INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD31 ACC RF00089 DESC Small nucleolar RNA SNORD31 STATES 211 NODES 69 CLEN 69 W 88 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 16:52:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00089/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 4.097412 CKSUM 3431122816 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.00 NC 39.90 EFP7GF -11.1732 0.71875 ECMLC 0.66847 -6.18105 2.04964 1600000 294208 0.004079 ECMGC 0.39646 -18.69364 -5.23213 1600000 83149 0.004811 ECMLI 0.65917 -4.20981 3.68141 1600000 217880 0.005508 ECMGI 0.46475 -12.44215 -1.46629 1600000 65677 0.006090 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 88 110 -7.640 -7.847 -0.033 -6.261 IL 1 1 2 1 4 3 32 91 113 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 32 90 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 4 31 88 110 -8.617 -0.013 -7.271 0.552 0.388 -1.439 -0.223 D 4 2 3 5 3 0 27 86 108 -6.174 -1.687 -0.566 IL 5 5 3 5 3 3 31 89 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 3 30 87 109 -8.972 -0.012 -7.290 -0.381 -0.607 -1.660 1.176 D 7 5 3 8 3 0 26 85 108 -5.620 -0.734 -1.403 IL 8 8 3 8 3 2 29 87 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 76 - g - - MR 9 8 3 11 3 3 29 86 108 -8.972 -0.012 -7.290 -0.092 -0.794 0.672 -0.165 D 10 8 3 11 3 0 25 84 106 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 29 86 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 75 - u - - MR 12 11 3 14 5 3 28 85 107 -7.677 -0.026 -7.493 -7.705 -8.597 0.154 -0.800 -0.720 0.770 D 13 11 3 14 5 0 24 83 106 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 27 85 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 74 c g - - MP 15 14 3 19 6 3 27 84 106 -9.412 -9.351 -0.017 -8.128 -8.407 -8.803 -3.171 -3.104 -3.269 1.003 -2.630 -4.098 2.569 -3.174 -3.243 0.780 -3.774 -0.352 1.604 -3.426 0.452 -2.176 ML 16 14 3 19 6 1 25 83 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 24 82 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 21 80 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 26 83 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 26 83 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 73 a u - - MP 21 20 6 25 4 2 25 82 104 -7.640 -7.847 -0.033 -6.261 -3.538 -2.799 -3.611 2.876 -3.818 -4.628 0.418 -3.823 -3.615 1.595 -4.130 0.135 0.983 -3.838 -1.504 -2.539 ML 22 20 6 25 4 1 24 81 104 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 22 81 103 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 21 80 102 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 25 83 105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 24 82 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 5 - c - - - ML 27 26 6 29 3 1 24 79 102 -8.617 -0.013 -7.271 -0.333 0.853 -0.943 -0.185 D 28 26 6 29 3 0 20 78 100 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 24 81 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - c - - - ML 30 29 3 32 3 1 23 78 101 -8.617 -0.145 -3.423 -0.532 0.828 -1.757 0.307 D 31 29 3 32 3 0 20 77 99 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 23 80 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - A - - - ML 33 32 3 35 3 1 22 77 100 -8.486 -0.121 -3.691 1.406 -1.079 -1.650 -0.841 D 34 32 3 35 3 0 19 76 98 -7.351 -1.352 -0.732 IL 35 35 3 35 3 1 23 79 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - G - - - ML 36 35 3 38 3 1 22 77 99 -3.281 -0.168 -7.100 -0.187 -1.224 1.075 -0.768 D 37 35 3 38 3 0 18 75 97 -7.563 -0.441 -1.955 IL 38 38 3 38 3 1 21 77 99 -1.847 -0.558 -4.547 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - U - - - ML 39 38 3 41 3 1 21 75 98 -8.617 -0.013 -7.271 -1.720 -1.750 -2.004 1.655 D 40 38 3 41 3 0 16 74 96 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 20 77 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - G - - - ML 42 41 3 44 3 1 20 74 97 -8.617 -0.013 -7.271 -2.865 -4.240 1.898 -3.601 D 43 41 3 44 3 0 15 73 95 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 19 76 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - A - - - ML 45 44 3 47 3 1 19 73 96 -8.617 -0.048 -5.060 1.756 -2.147 -2.421 -2.250 D 46 44 3 47 3 0 15 71 94 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 19 75 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - U - - - ML 48 47 3 50 3 1 19 72 95 -8.582 -0.013 -7.236 -2.658 -2.461 -3.431 1.835 D 49 47 3 50 3 0 14 70 93 -6.598 -2.111 -0.399 IL 50 50 3 50 3 1 18 74 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - G - - - ML 51 50 3 53 3 1 18 71 94 -8.582 -0.013 -7.236 -2.805 -4.175 1.894 -3.539 D 52 50 3 53 3 0 14 69 92 -6.598 -2.111 -0.399 IL 53 53 3 53 3 1 17 73 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 54 53 3 56 3 1 17 70 93 -8.582 -0.069 -4.502 1.887 -3.602 -3.121 -3.268 D 55 53 3 56 3 0 13 69 91 -6.598 -1.041 -0.990 IL 56 56 3 56 3 1 17 72 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - g - - - ML 57 56 3 59 3 1 16 69 92 -8.563 -0.098 -3.988 0.016 -0.885 0.587 -0.081 D 58 56 3 59 3 0 12 67 90 -6.790 -2.303 -0.343 IL 59 59 3 59 3 1 16 71 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - u - - - ML 60 59 3 62 3 1 16 68 91 -8.479 -0.014 -7.133 -0.162 -0.305 -1.424 0.944 D 61 59 3 62 3 0 12 67 89 -7.388 -0.509 -1.780 IL 62 62 3 62 3 1 15 70 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - U - - - ML 63 62 3 65 3 1 15 67 90 -8.617 -0.013 -7.271 -0.972 -0.674 -1.669 1.350 D 64 62 3 65 3 0 10 66 88 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 14 69 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - u - - - ML 66 65 3 68 3 1 15 66 89 -8.617 -0.013 -7.271 -0.338 0.031 0.097 0.160 D 67 65 3 68 3 0 9 65 87 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 13 68 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - a - - - ML 69 68 3 71 3 1 14 65 88 -8.617 -0.038 -5.433 0.869 -0.680 -0.507 -0.242 D 70 68 3 71 3 0 9 64 86 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 13 67 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - a - - - ML 72 71 3 74 3 1 14 64 87 -8.592 -0.013 -7.246 0.972 -1.211 -0.967 0.131 D 73 71 3 74 3 0 8 63 85 -6.487 -1.168 -0.879 IL 74 74 3 74 3 1 12 66 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - U - - - ML 75 74 3 77 3 1 13 63 86 -3.097 -0.190 -7.271 -0.985 -1.654 -2.286 1.571 D 76 74 3 77 3 0 7 61 83 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 12 64 86 -1.607 -0.654 -4.785 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - A - - - ML 78 77 3 80 3 1 12 62 84 -8.617 -0.013 -7.271 1.782 -2.926 -1.927 -2.592 D 79 77 3 80 3 0 7 60 82 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 11 63 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - C - - - ML 81 80 3 83 3 1 12 61 83 -8.617 -0.013 -7.271 -2.566 1.739 -3.411 -1.327 D 82 80 3 83 3 0 6 59 81 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 10 62 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - C - - - ML 84 83 3 86 3 1 11 60 82 -8.617 -0.013 -7.271 -2.283 1.658 -3.156 -0.923 D 85 83 3 86 3 0 6 58 80 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 10 61 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - G - - - ML 87 86 3 89 3 1 10 59 81 -8.617 -0.013 -7.271 -1.254 -3.157 1.725 -2.614 D 88 86 3 89 3 0 5 57 79 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 9 60 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 90 89 3 92 3 1 10 58 80 -8.617 -0.013 -7.271 -3.281 1.868 -4.063 -2.422 D 91 89 3 92 3 0 4 56 78 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 8 59 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - C - - - ML 93 92 3 95 3 1 9 56 79 -8.617 -0.013 -7.271 -3.281 1.868 -4.063 -2.422 D 94 92 3 95 3 0 4 55 77 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 8 58 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - C - - - ML 96 95 3 98 3 1 8 55 78 -8.617 -0.056 -4.823 -3.281 1.868 -4.063 -2.422 D 97 95 3 98 3 0 3 54 76 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 7 57 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - C - - - ML 99 98 3 101 3 1 8 54 77 -8.574 -0.013 -7.228 -3.191 1.860 -3.982 -2.344 D 100 98 3 101 3 0 3 53 75 -6.679 -0.959 -1.071 IL 101 101 3 101 3 1 6 56 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - A - - - ML 102 101 3 104 3 1 8 53 76 -8.617 -0.013 -7.271 1.757 -2.615 -2.488 -1.843 D 103 101 3 104 3 0 2 52 74 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 6 55 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - G - - - ML 105 104 3 107 3 1 7 52 75 -8.617 -0.013 -7.271 -2.124 -3.227 1.779 -2.107 D 106 104 3 107 3 0 1 51 73 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 5 54 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - U - - - ML 108 107 3 110 3 1 7 51 74 -8.617 -0.013 -7.271 -1.688 -1.731 -1.929 1.644 D 109 107 3 110 3 0 1 50 72 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 5 53 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - - - ML 111 110 3 113 3 1 6 50 73 -8.617 -0.013 -7.271 -3.281 1.868 -4.063 -2.422 D 112 110 3 113 3 0 0 49 71 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 4 52 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - - - ML 114 113 3 116 3 1 6 49 72 -8.617 -0.013 -7.271 -2.721 -2.515 -3.495 1.842 D 115 113 3 116 3 0 0 48 70 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 4 51 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - - - ML 117 116 3 119 3 1 5 48 71 -8.617 -0.013 -7.271 -2.865 -4.240 1.898 -3.601 D 118 116 3 119 3 0 0 47 69 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 3 50 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - A - - - ML 120 119 3 122 3 1 4 47 70 -8.617 -0.013 -7.271 1.892 -3.666 -3.181 -3.339 D 121 119 3 122 3 0 0 46 68 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 3 49 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - U - - - ML 123 122 3 125 3 1 3 46 69 -8.617 -0.013 -7.271 -0.634 -1.346 -1.316 1.356 D 124 122 3 125 3 0 0 45 68 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 2 48 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - c - - - ML 126 125 3 128 3 1 2 45 68 -8.617 -0.013 -7.271 0.044 0.380 -1.427 0.373 D 127 125 3 128 3 0 0 45 67 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 2 47 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - a - - - ML 129 128 3 131 3 1 1 44 67 -8.617 -0.247 -2.693 0.927 -0.973 -0.615 -0.095 D 130 128 3 131 3 0 0 45 67 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 46 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - c - - - ML 132 131 3 134 3 1 2 42 64 -5.456 -0.045 -7.039 -0.112 0.890 -1.573 -0.175 D 133 131 3 134 3 0 0 45 68 -0.541 -3.344 -2.223 IL 134 134 3 134 3 1 1 46 68 -1.184 -0.905 -5.282 0.000 0.000 0.000 0.000 [ MATL 43 ] 46 - U - - - ML 135 134 3 137 3 1 2 40 59 -8.617 -0.013 -7.271 -1.022 -0.649 -1.141 1.273 D 136 134 3 137 3 0 0 38 58 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - G - - - ML 138 137 3 140 3 1 1 39 58 -8.617 -0.013 -7.271 -0.149 -1.492 1.228 -1.319 D 139 137 3 140 3 0 0 37 57 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - U - - - ML 141 140 3 143 3 1 1 37 56 -8.617 -0.013 -7.271 -2.721 -2.515 -3.495 1.842 D 142 140 3 143 3 0 0 36 55 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - G - - - ML 144 143 3 146 3 1 1 36 55 -8.617 -0.013 -7.271 -2.865 -4.240 1.898 -3.601 D 145 143 3 146 3 0 0 35 54 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 50 - A - - - ML 147 146 3 149 3 1 1 35 54 -8.617 -0.013 -7.271 1.515 -1.283 -1.463 -1.441 D 148 146 3 149 3 0 0 34 53 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - C - - - ML 150 149 3 152 3 1 1 34 53 -8.617 -0.053 -4.906 -1.307 1.477 -1.607 -1.050 D 151 149 3 152 3 0 0 33 52 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 52 - U - - - ML 153 152 3 155 3 1 1 33 52 -8.577 -0.013 -7.231 -1.125 -1.670 -2.332 1.599 D 154 152 3 155 3 0 0 32 51 -6.650 -0.988 -1.042 IL 155 155 3 155 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - G - - - ML 156 155 3 158 3 1 1 32 51 -8.617 -0.013 -7.271 -2.865 -4.240 1.898 -3.601 D 157 155 3 158 3 0 0 31 50 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - A - - - ML 159 158 3 161 3 1 1 31 50 -8.617 -0.013 -7.271 1.892 -3.666 -3.181 -3.339 D 160 158 3 161 3 0 0 30 49 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - a - - - ML 162 161 3 164 3 1 1 30 49 -8.617 -0.013 -7.271 0.949 -1.288 -1.443 0.371 D 163 161 3 164 3 0 0 29 48 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - A - - - ML 165 164 3 167 3 1 1 29 48 -4.647 -0.069 -7.271 1.009 -1.245 -1.103 0.137 D 166 164 3 167 3 0 0 27 46 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 30 49 -1.626 -0.675 -4.326 0.000 0.000 0.000 0.000 [ MATL 54 ] 58 - G - - - ML 168 167 3 170 3 1 1 28 46 -8.617 -0.013 -7.271 -1.046 -1.716 1.544 -1.764 D 169 167 3 170 3 0 0 27 46 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - G - - - ML 171 170 3 173 3 1 1 26 45 -8.617 -0.013 -7.271 -1.193 -3.115 1.713 -2.573 D 172 170 3 173 3 0 0 26 44 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 60 - U - - - ML 174 173 3 176 3 1 1 25 44 -8.617 -0.013 -7.271 -1.572 -1.666 -1.658 1.600 D 175 173 3 176 3 0 0 24 43 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 61 - A - - - ML 177 176 3 179 3 1 1 24 43 -8.617 -0.158 -3.303 1.511 -1.870 -1.913 -0.713 D 178 176 3 179 3 0 0 23 42 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 62 - U - - - ML 180 179 3 182 3 1 1 23 42 -4.425 -0.328 -2.673 -0.892 -0.770 -1.893 1.382 D 181 179 3 182 3 0 0 22 40 -7.424 -0.494 -1.816 IL 182 182 3 182 3 1 1 25 43 -1.636 -0.669 -4.337 0.000 0.000 0.000 0.000 [ MATL 59 ] 64 - u - - - ML 183 182 3 185 3 1 1 22 40 -8.407 -0.015 -7.061 -0.147 -0.195 -1.012 0.789 D 184 182 3 185 3 0 0 21 39 -7.744 -0.381 -2.135 IL 185 185 3 185 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 65 - U - - - ML 186 185 3 188 3 1 1 21 39 -8.617 -0.013 -7.271 -1.477 -0.146 -2.260 1.338 D 187 185 3 188 3 0 0 20 39 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - U - - - ML 189 188 3 191 3 1 1 19 38 -8.617 -0.013 -7.271 -1.075 -1.264 -2.187 1.531 D 190 188 3 191 3 0 0 19 38 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - C - - - ML 192 191 3 194 3 1 1 18 37 -8.617 -0.013 -7.271 -3.281 1.868 -4.063 -2.422 D 193 191 3 194 3 0 0 18 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 68 - U - - - ML 195 194 3 197 3 1 1 17 36 -8.617 -0.013 -7.271 -2.721 -2.515 -3.495 1.842 D 196 194 3 197 3 0 0 17 35 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 69 - G - - - ML 198 197 3 200 3 1 1 16 34 -8.617 -0.013 -7.271 -2.865 -4.240 1.898 -3.601 D 199 197 3 200 3 0 0 16 34 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 70 - A - - - ML 201 200 3 203 3 1 1 14 33 -8.617 -0.185 -3.083 1.892 -3.666 -3.181 -3.339 D 202 200 3 203 3 0 0 14 33 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 71 - g - - - ML 204 203 3 206 3 1 1 13 31 -8.446 -0.067 -4.547 -0.120 -1.075 0.737 -0.092 D 205 203 3 206 3 0 0 12 31 -7.564 -1.899 -0.461 IL 206 206 3 206 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 72 - C - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 -0.641 1.022 -1.792 0.056 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 68 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD31 ACC RF00089 DESC Small nucleolar RNA SNORD31 LENG 69 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 16:52:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00089/CM NSEQ 26 EFFN 4.452881 CKSUM 3431122816 STATS LOCAL MSV -8.1870 0.71875 STATS LOCAL VITERBI -9.1462 0.71875 STATS LOCAL FORWARD -3.9937 0.71875 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36205 1.48560 1.47692 1.24078 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 0.00000 * 1 0.99719 1.10223 2.42249 1.55943 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 2 1.66521 1.82000 2.57955 0.55684 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 3 1.92511 0.92780 1.80562 1.22300 3 c - - < 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 4 0.70302 2.42575 1.35207 1.84646 4 a - - < 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 5 1.63460 0.77569 2.05228 1.53182 5 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 6 1.77808 0.79318 2.65330 1.17696 6 c - - _ 1.38629 1.38629 1.38629 1.38629 0.12410 4.40227 2.25899 1.46634 0.26236 1.09861 0.40547 7 0.39514 2.15259 2.58303 2.00481 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.10780 4.30553 2.42249 1.46634 0.26236 0.86457 0.54686 8 1.53507 2.25925 0.61924 1.95348 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.14490 2.11198 4.27625 0.21570 1.63979 0.17185 1.84581 9 2.65329 2.66277 2.81861 0.22297 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 10 3.47025 4.43313 0.06359 3.98336 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 11 0.15788 2.91351 3.13949 3.02714 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05075 4.40227 3.29054 1.46634 0.26236 1.09861 0.40547 12 3.33326 3.18150 3.87110 0.10318 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37697 4.37697 1.46634 0.26236 1.61733 0.22118 13 3.42923 4.38826 0.06641 3.94147 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37697 4.37697 1.46634 0.26236 1.61733 0.22118 14 0.07001 3.98973 3.64917 3.76787 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06727 4.37697 2.94711 1.46634 0.26236 0.50560 0.92418 15 1.38339 2.01519 0.96320 1.45113 16 g - - _ 1.38629 1.38629 1.38629 1.38629 0.08932 4.36256 2.62143 1.46634 0.26236 1.82102 0.17657 16 1.50650 1.60035 2.40471 0.72114 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02749 4.30074 4.30074 1.46634 0.26236 0.20308 1.69396 17 2.10085 1.86927 2.58197 0.43419 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 18 1.64001 1.35562 1.30809 1.28050 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 19 0.77415 1.86435 1.74281 1.56600 20 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04313 4.40227 3.50789 1.46634 0.26236 1.09861 0.40547 20 0.70016 2.25814 2.07562 1.29656 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02526 4.38440 4.38440 1.46634 0.26236 0.59758 0.79882 21 2.10246 2.59510 3.04307 0.28035 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.15777 2.01215 4.40227 0.41663 1.07665 1.09861 0.40547 22 0.14074 3.49512 2.76172 3.27658 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 23 3.26375 0.16747 3.84560 2.35828 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 24 3.05927 0.22255 3.66499 2.06360 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 25 2.29097 3.65290 0.17999 3.27979 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 26 3.77960 0.08151 4.30913 3.17020 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 27 3.77960 0.08151 4.30913 3.17020 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 28 3.77960 0.08151 4.30913 3.17020 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05675 4.40227 3.14836 1.46634 0.26236 1.09861 0.40547 29 3.71856 0.08642 4.25484 3.11619 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02560 4.37112 4.37112 1.46634 0.26236 0.45157 1.01233 30 0.15715 3.27032 3.18875 2.71494 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 31 2.93857 3.70743 0.14286 2.88880 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 32 2.63129 2.64986 2.76418 0.23026 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 33 3.77960 0.08151 4.30913 3.17020 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 34 3.37714 3.21906 3.91581 0.09878 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 35 3.47025 4.43313 0.06359 3.98336 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 36 0.06684 4.03455 3.69095 3.81624 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 37 1.85156 2.36751 2.32445 0.42854 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 38 1.35964 1.10860 2.40952 1.12897 41 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 39 0.73273 2.07952 1.82062 1.45892 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 40 1.47450 0.74820 2.52142 1.52535 43 c - - _ 1.38629 1.38629 1.38629 1.38629 0.22298 1.67333 4.40227 0.20876 1.66916 1.09861 0.40547 41 2.14386 1.85112 2.19379 0.48736 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 42 1.50440 2.44778 0.51628 2.35783 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 43 3.37714 3.21906 3.91581 0.09878 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 44 3.47025 4.43313 0.06359 3.98336 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 45 0.32126 2.29331 2.43788 2.44777 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 46 2.35420 0.33933 2.53207 2.17779 51 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05453 4.40227 3.19849 1.46634 0.26236 1.09861 0.40547 47 2.20563 2.60629 3.07571 0.26155 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02554 4.37328 4.37328 1.46634 0.26236 0.47007 0.98071 48 3.47025 4.43313 0.06359 3.98336 53 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 49 0.06684 4.03455 3.69095 3.81624 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 50 0.71483 2.32037 2.42760 1.12627 55 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 51 0.67340 2.28409 2.17479 1.29270 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06635 2.95752 4.40227 0.41919 1.07172 1.09861 0.40547 52 2.15326 2.59672 0.30073 2.67222 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 53 2.24713 3.62282 0.18771 3.25110 59 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 54 2.54986 2.60432 2.56696 0.25983 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 55 0.32363 2.73836 2.77420 1.90109 61 A - - _ 1.38629 1.38629 1.38629 1.38629 0.13388 4.40227 2.17990 1.46634 0.26236 1.09861 0.40547 56 2.04258 1.94099 2.75387 0.41089 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.26665 2.80660 1.75070 0.40261 1.10435 0.19614 1.72537 57 1.49551 1.52015 2.10082 0.83280 64 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02903 4.24691 4.24691 1.46634 0.26236 0.14574 1.99792 58 2.48001 1.48754 3.02495 0.44353 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 59 2.17154 2.30270 2.96773 0.30844 66 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 60 3.77960 0.08151 4.30913 3.17020 67 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 61 3.37714 3.21906 3.91581 0.09878 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 62 3.47025 4.43313 0.06359 3.98336 69 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 63 0.06684 4.03455 3.69095 3.81624 70 A - - _ 1.38629 1.38629 1.38629 1.38629 0.15434 4.40227 2.03430 1.46634 0.26236 1.09861 0.40547 64 1.48329 2.15552 0.85589 1.45947 71 g - - _ 1.38629 1.38629 1.38629 1.38629 0.06806 4.27612 2.95845 1.46634 0.26236 1.33311 0.30606 65 1.85857 0.65726 2.67999 1.35762 72 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02834 4.27065 4.27065 1.46634 0.26236 0.16610 1.87705 66 1.98358 1.62427 2.24135 0.58151 73 U - - > 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 67 1.54851 2.11664 0.74962 1.63755 74 g - - > 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 68 1.27907 1.95871 1.89073 0.84466 75 u - - : 1.38629 1.38629 1.38629 1.38629 0.02480 4.40227 4.40227 1.46634 0.26236 1.09861 0.40547 69 1.46226 1.94793 0.90285 1.51273 76 g - - : 1.38629 1.38629 1.38629 1.38629 0.01248 4.38995 * 1.46634 0.26236 0.00000 * //