGCCACAGUAAA---GCGGGCAGGAU-UUUCGCUAACACCAGGAGAG-CU----CGCCUCCGUGACUGGGGUUUGAUAGUACUCGCUGCCACACGC
EU240300.1/1-158       -UUGCACACUGUUAAAGCUUGA-UGCUGAG-GUCAGUUCCUGACCAAUGAGCUCUCAAGUGUCGGAAGUGUGCUACAACAAAGCUGUUGGCAGGGU-GCUUGCUAAUGCCAGGAGAGGAGC---UGCCUCUAUGAUUGGAGUUUGAUAGCA-GCCCUGCCACAUGC
AF375474.1/1-156       CUUGCACACUGUUAAAGCUUGA-UGCUGAG-GUCAGUUC-UGACCAAUGAGCUCUCAAGUGUCGGAAGUGUGCUACACAAAGC-UGUUGGCAGGGU-GCUUGCUAAUGCCAGGAGAGGAGC---UGCCUCUAUGAUUGGAGUUUGAUAGCA-GCCCUCCGACAUG-
AF357422.1/1-130       -------------------UGG-AGUUGAG-GUCACACGCUGGUCGAUGAACUCACAAGUGUAGGUAGUGUGCUAAAAGAN------UGGCAAGGU-UUUCGCUAACACCCCAC-----UC---UGGUCCAGUGAGUGGGGUUUGAUAGUAACCUUUGCUACAAAA
#=GC SS_cons           :::<<<<<<<------------.-------.<<<<_____>>>>---------------------->>>>>>>::::::::......:<<<<<---.-----------<<<<--<<<<<__..._>>>>>----->>>>---------------->>>>>::::::
#=GC RF                uuUGCACAcugUUAgAGCUUGG.aGuUGAG.GccagUuucuggCCaAUGAACUcucaAGUGUaGGaagUGUGCUAcAuuAa......ugGCAgGaU.UUUCGCUAAcaCCagaAGgGcCUc...UGgCcCaAUGAcuGGAGUUUGaUAGUAauuccUGCcACAagu
//
