INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD30 ACC RF00088 DESC Small nucleolar RNA SNORD30 STATES 214 NODES 63 CLEN 70 W 91 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 05:51:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/work/1a/1e575e5c861d7cdd3d7faed2c53a9b/RF00088/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 2.924805 CKSUM 4134026120 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.00 NC 39.90 EFP7GF -9.3351 0.71894 ECMLC 0.46616 -10.85717 2.54644 1600000 620537 0.001934 ECMGC 0.38299 -14.86367 -0.73799 1600000 89450 0.004472 ECMLI 0.47361 -6.55700 4.78286 1600000 258008 0.004651 ECMGI 0.40874 -9.77954 2.57472 1600000 62386 0.006412 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 91 118 -7.307 -7.514 -0.041 -5.928 IL 1 1 2 1 4 1 28 94 121 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 28 93 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 28 91 118 -8.301 -0.016 -6.955 0.800 -0.433 -0.583 -0.233 D 4 2 3 5 3 0 22 89 116 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 27 92 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 27 90 117 -8.301 -0.016 -6.955 -0.704 -0.529 -0.894 1.108 D 7 5 3 8 3 0 21 88 115 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 26 91 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 1 26 89 116 -8.301 -0.016 -6.955 0.693 -0.813 -0.357 0.048 D 10 8 3 11 3 0 20 87 114 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 25 90 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 25 88 115 -8.301 -0.016 -6.955 -0.370 -0.162 -1.428 0.971 D 13 11 3 14 3 0 20 86 113 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 24 89 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 1 24 87 114 -8.301 -0.016 -6.955 0.905 -0.989 0.017 -0.709 D 16 14 3 17 3 0 19 85 112 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 23 88 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 23 86 113 -8.301 -0.016 -6.955 -2.125 -2.013 -2.884 1.760 D 19 17 3 20 3 0 18 84 111 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 23 87 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 23 85 112 -8.301 -0.016 -6.955 -2.278 -3.593 1.842 -2.977 D 22 20 3 23 3 0 17 83 110 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 22 86 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 22 84 111 -8.301 -0.016 -6.955 1.831 -3.052 -2.618 -2.665 D 25 23 3 26 3 0 17 82 109 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 21 85 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 21 83 110 -8.301 -0.016 -6.955 -2.125 -2.013 -2.884 1.760 D 28 26 3 29 3 0 16 81 108 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 20 84 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 20 82 109 -8.301 -0.016 -6.955 -2.278 -3.593 1.842 -2.977 D 31 29 3 32 3 0 15 80 107 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 19 83 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 19 81 108 -8.301 -0.016 -6.955 1.831 -3.052 -2.618 -2.665 D 34 32 3 35 3 0 14 79 106 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 19 82 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - c - - - ML 36 35 3 38 3 1 18 80 107 -8.301 -0.016 -6.955 -0.099 0.739 -1.434 0.039 D 37 35 3 38 3 0 14 78 105 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 18 81 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 17 79 106 -8.301 -0.016 -6.955 -2.125 -2.013 -2.884 1.760 D 40 38 3 41 3 0 13 77 104 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 17 80 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 17 78 105 -8.301 -0.050 -5.007 -1.304 -1.399 -1.719 1.542 D 43 41 3 44 3 0 12 76 102 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 16 79 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - a - - - ML 45 44 3 47 3 1 16 77 104 -2.652 -0.264 -6.921 0.784 -0.799 -1.151 0.325 D 46 44 3 47 3 0 11 72 99 -6.518 -2.031 -0.426 IL 47 47 3 47 3 1 16 79 105 -0.999 -1.079 -5.252 0.000 0.000 0.000 0.000 [ MATL 16 ] 21 - C - - - ML 48 47 3 50 3 1 15 70 89 -8.267 -0.092 -4.099 -0.569 1.067 -1.712 -0.112 D 49 47 3 50 3 0 11 69 88 -6.518 -1.131 -0.909 IL 50 50 3 50 3 1 15 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 22 - A - - - ML 51 50 3 53 3 1 15 69 88 -8.228 -0.017 -6.882 1.008 -1.095 -0.903 -0.020 D 52 50 3 53 3 0 10 67 87 -6.826 -1.429 -0.690 IL 53 53 3 53 3 1 14 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 23 - U - - - ML 54 53 3 56 3 1 14 68 87 -8.263 -0.017 -6.917 -2.053 -1.953 -2.810 1.748 D 55 53 3 56 3 0 9 67 86 -6.551 -1.092 -0.943 IL 56 56 3 56 3 1 13 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 24 - G - - - ML 57 56 3 59 3 1 13 67 86 -8.301 -0.016 -6.955 -1.138 -2.401 1.598 -1.600 D 58 56 3 59 3 0 7 65 85 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 12 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 25 - G - - - ML 60 59 3 62 3 1 12 66 85 -8.301 -0.016 -6.955 -1.236 -2.854 1.692 -2.283 D 61 59 3 62 3 0 7 64 84 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 11 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 26 - A - - - ML 63 62 3 65 3 1 11 65 84 -8.301 -0.016 -6.955 1.831 -3.052 -2.618 -2.665 D 64 62 3 65 3 0 6 63 83 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 11 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 27 - A - - - ML 66 65 3 68 3 1 11 64 83 -8.671 -0.015 -6.989 1.614 -1.597 -1.870 -1.574 D 67 65 3 68 3 0 5 62 81 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 9 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 76 - u - - MR 69 68 3 71 3 1 10 63 82 -8.671 -0.015 -6.989 -0.324 0.345 -1.149 0.566 D 70 68 3 71 3 0 4 61 80 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 8 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 75 - U - - MR 72 71 3 74 3 1 9 62 81 -8.671 -0.015 -6.989 -1.200 -0.355 -1.960 1.337 D 73 71 3 74 3 0 3 60 79 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 8 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 74 - U - - MR 75 74 3 77 3 1 8 61 80 -8.671 -0.015 -6.989 -0.799 -0.793 -0.949 1.220 D 76 74 3 77 3 0 2 59 78 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 7 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 73 - U - - MR 78 77 3 80 3 1 8 60 79 -8.671 -0.015 -6.989 -0.967 -0.992 -1.214 1.353 D 79 77 3 80 3 0 2 58 77 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 6 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 72 - U - - MR 81 80 3 83 3 1 7 59 78 -8.671 -0.015 -6.989 -0.804 -0.437 -1.193 1.171 D 82 80 3 83 3 0 2 57 76 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 5 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 71 - A - - MR 84 83 3 86 3 1 6 58 77 -8.671 -0.015 -6.989 1.831 -3.052 -2.618 -2.665 D 85 83 3 86 3 0 1 56 75 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 5 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 70 - G - - MR 87 86 3 89 3 1 6 57 76 -8.671 -0.015 -6.989 -2.278 -3.593 1.842 -2.977 D 88 86 3 89 3 0 1 55 74 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 4 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 69 - U - - MR 90 89 3 92 3 1 5 56 75 -8.671 -0.015 -6.989 -2.125 -2.013 -2.884 1.760 D 91 89 3 92 3 0 0 54 73 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 4 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 68 - C - - MR 93 92 3 95 3 1 5 55 74 -8.671 -0.015 -6.989 -2.565 1.787 -3.391 -1.818 D 94 92 3 95 3 0 0 53 72 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 3 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 67 - U - - MR 96 95 3 98 3 1 4 54 73 -8.671 -0.015 -6.989 -0.805 -1.334 -1.916 1.468 D 97 95 3 98 3 0 0 52 71 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 3 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 66 - A - - MR 99 98 3 101 3 1 4 53 71 -8.671 -0.015 -6.989 1.431 -1.606 -1.614 -0.626 D 100 98 3 101 3 0 0 51 70 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 3 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 65 - A - - MR 102 101 3 104 3 1 3 51 70 -8.671 -0.015 -6.989 1.596 -1.962 -1.879 -1.160 D 103 101 3 104 3 0 0 50 69 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 2 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 64 - A - - MR 105 104 3 107 3 1 2 50 69 -8.671 -0.015 -6.989 1.596 -1.962 -1.879 -1.160 D 106 104 3 107 3 0 0 49 68 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 2 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 63 - G - - MR 108 107 3 110 3 1 1 49 68 -8.671 -0.080 -4.285 -0.116 -1.232 1.101 -0.981 D 109 107 3 110 3 0 0 48 67 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 62 - G - - MR 111 110 3 113 3 1 1 49 68 -8.607 -0.089 -4.133 -0.816 -1.604 1.208 -0.335 D 112 110 3 113 3 0 0 47 66 -6.927 -2.104 -0.397 IR 113 113 3 113 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 61 - u - - MR 114 113 3 116 3 1 2 48 67 -8.535 -0.016 -6.853 -0.499 0.373 -1.416 0.699 D 115 113 3 116 3 0 0 46 65 -7.342 -0.605 -1.572 IR 116 116 3 116 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 60 - U - - MR 117 116 3 119 3 1 1 47 66 -8.671 -0.015 -6.989 -0.691 -1.156 -1.233 1.326 D 118 116 3 119 3 0 0 45 64 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 59 - C - - MR 120 119 3 122 5 1 1 46 65 -7.391 -0.032 -7.206 -7.419 -8.310 -0.551 1.125 -1.772 -0.244 D 121 119 3 122 5 0 0 44 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 28 58 U A - - MP 123 122 3 127 6 2 2 45 64 -9.255 -9.195 -0.019 -7.971 -8.251 -8.646 -3.731 -3.739 -3.798 -0.320 -3.242 -4.545 0.844 -3.790 -3.826 -0.112 -4.324 -1.936 3.414 -1.454 -1.047 -2.751 ML 124 122 3 127 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 29 57 C G - - MP 129 128 6 133 6 2 2 43 62 -9.255 -9.195 -0.019 -7.971 -8.251 -8.646 -3.373 -3.431 -3.396 0.077 -0.984 -4.092 3.157 -0.730 -3.418 0.173 -3.882 -1.623 0.965 -3.608 -0.439 -2.399 ML 130 128 6 133 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 30 56 U A - - MP 135 134 6 139 6 2 2 41 60 -9.255 -9.195 -0.059 -5.022 -8.251 -8.646 -5.048 -4.885 -4.786 -1.130 -3.563 -5.268 0.775 -4.311 -4.784 -0.977 -5.114 -2.758 3.621 -5.158 -1.219 -3.502 ML 136 134 6 139 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 31 55 C G - - MP 141 140 6 145 6 2 2 39 58 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -5.106 -5.059 -4.698 -1.249 -3.306 -5.036 3.692 -4.171 -4.772 -1.075 -4.967 -3.018 0.145 -5.136 -1.031 -3.594 ML 142 140 6 145 6 1 1 38 57 -6.730 -7.076 -0.806 -1.485 -6.926 -4.455 -0.086 0.506 -0.790 0.083 MR 143 140 6 145 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 32 54 G U - - MP 147 146 6 151 4 2 2 37 55 -7.307 -7.514 -0.041 -5.928 -3.896 -2.631 -4.083 1.935 -5.220 -5.772 -0.794 -4.156 -3.732 0.978 -4.283 3.050 -1.007 -4.810 -2.707 -2.766 ML 148 146 6 151 4 1 1 37 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 37 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 36 55 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 39 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 33 - U - - - ML 153 152 6 155 3 1 1 34 53 -8.301 -0.016 -6.955 -2.125 -2.013 -2.884 1.760 D 154 152 6 155 3 0 0 33 52 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 34 - U - - - ML 156 155 3 158 3 1 1 33 52 -8.671 -0.051 -4.961 -2.125 -2.013 -2.884 1.760 D 157 155 3 158 3 0 0 32 50 -5.620 -0.734 -1.403 IL 158 158 3 158 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 53 - U - - MR 159 158 3 161 5 1 1 32 51 -7.358 -0.032 -7.173 -7.385 -8.277 -0.210 -0.543 -1.382 1.046 D 160 158 3 161 5 0 0 31 49 -5.542 -0.598 -3.169 -4.600 -2.594 IR 161 161 3 161 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 35 52 C G - - MP 162 161 3 166 6 2 2 31 50 -9.255 -9.195 -0.019 -7.971 -8.251 -8.646 -4.693 -4.674 -4.349 -0.837 -2.986 -4.733 3.521 -3.810 -4.390 -0.652 -4.653 -2.646 0.955 -4.728 -0.667 -3.210 ML 163 161 3 166 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 3 166 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 3 166 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 36 51 G U - - MP 168 167 6 172 6 2 2 29 48 -9.255 -9.195 -0.019 -7.971 -8.251 -8.646 -3.937 -2.634 -4.138 1.626 -5.347 -5.886 -0.887 -4.185 -3.749 0.913 -4.299 3.202 -1.105 -4.925 -2.807 -2.797 ML 169 167 6 172 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 6 172 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 37 50 G C - - MP 174 173 6 178 6 2 2 27 46 -9.255 -9.195 -0.053 -5.209 -8.251 -8.646 -4.072 -2.839 -4.069 0.564 -4.581 -4.362 -0.132 -4.533 -4.061 3.403 -4.397 -0.600 -0.430 -0.371 -2.072 -3.073 ML 175 173 6 178 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 6 178 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 178 178 5 178 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 38 49 C G - - MP 180 179 6 184 4 2 2 25 44 -7.230 -4.919 -0.085 -5.851 -5.133 -5.088 -4.721 -1.277 -3.323 -5.055 3.697 -4.191 -4.795 -1.106 -4.987 -3.049 0.124 -5.162 -1.050 -3.618 ML 181 179 6 184 4 1 1 25 44 -4.083 -4.266 -0.389 -2.995 -0.042 0.439 -0.741 0.104 MR 182 179 6 184 4 1 1 25 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 183 179 6 184 4 0 0 24 42 -4.568 -4.250 -2.265 -0.520 IL 184 184 5 184 4 1 1 27 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 185 185 6 185 3 1 1 25 44 -1.541 -0.728 -4.242 0.000 0.000 0.000 0.000 [ MATL 53 ] 39 - U - - - ML 186 185 6 188 3 1 1 22 41 -8.301 -0.016 -6.955 -2.125 -2.013 -2.884 1.760 D 187 185 6 188 3 0 0 21 40 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 40 - G - - - ML 189 188 3 191 3 1 1 21 40 -8.301 -0.016 -6.955 -1.223 -2.845 1.690 -2.274 D 190 188 3 191 3 0 0 20 39 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 41 - A - - - ML 192 191 3 194 3 1 1 20 38 -8.301 -0.016 -6.955 1.831 -3.052 -2.618 -2.665 D 193 191 3 194 3 0 0 19 38 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 42 - u - - - ML 195 194 3 197 3 1 1 18 37 -8.301 -0.016 -6.955 0.199 -1.038 -1.353 0.980 D 196 194 3 197 3 0 0 18 37 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 43 - g - - - ML 198 197 3 200 3 1 1 17 36 -8.301 -0.016 -6.955 -0.090 -0.825 0.361 0.276 D 199 197 3 200 3 0 0 17 35 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 44 - a - - - ML 201 200 3 203 3 1 1 16 34 -8.301 -0.213 -2.902 0.643 -0.824 -0.393 0.153 D 202 200 3 203 3 0 0 16 34 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 45 - c - - - ML 204 203 3 206 3 1 1 15 33 -8.107 -0.019 -6.761 -0.409 0.866 -1.471 0.089 D 205 203 3 206 3 0 0 14 32 -7.477 -0.473 -1.869 IL 206 206 3 206 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 46 - U - - - ML 207 206 3 209 3 1 1 13 31 -8.301 -0.016 -6.955 -1.305 -0.611 -2.058 1.433 D 208 206 3 209 3 0 0 13 32 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 47 - U - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 -1.501 -1.028 -2.247 1.559 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD30 ACC RF00088 DESC Small nucleolar RNA SNORD30 LENG 70 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 05:51:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/work/1a/1e575e5c861d7cdd3d7faed2c53a9b/RF00088/CM NSEQ 20 EFFN 3.413086 CKSUM 4134026120 STATS LOCAL MSV -8.5113 0.71894 STATS LOCAL VITERBI -9.1909 0.71894 STATS LOCAL FORWARD -3.9493 0.71894 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.38123 1.71817 1.47309 1.07845 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 0.00000 * 1 0.81352 1.68700 1.80493 1.57433 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 2 1.94064 1.77404 2.02742 0.58867 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 3 0.89202 1.97563 1.63620 1.35953 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 4 1.67361 1.49485 2.43890 0.69137 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 5 0.73694 2.10281 1.36181 1.94411 5 a - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 6 3.04486 2.93709 3.57631 0.13766 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 7 3.15225 4.08418 0.08941 3.65208 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 8 0.09534 3.69421 3.37639 3.44519 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 9 3.04486 2.93709 3.57631 0.13766 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 10 3.15225 4.08418 0.08941 3.65208 10 G - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 11 0.09534 3.69421 3.37639 3.44519 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 12 1.47425 0.83625 2.45258 1.37973 12 c - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 13 3.04486 2.93709 3.57631 0.13766 13 U - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 14 2.41510 2.46205 2.66412 0.28008 14 U - - : 1.38629 1.38629 1.38629 1.38629 0.05748 4.16712 3.20989 1.46634 0.26236 1.09861 0.40547 15 0.82070 1.97307 2.23276 1.15958 15 a - - : 1.38629 1.38629 1.38629 1.38629 0.22347 1.69082 4.14194 0.98859 0.46538 1.52703 0.24485 16 1.83186 0.60496 2.66798 1.49435 21 C - - : 1.38629 1.38629 1.38629 1.38629 0.08988 4.14194 2.65829 1.46634 0.26236 0.56980 0.83388 17 0.66253 2.19607 2.04686 1.41028 22 A - - : 1.38629 1.38629 1.38629 1.38629 0.03327 4.11284 4.11284 1.46634 0.26236 0.89132 0.52782 18 2.99266 2.89323 3.52275 0.14511 23 U - - : 1.38629 1.38629 1.38629 1.38629 0.03239 4.13914 4.13914 1.46634 0.26236 0.54190 0.87142 19 2.26266 3.16763 0.25027 2.58712 24 G - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 20 2.33429 3.51854 0.18665 3.12940 25 G - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 21 0.09534 3.69421 3.37639 3.44519 26 A - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 22 0.23856 2.55380 2.80156 2.60720 27 A - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 23 2.89486 2.19437 2.68928 0.26744 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 24 2.57065 0.41411 2.40037 1.76082 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 25 3.52313 2.33505 3.33214 0.17677 30 U - - < 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 26 3.38135 0.18466 3.29067 2.32910 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 27 1.35887 3.31033 0.41559 3.06625 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 28 3.04486 2.93709 3.57631 0.13766 33 U - - - 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 29 3.04486 2.93709 3.57631 0.13766 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 30 3.21227 0.28754 3.01417 1.82920 35 C - - < 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 31 1.58064 3.39897 0.33102 3.15678 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 32 2.31039 2.87756 0.31237 2.18217 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 33 3.41249 0.18003 3.31614 2.34862 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 34 3.04486 2.93709 3.57631 0.13766 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 35 2.32425 3.51132 0.18846 3.12248 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 36 0.09534 3.69421 3.37639 3.44519 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 37 1.24837 2.17062 2.39029 0.67862 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 38 1.46881 1.98816 1.10763 1.19564 43 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 39 0.92735 1.98566 1.66232 1.28226 44 a - - _ 1.38629 1.38629 1.38629 1.38629 0.18232 4.16712 1.88933 1.46634 0.26236 1.09861 0.40547 40 1.71209 0.74445 2.48244 1.34333 45 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03652 4.02131 4.02131 1.46634 0.26236 0.18650 1.77114 41 2.41010 1.83973 2.93441 0.35929 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 42 2.55772 2.15803 3.07611 0.27335 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.11703 3.17435 2.67919 0.62597 0.76517 1.09861 0.40547 43 2.67674 3.54376 0.14349 3.32493 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03328 4.11253 4.11253 1.46634 0.26236 0.37272 1.16751 44 3.00141 0.28415 2.69920 2.03739 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 45 3.35755 2.18437 3.18834 0.20901 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 46 2.05079 3.18730 0.24880 2.98879 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.06037 4.16712 3.14445 1.46634 0.26236 1.09861 0.40547 47 1.55243 1.78495 2.40430 0.63463 53 U - - - 1.38629 1.38629 1.38629 1.38629 0.03239 4.13914 4.13914 1.46634 0.26236 0.54190 0.87142 48 3.29952 2.14288 3.13129 0.22049 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.09731 4.16712 2.56100 1.46634 0.26236 1.09861 0.40547 49 2.66170 3.52355 0.14615 3.30640 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03359 4.10340 4.10340 1.46634 0.26236 0.33742 1.25040 50 0.20007 3.52834 2.17151 3.27097 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 51 1.83898 2.57222 0.45533 2.03705 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 52 0.32518 2.55448 2.02332 2.69339 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 53 1.81782 0.56459 2.71560 1.59523 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 54 1.93002 2.26929 2.29173 0.43020 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.14335 4.16712 2.13661 1.46634 0.26236 1.09861 0.40547 55 1.77798 1.09890 2.43434 0.89129 61 u - - : 1.38629 1.38629 1.38629 1.38629 0.03515 4.05891 4.05891 1.46634 0.26236 0.77570 0.61690 56 2.04320 2.59790 0.50391 1.65135 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11642 4.11642 1.46634 0.26236 0.39023 1.12979 57 1.49901 2.28317 0.58184 2.15571 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 58 0.25059 2.85380 2.80665 2.26698 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 59 0.25059 2.85380 2.80665 2.26698 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 60 0.36302 2.58764 2.60229 1.86351 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 61 2.01101 2.41027 2.83186 0.33205 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 62 3.39220 0.11816 3.95532 2.83601 68 C - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 63 3.04486 2.93709 3.57631 0.13766 69 U - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 64 3.15225 4.08418 0.08941 3.65208 70 G - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 65 0.09534 3.69421 3.37639 3.44519 71 A - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 66 2.01946 1.70590 2.25583 0.54322 72 U - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 67 2.15268 2.13835 2.27434 0.41081 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 68 2.01875 1.98025 2.07092 0.50571 74 U - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 69 2.32910 1.64530 2.85977 0.42713 75 U - - : 1.38629 1.38629 1.38629 1.38629 0.03148 4.16712 4.16712 1.46634 0.26236 1.09861 0.40547 70 1.64130 1.11968 2.22234 0.99012 76 u - - : 1.38629 1.38629 1.38629 1.38629 0.01587 4.15150 * 1.46634 0.26236 0.00000 * //