INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD27 ACC RF00086 DESC Small nucleolar RNA SNORD27 STATES 217 NODES 69 CLEN 71 W 95 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 18:58:00 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00086/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 2.894531 CKSUM 1926658560 NULL 0.000 0.000 0.000 0.000 GA 52.00 TC 52.00 NC 51.80 EFP7GF -10.0840 0.71874 ECMLC 0.62251 -5.33269 3.55647 1600000 303666 0.003952 ECMGC 0.36708 -15.99411 -1.01676 1600000 97664 0.004096 ECMLI 0.56339 -3.62280 5.71494 1600000 231158 0.005191 ECMGI 0.40283 -9.19248 3.50589 1600000 66622 0.006004 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 95 117 -9.251 -9.190 -0.179 -3.872 -8.247 -4.574 IL 1 1 2 1 6 1 29 96 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 29 96 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 85 a u - - MP 3 2 3 7 6 2 31 95 117 -9.093 -9.032 -0.021 -7.809 -8.088 -8.484 -3.033 -2.653 -3.091 2.123 -2.741 -3.927 1.487 -3.132 -3.108 1.405 -3.602 -0.505 1.807 -3.281 -0.474 -2.052 ML 4 2 3 7 6 1 27 93 116 -7.209 -7.555 -1.117 -1.034 -7.405 -4.935 1.300 -1.249 -0.986 -0.707 MR 5 2 3 7 6 1 25 93 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 22 90 113 -9.847 -8.545 -4.342 -5.024 -5.042 -0.175 IL 7 7 5 7 6 1 28 94 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 28 94 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 84 c g - - MP 9 8 6 13 6 2 30 93 115 -9.146 -3.938 -0.116 -7.862 -8.142 -8.537 -1.887 -2.033 -2.063 1.391 -0.697 -2.902 1.879 -2.325 -0.108 1.027 -2.677 -0.548 1.364 -2.206 -0.023 -1.264 ML 10 8 6 13 6 1 26 91 114 -6.787 -7.133 -0.764 -1.542 -6.983 -4.513 -0.130 0.569 -0.838 0.061 MR 11 8 6 13 6 1 24 91 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 21 90 112 -9.847 -8.545 -1.077 -5.024 -5.042 -1.117 IL 13 13 5 13 6 1 26 92 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 27 92 114 -2.881 -0.340 -6.392 -4.560 -5.666 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 82 U A - - MP 15 14 6 19 6 2 28 91 113 -9.251 -9.190 -0.019 -7.967 -8.247 -8.642 -5.022 -4.860 -4.763 -1.106 -3.545 -5.248 0.793 -4.292 -4.762 -0.950 -5.093 -2.733 3.615 -5.134 -1.202 -3.484 ML 16 14 6 19 6 1 24 89 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 22 89 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 20 87 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 25 90 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 25 90 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 81 c g - - MP 21 20 6 25 4 2 26 89 111 -7.297 -7.504 -0.042 -5.919 -3.498 -3.361 -3.501 1.216 -2.668 -4.227 2.772 -3.282 -3.485 0.669 -3.955 -1.275 1.601 -3.698 -0.322 -2.369 ML 22 20 6 25 4 1 23 88 111 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 21 88 111 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 19 87 109 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 25 90 112 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 24 89 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 27 26 6 29 3 1 25 87 109 -8.291 -0.016 -6.945 0.842 0.180 -1.330 -0.564 D 28 26 6 29 3 0 19 85 107 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 23 88 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 30 29 3 32 3 1 24 86 108 -8.291 -0.016 -6.945 1.552 -2.084 -0.972 -1.631 D 31 29 3 32 3 0 18 84 106 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 23 87 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 33 32 3 35 3 1 23 84 107 -8.291 -0.016 -6.945 -0.299 -1.157 -1.609 1.269 D 34 32 3 35 3 0 17 83 105 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 22 86 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 36 35 3 38 3 1 22 83 106 -8.291 -0.016 -6.945 -2.260 -3.573 1.839 -2.957 D 37 35 3 38 3 0 16 82 104 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 21 85 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 39 38 3 41 3 1 22 82 105 -8.291 -0.016 -6.945 1.829 -3.034 -2.602 -2.644 D 40 38 3 41 3 0 16 81 103 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 20 84 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 42 41 3 44 3 1 21 81 104 -8.291 -0.016 -6.945 -2.108 -1.998 -2.866 1.757 D 43 41 3 44 3 0 15 80 102 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 20 83 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 45 44 3 47 3 1 20 80 103 -2.283 -0.347 -6.945 -2.260 -3.573 1.839 -2.957 D 46 44 3 47 3 0 14 78 101 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 19 80 103 -2.110 -0.449 -4.810 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - A - - - ML 48 47 3 50 3 1 19 79 101 -8.291 -0.016 -6.945 1.378 -1.863 -0.439 -1.362 D 49 47 3 50 3 0 14 77 100 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 18 80 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - A - - - ML 51 50 3 53 3 1 19 78 100 -8.291 -0.016 -6.945 1.050 -0.129 -1.354 -0.680 D 52 50 3 53 3 0 13 76 99 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 17 79 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - u - - - ML 54 53 3 56 3 1 18 77 99 -8.291 -0.016 -6.945 -0.247 0.342 -1.361 0.585 D 55 53 3 56 3 0 12 75 98 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 17 78 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - a - - - ML 57 56 3 59 3 1 17 76 98 -8.291 -0.016 -6.945 0.987 -1.132 -0.645 -0.117 D 58 56 3 59 3 0 11 74 96 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 16 77 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - a - - - ML 60 59 3 62 3 1 16 75 97 -1.850 -0.485 -6.945 0.157 -0.109 -0.078 0.015 D 61 59 3 62 3 0 11 72 94 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 16 75 98 -1.319 -0.797 -5.398 0.000 0.000 0.000 0.000 [ MATL 17 ] 20 - A - - - ML 63 62 3 65 3 1 15 72 94 -8.291 -0.016 -6.945 1.829 -3.034 -2.602 -2.644 D 64 62 3 65 3 0 10 71 92 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 14 74 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 21 - A - - - ML 66 65 3 68 3 1 15 71 93 -8.291 -0.016 -6.945 1.829 -3.034 -2.602 -2.644 D 67 65 3 68 3 0 9 69 91 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 14 73 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 22 - A - - - ML 69 68 3 71 3 1 14 70 92 -3.510 -0.145 -6.945 1.498 -1.728 -1.703 -0.822 D 70 68 3 71 3 0 9 68 90 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 11 70 92 -1.760 -1.116 -2.040 0.000 0.000 0.000 0.000 [ MATL 20 ] 24 - A - - - ML 72 71 3 74 3 1 13 69 91 -8.164 -0.018 -6.818 1.793 -2.777 -2.369 -2.360 D 73 71 3 74 3 0 8 67 89 -7.161 -2.674 -0.258 IL 74 74 3 74 3 1 13 70 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 25 - u - - - ML 75 74 3 77 3 1 13 68 90 -1.800 -0.507 -6.818 0.001 -0.069 -1.187 0.684 D 76 74 3 77 3 0 8 66 88 -7.161 -0.617 -1.552 IL 77 77 3 77 3 1 12 68 90 -2.255 -0.399 -4.955 0.000 0.000 0.000 0.000 [ MATL 22 ] 27 - G - - - ML 78 77 3 80 3 1 12 66 88 -8.291 -0.016 -6.945 -2.260 -3.573 1.839 -2.957 D 79 77 3 80 3 0 6 65 87 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 10 68 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 28 - A - - - ML 81 80 3 83 3 1 11 65 87 -8.291 -0.016 -6.945 1.829 -3.034 -2.602 -2.644 D 82 80 3 83 3 0 5 64 86 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 10 67 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 29 - C - - - ML 84 83 3 86 3 1 11 64 86 -8.291 -0.016 -6.945 -2.543 1.784 -3.370 -1.800 D 85 83 3 86 3 0 5 63 84 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 9 66 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 30 - A - - - ML 87 86 3 89 3 1 10 63 85 -8.291 -0.016 -6.945 1.829 -3.034 -2.602 -2.644 D 88 86 3 89 3 0 4 62 83 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 8 65 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - A - - - ML 90 89 3 92 3 1 9 62 84 -8.291 -0.016 -6.945 1.829 -3.034 -2.602 -2.644 D 91 89 3 92 3 0 3 61 82 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 8 64 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 32 - G - - - ML 93 92 3 95 3 1 9 61 83 -8.291 -0.016 -6.945 -2.260 -3.573 1.839 -2.957 D 94 92 3 95 3 0 3 60 81 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 7 63 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 33 - C - - - ML 96 95 3 98 3 1 8 60 82 -8.291 -0.016 -6.945 -2.543 1.784 -3.370 -1.800 D 97 95 3 98 3 0 2 59 80 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 7 62 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - A - - - ML 99 98 3 101 3 1 8 59 81 -8.291 -0.016 -6.945 1.829 -3.034 -2.602 -2.644 D 100 98 3 101 3 0 2 58 79 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 6 61 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 35 - U - - - ML 102 101 3 104 3 1 7 58 80 -8.291 -0.016 -6.945 -2.108 -1.998 -2.866 1.757 D 103 101 3 104 3 0 1 57 78 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 5 60 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 36 - A - - - ML 105 104 3 107 3 1 6 57 79 -8.291 -0.016 -6.945 1.829 -3.034 -2.602 -2.644 D 106 104 3 107 3 0 1 56 77 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 5 59 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 37 - U - - - ML 108 107 3 110 3 1 6 56 78 -8.291 -0.016 -6.945 -2.108 -1.998 -2.866 1.757 D 109 107 3 110 3 0 0 55 76 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 4 58 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 38 - G - - - ML 111 110 3 113 3 1 5 55 77 -8.291 -0.016 -6.945 -2.260 -3.573 1.839 -2.957 D 112 110 3 113 3 0 0 53 75 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 4 57 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 39 - u - - - ML 114 113 3 116 3 1 5 54 76 -8.291 -0.016 -6.945 -0.409 -0.589 0.223 0.500 D 115 113 3 116 3 0 0 52 74 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 3 56 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 40 - C - - - ML 117 116 3 119 3 1 4 53 75 -8.291 -0.016 -6.945 -2.543 1.784 -3.370 -1.800 D 118 116 3 119 3 0 0 51 73 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 3 55 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 41 - U - - - ML 120 119 3 122 3 1 4 52 74 -8.291 -0.016 -6.945 -2.108 -1.998 -2.866 1.757 D 121 119 3 122 3 0 0 50 72 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 2 54 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - G - - - ML 123 122 3 125 3 1 3 51 73 -8.291 -0.016 -6.945 -2.260 -3.573 1.839 -2.957 D 124 122 3 125 3 0 0 49 71 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 2 53 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - A - - - ML 126 125 3 128 3 1 3 50 72 -8.291 -0.016 -6.945 1.829 -3.034 -2.602 -2.644 D 127 125 3 128 3 0 0 48 70 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 52 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - A - - - ML 129 128 3 131 3 1 3 49 71 -8.291 -0.016 -6.945 1.486 -1.984 -0.750 -1.512 D 130 128 3 131 3 0 0 47 69 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 51 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - u - - - ML 132 131 3 134 3 1 2 48 70 -8.291 -0.016 -6.945 -0.990 0.413 -1.789 0.908 D 133 131 3 134 3 0 0 46 68 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 50 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 46 - u - - - ML 135 134 3 137 3 1 2 47 69 -8.291 -0.016 -6.945 -0.340 0.047 -1.395 0.845 D 136 134 3 137 3 0 0 45 67 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 49 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 47 - U - - - ML 138 137 3 140 3 1 1 46 68 -2.375 -0.606 -2.735 -0.708 -0.598 -0.871 1.125 D 139 137 3 140 3 0 0 44 65 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 46 68 -1.609 -0.644 -4.959 0.000 0.000 0.000 0.000 [ MATL 43 ] 50 - u - - - ML 141 140 3 143 3 1 1 44 66 -8.070 -0.019 -6.724 0.152 -0.296 -1.103 0.686 D 142 140 3 143 3 0 0 43 65 -7.579 -0.435 -1.971 IL 143 143 3 143 3 1 1 46 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 51 - a - - - ML 144 143 3 146 3 1 1 43 65 -8.291 -0.016 -6.945 0.495 -0.257 -1.123 0.372 D 145 143 3 146 3 0 0 42 63 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 45 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 52 - A - - - ML 147 146 3 149 3 1 1 42 64 -8.291 -0.016 -6.945 1.829 -3.034 -2.602 -2.644 D 148 146 3 149 3 0 0 41 62 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 44 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 53 - u - - - ML 150 149 3 152 3 1 1 41 63 -8.291 -0.016 -6.945 0.450 -1.007 -1.257 0.781 D 151 149 3 152 3 0 0 40 61 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 43 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 54 - G - - - ML 153 152 3 155 3 1 1 40 62 -8.291 -0.016 -6.945 -2.260 -3.573 1.839 -2.957 D 154 152 3 155 3 0 0 39 60 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 42 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 55 - u - - - ML 156 155 3 158 3 1 1 39 61 -8.291 -0.016 -6.945 0.180 -1.035 -1.356 0.991 D 157 155 3 158 3 0 0 38 59 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 41 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 56 - g - - - ML 159 158 3 161 3 1 1 38 60 -3.048 -0.634 -2.091 -0.039 -1.355 0.904 -0.388 D 160 158 3 161 3 0 0 37 58 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 38 60 -1.867 -0.549 -4.567 0.000 0.000 0.000 0.000 [ MATL 50 ] 58 - A - - - ML 162 161 3 164 3 1 1 37 58 -7.921 -0.021 -6.575 1.699 -2.283 -1.924 -1.817 D 163 161 3 164 3 0 0 36 58 -1.127 -3.547 -1.131 IL 164 164 3 164 3 1 1 37 59 -1.941 -0.515 -4.642 0.000 0.000 0.000 0.000 [ MATL 51 ] 60 - U - - - ML 165 164 3 167 3 1 1 36 57 -2.921 -0.219 -6.818 -0.665 -1.033 -0.532 1.130 D 166 164 3 167 3 0 0 32 53 -7.161 -0.617 -1.552 IL 167 167 3 167 3 1 1 37 58 -1.245 -0.877 -4.895 0.000 0.000 0.000 0.000 [ MATL 52 ] 63 - g - - - ML 168 167 3 170 3 1 1 32 52 -8.291 -0.016 -6.945 -0.057 -1.418 0.968 -0.495 D 169 167 3 170 3 0 0 31 51 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 64 - u - - - ML 171 170 3 173 3 1 1 31 51 -8.291 -0.016 -6.945 -0.991 0.394 -1.789 0.921 D 172 170 3 173 3 0 0 30 50 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 65 - C - - - ML 174 173 3 176 3 1 1 30 50 -8.291 -0.016 -6.945 -1.351 1.294 -2.209 -0.090 D 175 173 3 176 3 0 0 29 49 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 66 - A - - - ML 177 176 3 179 3 1 1 29 49 -8.291 -0.016 -6.945 1.306 -1.420 -1.470 -0.334 D 178 176 3 179 3 0 0 28 48 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 67 - U - - - ML 180 179 3 182 3 1 1 28 48 -8.291 -0.016 -6.945 -2.108 -1.998 -2.866 1.757 D 181 179 3 182 3 0 0 27 47 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 68 - C - - - ML 183 182 3 185 3 1 1 27 47 -8.291 -0.016 -6.945 -1.351 1.294 -2.209 -0.090 D 184 182 3 185 3 0 0 26 45 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 69 - U - - - ML 186 185 3 188 3 1 1 26 46 -8.291 -0.016 -6.945 -2.108 -1.998 -2.866 1.757 D 187 185 3 188 3 0 0 25 44 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 70 - U - - - ML 189 188 3 191 3 1 1 25 45 -8.291 -0.016 -6.945 -1.201 -0.383 -1.960 1.346 D 190 188 3 191 3 0 0 24 43 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 27 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 71 - A - - - ML 192 191 3 194 3 1 1 24 43 -8.291 -0.016 -6.945 1.378 -1.863 -0.439 -1.362 D 193 191 3 194 3 0 0 23 42 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 26 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 72 - c - - - ML 195 194 3 197 3 1 1 23 42 -8.291 -0.016 -6.945 0.302 0.319 -1.221 0.124 D 196 194 3 197 3 0 0 22 41 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 73 - U - - - ML 198 197 3 200 3 1 1 22 41 -8.291 -0.016 -6.945 -0.607 -0.575 -0.624 1.017 D 199 197 3 200 3 0 0 20 40 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 24 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 74 - u - - - ML 201 200 3 203 3 1 1 21 40 -2.203 -0.368 -6.945 0.501 -1.008 -1.245 0.736 D 202 200 3 203 3 0 0 17 36 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 21 41 -1.381 -0.765 -5.169 0.000 0.000 0.000 0.000 [ MATL 64 ] 77 - C - - - ML 204 203 3 206 3 1 1 16 34 -8.291 -0.016 -6.945 -2.543 1.784 -3.370 -1.800 D 205 203 3 206 3 0 0 16 34 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 78 - U - - - ML 207 206 3 209 3 1 1 15 33 -8.291 -0.016 -6.945 -2.108 -1.998 -2.866 1.757 D 208 206 3 209 3 0 0 15 33 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 79 - G - - - ML 210 209 3 212 3 1 1 13 31 -8.291 -0.016 -6.945 -2.260 -3.573 1.839 -2.957 D 211 209 3 212 3 0 0 13 32 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 80 - A - - - ML 213 212 3 215 2 1 1 1 1 * 0.000 1.829 -3.034 -2.602 -2.644 D 214 212 3 215 2 0 0 0 0 * 0.000 IL 215 215 3 215 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 68 ] - - - - - - E 216 215 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD27 ACC RF00086 DESC Small nucleolar RNA SNORD27 LENG 71 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 18:58:00 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00086/CM NSEQ 8 EFFN 3.269531 CKSUM 1926658560 STATS LOCAL MSV -8.1046 0.71874 STATS LOCAL VITERBI -9.2265 0.71874 STATS LOCAL FORWARD -3.4539 0.71874 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.06373 1.72682 1.58504 1.30179 1.38629 1.38629 1.38629 1.38629 0.13118 4.18527 2.22817 1.46634 0.26236 0.00000 * 1 1.09482 1.69939 1.58471 1.28159 1 a - - < 1.38629 1.38629 1.38629 1.38629 0.03411 4.08820 4.08820 1.46634 0.26236 2.20594 0.11670 2 1.54940 1.21647 1.45347 1.35637 2 c - - < 1.38629 1.38629 1.38629 1.38629 0.03411 4.08820 4.08820 1.46634 0.26236 0.24884 1.51279 3 3.35563 2.26855 3.20405 0.19717 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 4 1.80073 0.79154 2.05223 1.37347 4 c - - < 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 5 0.78186 1.24239 2.36835 1.83184 5 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 6 0.28837 2.92552 2.08420 2.62453 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 7 1.61712 2.25242 2.57291 0.47792 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 8 3.10022 4.02668 0.09464 3.59635 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 9 0.10093 3.64013 3.32692 3.38566 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 10 2.99242 2.89302 3.52250 0.14514 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 11 3.10022 4.02668 0.09464 3.59635 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.28985 1.44219 4.18527 0.12412 2.14795 1.09861 0.40547 12 0.40818 2.76557 1.69259 2.42860 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 13 0.63382 1.46530 2.38845 1.91965 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 14 1.57676 1.12744 2.37650 0.97652 15 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 15 0.68377 2.21114 1.84794 1.47775 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 16 1.28233 1.45231 1.43136 1.38791 17 a - - _ 1.38629 1.38629 1.38629 1.38629 0.40087 1.15504 4.18527 0.59577 0.80103 1.09861 0.40547 17 0.10093 3.64013 3.32692 3.38566 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 18 0.10093 3.64013 3.32692 3.38566 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 19 0.32329 2.65806 2.64853 1.99954 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 20 0.12280 3.45544 3.15882 3.18183 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.13118 4.18527 2.22817 1.46634 0.26236 1.09861 0.40547 21 1.39185 1.42602 2.24322 0.90386 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.42543 1.10944 4.08820 0.09878 2.36384 0.24884 1.51279 22 3.10022 4.02668 0.09464 3.59635 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 23 0.10093 3.64013 3.32692 3.38566 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 24 3.32851 0.12563 3.89507 2.78273 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 25 0.10093 3.64013 3.32692 3.38566 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 26 0.10093 3.64013 3.32692 3.38566 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 27 3.10022 4.02668 0.09464 3.59635 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 28 3.32851 0.12563 3.89507 2.78273 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 29 0.10093 3.64013 3.32692 3.38566 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 30 2.99242 2.89302 3.52250 0.14514 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 31 0.10093 3.64013 3.32692 3.38566 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 32 2.99242 2.89302 3.52250 0.14514 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 33 3.10022 4.02668 0.09464 3.59635 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 34 1.70325 1.80741 1.21032 1.03358 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 35 3.32851 0.12563 3.89507 2.78273 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 36 2.99242 2.89302 3.52250 0.14514 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 37 3.10022 4.02668 0.09464 3.59635 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 38 0.10093 3.64013 3.32692 3.38566 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 39 0.33321 2.85281 1.91988 2.53734 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 40 2.14438 1.07928 2.70489 0.74204 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 41 1.64553 1.34191 2.40049 0.78730 46 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 42 1.92967 1.82199 2.00592 0.58238 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.49938 1.50266 1.76868 0.40807 1.09342 1.09861 0.40547 43 1.28163 1.59289 2.18075 0.90110 50 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03670 4.01644 4.01644 1.46634 0.26236 0.16420 1.88764 44 1.03329 1.56341 2.19705 1.12820 51 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 45 0.10093 3.64013 3.32692 3.38566 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 46 1.06584 2.12999 2.30268 0.82843 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 47 3.10022 4.02668 0.09464 3.59635 54 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 48 1.26245 2.15441 2.37765 0.67668 55 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 49 1.43176 2.37739 0.72920 1.68188 56 g - - _ 1.38629 1.38629 1.38629 1.38629 0.28985 1.93863 2.22817 0.19955 1.70981 1.09861 0.40547 50 0.18151 3.09428 2.83272 2.78342 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03411 4.08820 4.08820 1.46634 0.26236 2.20594 0.11670 51 1.90372 2.15603 1.76370 0.57307 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.19278 1.84156 4.08820 0.76760 0.62385 0.24884 1.51279 52 1.44559 2.42405 0.68516 1.76130 63 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 53 2.14557 1.09279 2.70509 0.73219 64 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 54 2.41827 0.45725 3.02341 1.47288 65 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 55 0.45664 2.43099 2.47121 1.63909 66 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 56 2.99242 2.89302 3.52250 0.14514 67 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 57 2.41827 0.45725 3.02341 1.47288 68 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 58 2.99242 2.89302 3.52250 0.14514 69 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 59 2.30577 1.66393 2.83466 0.42743 70 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 60 0.40818 2.76557 1.69259 2.42860 71 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 61 1.17481 1.14376 2.27374 1.31090 72 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 62 1.85230 1.80308 1.82373 0.65988 73 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 63 1.02917 2.12953 2.29340 0.86067 74 u - - _ 1.38629 1.38629 1.38629 1.38629 0.30709 1.38952 4.18527 0.56768 0.83664 1.09861 0.40547 64 3.32851 0.12563 3.89507 2.78273 77 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 65 2.99242 2.89302 3.52250 0.14514 78 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 66 3.10022 4.02668 0.09464 3.59635 79 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 67 0.10093 3.64013 3.32692 3.38566 80 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 68 1.56040 2.22684 0.70811 1.66333 81 g - - > 1.38629 1.38629 1.38629 1.38629 0.03091 4.18527 4.18527 1.46634 0.26236 1.09861 0.40547 69 0.21683 3.43112 2.11176 3.18061 82 A - - > 1.38629 1.38629 1.38629 1.38629 0.40493 1.87529 1.71665 0.18792 1.76423 1.09861 0.40547 70 1.27815 1.82686 1.15511 1.40442 84 g - - > 1.38629 1.38629 1.38629 1.38629 0.13988 4.00560 2.18634 1.46634 0.26236 2.62511 0.07519 71 1.39346 1.72931 1.48909 1.05326 85 u - - > 1.38629 1.38629 1.38629 1.38629 0.02073 3.88645 * 1.46634 0.26236 0.00000 * //