INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD28 ACC RF00085 DESC Small nucleolar RNA SNORD28 STATES 229 NODES 73 CLEN 75 W 112 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 05:19:43 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00085/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 3.383789 CKSUM 1215788146 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 50.30 NC 48.90 EFP7GF -9.5503 0.71870 ECMLC 0.61600 -5.58485 3.40548 1600000 305006 0.003934 ECMGC 0.36339 -16.98643 -2.02595 1600000 91849 0.004355 ECMLI 0.55284 -3.85806 5.70679 1600000 237506 0.005053 ECMGI 0.42623 -10.09993 1.82797 1600000 64573 0.006195 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 112 158 -7.328 -8.574 -0.058 -5.027 IL 1 1 2 1 4 1 31 113 159 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 33 114 159 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 87 - A - - MR 3 2 3 5 5 2 34 112 158 -7.510 -0.029 -7.325 -7.538 -8.429 1.737 -2.639 -1.747 -2.262 D 4 2 3 5 5 0 27 110 156 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 1 31 112 158 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 86 g c - - MP 6 5 3 10 6 3 34 111 157 -9.319 -9.258 -0.018 -8.034 -8.314 -8.709 -3.255 -2.594 -3.282 0.910 -3.361 -3.990 0.870 -3.584 -1.587 2.848 -3.855 -0.434 1.348 -3.305 -1.047 -2.303 ML 7 5 3 10 6 1 28 109 155 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 28 109 155 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 23 106 151 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 30 110 156 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 30 110 156 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 85 u g - - MP 12 11 6 16 6 3 32 109 155 -9.319 -9.258 -0.018 -8.034 -8.314 -8.709 -4.015 -4.026 -3.883 -0.309 -2.796 -4.437 2.174 -3.523 -3.898 -0.151 -4.282 -2.074 2.012 -4.158 2.239 -2.782 ML 13 11 6 16 6 1 28 107 153 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 26 107 153 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 23 104 150 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 29 108 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 29 108 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 84 C G - - MP 18 17 6 22 6 2 31 107 153 -9.319 -9.258 -0.018 -8.034 -8.314 -8.709 -4.927 -4.951 -4.540 -1.105 -3.127 -4.886 3.590 -3.974 -4.592 -0.943 -4.829 -2.960 0.378 -4.938 0.033 -3.406 ML 19 17 6 22 6 1 27 106 151 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 25 105 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 22 103 149 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 28 107 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 28 106 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 83 A U - - MP 24 23 6 28 4 2 29 105 151 -7.447 -7.654 -0.037 -6.068 -4.693 -3.530 -4.603 3.702 -5.453 -6.637 -1.091 -4.582 -4.508 0.096 -5.097 -0.889 -1.500 -5.640 -3.026 -3.419 ML 25 23 6 28 4 1 26 104 150 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 4 1 23 104 149 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 27 23 6 28 4 0 22 102 148 -4.568 -4.250 -2.265 -0.520 IL 28 28 5 28 4 1 27 105 151 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 29 29 6 29 3 1 27 105 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 5 - G - - - ML 30 29 6 32 3 1 27 103 149 -8.433 -0.015 -7.087 -0.015 -2.179 1.301 -1.623 D 31 29 6 32 3 0 21 101 147 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 26 104 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - A - - - ML 33 32 3 35 3 1 27 102 148 -8.433 -0.015 -7.087 1.498 -2.114 -0.676 -1.655 D 34 32 3 35 3 0 21 100 146 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 25 103 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - U - - - ML 36 35 3 38 3 1 26 101 147 -8.433 -0.015 -7.087 -2.378 -2.225 -3.144 1.799 D 37 35 3 38 3 0 20 99 145 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 25 102 147 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - G - - - ML 39 38 3 41 3 1 25 100 146 -8.433 -0.015 -7.087 -2.533 -3.876 1.870 -3.253 D 40 38 3 41 3 0 19 98 144 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 24 101 146 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 42 41 3 44 3 1 24 99 145 -8.433 -0.015 -7.087 1.861 -3.314 -2.857 -2.953 D 43 41 3 44 3 0 18 97 143 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 23 100 145 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - U - - - ML 45 44 3 47 3 1 23 98 144 -8.433 -0.015 -7.087 -2.378 -2.225 -3.144 1.799 D 46 44 3 47 3 0 17 96 142 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 22 99 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - U - - - ML 48 47 3 50 3 1 23 97 143 -8.433 -0.015 -7.087 -1.060 -1.325 -0.940 1.378 D 49 47 3 50 3 0 17 95 140 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 21 98 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - U - - - ML 51 50 3 53 3 1 22 96 142 -8.433 -0.015 -7.087 -0.085 -1.197 -1.591 1.195 D 52 50 3 53 3 0 16 94 139 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 21 97 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - G - - - ML 54 53 3 56 3 1 21 95 141 -2.897 -0.220 -7.087 -0.964 -0.821 1.322 -1.248 D 55 53 3 56 3 0 15 93 138 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 20 95 141 -1.950 -0.512 -4.650 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 57 56 3 59 3 1 20 94 140 -8.433 -0.015 -7.087 1.401 -2.010 -0.389 -1.523 D 58 56 3 59 3 0 15 92 137 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 19 95 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 60 59 3 62 3 1 20 93 139 -8.433 -0.015 -7.087 1.719 -2.576 -1.634 -2.192 D 61 59 3 62 3 0 14 91 136 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 18 94 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - u - - - ML 63 62 3 65 3 1 19 92 138 -8.433 -0.015 -7.087 0.011 -0.380 -1.330 0.869 D 64 62 3 65 3 0 13 90 135 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 18 93 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 66 65 3 68 3 1 18 91 137 -8.433 -0.015 -7.087 -0.652 -0.508 -1.693 1.234 D 67 65 3 68 3 0 12 89 134 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 17 92 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - G - - - ML 69 68 3 71 3 1 17 90 136 -8.433 -0.015 -7.087 -0.410 -1.231 1.097 -0.552 D 70 68 3 71 3 0 12 88 133 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 16 91 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 72 71 3 74 3 1 16 89 135 -8.433 -0.015 -7.087 1.171 -1.301 -1.039 -0.224 D 73 71 3 74 3 0 11 87 132 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 15 90 135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 75 74 3 77 3 1 15 88 134 -8.433 -0.015 -7.087 -0.294 -0.860 -1.171 1.130 D 76 74 3 77 3 0 10 86 131 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 15 89 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - a - - - ML 78 77 3 80 3 1 15 87 133 -8.433 -0.015 -7.087 0.975 -1.465 0.078 -0.700 D 79 77 3 80 3 0 9 84 130 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 14 88 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - a - - - ML 81 80 3 83 3 1 14 86 132 -8.433 -0.015 -7.087 0.558 -0.585 -1.194 0.510 D 82 80 3 83 3 0 9 82 128 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 13 87 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - g - - - ML 84 83 3 86 3 1 13 85 131 -1.665 -0.562 -7.087 -0.026 -0.350 0.198 0.119 D 85 83 3 86 3 0 8 76 122 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 12 87 132 -0.583 -1.997 -3.608 0.000 0.000 0.000 0.000 [ MATL 25 ] 33 - C - - - ML 87 86 3 89 3 1 12 63 83 -8.268 -0.017 -6.922 -1.501 1.416 -2.358 -0.353 D 88 86 3 89 3 0 7 62 82 -7.426 -0.493 -1.818 IL 89 89 3 89 3 1 11 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 34 - U - - - ML 90 89 3 92 3 1 12 62 82 -8.433 -0.015 -7.087 -1.396 -1.499 -1.666 1.561 D 91 89 3 92 3 0 5 61 81 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 10 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 35 - G - - - ML 93 92 3 95 3 1 11 61 81 -8.433 -0.015 -7.087 -0.844 -1.753 1.492 -1.587 D 94 92 3 95 3 0 5 60 80 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 9 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 36 - A - - - ML 96 95 3 98 3 1 10 60 80 -8.433 -0.015 -7.087 1.861 -3.314 -2.857 -2.953 D 97 95 3 98 3 0 4 59 79 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 9 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 37 - u - - - ML 99 98 3 101 3 1 10 59 79 -8.433 -0.015 -7.087 -0.126 -0.440 -0.783 0.820 D 100 98 3 101 3 0 3 58 77 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 8 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 38 - g - - - ML 102 101 3 104 3 1 9 58 78 -4.846 -0.062 -7.087 0.189 -0.561 0.622 -0.637 D 103 101 3 104 3 0 3 56 76 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 7 59 79 -1.582 -0.702 -4.283 0.000 0.000 0.000 0.000 [ MATL 31 ] 40 - c - - - ML 105 104 3 107 3 1 8 57 76 -8.433 -0.015 -7.087 -0.312 0.859 -1.606 0.074 D 106 104 3 107 3 0 2 55 75 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 7 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 41 - U - - - ML 108 107 3 110 3 1 8 56 75 -8.433 -0.015 -7.087 -1.779 -1.303 -2.526 1.646 D 109 107 3 110 3 0 2 54 74 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 6 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 42 - C - - - ML 111 110 3 113 3 1 7 55 74 -8.433 -0.015 -7.087 -1.892 1.561 -2.763 -0.659 D 112 110 3 113 3 0 1 53 73 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 5 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 43 - U - - - ML 114 113 3 116 3 1 7 54 73 -8.433 -0.015 -7.087 -0.952 -0.378 -1.404 1.224 D 115 113 3 116 3 0 0 52 72 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 5 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 44 - G - - - ML 117 116 3 119 3 1 6 53 72 -8.433 -0.015 -7.087 -0.372 -1.570 1.124 -0.492 D 118 116 3 119 3 0 0 51 71 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 4 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 45 - U - - - ML 120 119 3 122 3 1 5 52 71 -8.433 -0.015 -7.087 -2.378 -2.225 -3.144 1.799 D 121 119 3 122 3 0 0 50 70 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 4 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 46 - G - - - ML 123 122 3 125 3 1 4 51 70 -8.433 -0.015 -7.087 -1.441 -3.122 1.743 -2.557 D 124 122 3 125 3 0 0 49 69 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 3 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 47 - A - - - ML 126 125 3 128 3 1 3 49 69 -8.433 -0.015 -7.087 1.654 -2.392 -1.287 -1.985 D 127 125 3 128 3 0 0 48 68 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 3 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 48 - G - - - ML 129 128 3 131 3 1 2 48 68 -8.433 -0.015 -7.087 0.254 -2.043 1.142 -1.482 D 130 128 3 131 3 0 0 47 67 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 2 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 49 - G - - - ML 132 131 3 134 3 1 1 47 67 -8.433 -0.401 -2.060 -2.533 -3.876 1.870 -3.253 D 133 131 3 134 3 0 0 46 66 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 2 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 50 - u - - - ML 135 134 3 137 3 1 2 47 66 -3.462 -0.153 -6.705 -0.023 -0.581 -0.560 0.739 D 136 134 3 137 3 0 0 45 64 -8.165 -0.275 -2.557 IL 137 137 3 137 3 1 1 48 67 -1.485 -0.738 -4.539 0.000 0.000 0.000 0.000 [ MATL 42 ] 53 - a - - - ML 138 137 3 140 3 1 1 45 64 -8.433 -0.015 -7.087 0.790 -0.511 -0.682 -0.080 D 139 137 3 140 3 0 0 43 63 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 54 - u - - - ML 141 140 3 143 3 1 1 44 63 -8.433 -0.015 -7.087 0.094 -0.284 -0.977 0.681 D 142 140 3 143 3 0 0 42 62 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 55 - a - - - ML 144 143 3 146 3 1 1 43 62 -8.433 -0.015 -7.087 0.246 -0.441 0.126 -0.019 D 145 143 3 146 3 0 0 41 61 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 56 - A - - - ML 147 146 3 149 3 1 1 41 61 -8.433 -0.015 -7.087 1.346 -1.168 -1.545 -0.576 D 148 146 3 149 3 0 0 40 60 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 57 - c - - - ML 150 149 3 152 3 1 1 40 60 -8.433 -0.110 -3.832 -0.082 0.726 -0.861 -0.233 D 151 149 3 152 3 0 0 39 58 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 58 - A - - - ML 153 152 3 155 3 1 1 39 59 -8.339 -0.016 -6.993 1.104 -1.240 -1.347 0.048 D 154 152 3 155 3 0 0 38 57 -7.025 -2.538 -0.286 IL 155 155 3 155 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 59 - g - - - ML 156 155 3 158 3 1 1 38 58 -8.339 -0.016 -6.993 -0.014 -0.505 0.397 -0.017 D 157 155 3 158 3 0 0 37 56 -7.025 -2.538 -0.286 IL 158 158 3 158 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 60 - u - - - ML 159 158 3 161 3 1 1 37 56 -8.339 -0.016 -6.993 -0.309 -0.184 -1.147 0.896 D 160 158 3 161 3 0 0 36 55 -7.025 -0.695 -1.417 IL 161 161 3 161 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 61 - U - - - ML 162 161 3 164 3 1 1 36 55 -8.433 -0.015 -7.087 -1.772 -1.290 -2.519 1.643 D 163 161 3 164 3 0 0 35 54 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 62 - a - - - ML 165 164 3 167 3 1 1 35 54 -8.433 -0.015 -7.087 0.897 -0.866 -1.252 0.226 D 166 164 3 167 3 0 0 34 53 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 63 - A - - - ML 168 167 3 170 3 1 1 34 53 -8.433 -0.015 -7.087 1.449 -1.682 -1.712 -0.617 D 169 167 3 170 3 0 0 33 52 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 64 - U - - - ML 171 170 3 173 3 1 1 33 52 -8.433 -0.015 -7.087 -1.197 -1.393 -1.231 1.463 D 172 170 3 173 3 0 0 32 51 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 65 - A - - - ML 174 173 3 176 3 1 1 32 51 -8.433 -0.015 -7.087 1.706 -2.351 -2.216 -1.617 D 175 173 3 176 3 0 0 31 50 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 66 - G - - - ML 177 176 3 179 3 1 1 31 50 -8.433 -0.015 -7.087 -2.533 -3.876 1.870 -3.253 D 178 176 3 179 3 0 0 30 49 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 67 - C - - - ML 180 179 3 182 3 1 1 30 49 -8.433 -0.015 -7.087 -2.875 1.827 -3.689 -2.076 D 181 179 3 182 3 0 0 29 48 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 68 - A - - - ML 183 182 3 185 3 1 1 29 48 -8.433 -0.015 -7.087 1.861 -3.314 -2.857 -2.953 D 184 182 3 185 3 0 0 28 47 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 69 - U - - - ML 186 185 3 188 3 1 1 28 46 -8.433 -0.015 -7.087 -2.378 -2.225 -3.144 1.799 D 187 185 3 188 3 0 0 27 46 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 70 - G - - - ML 189 188 3 191 3 1 1 26 45 -8.433 -0.015 -7.087 -1.423 -3.109 1.740 -2.545 D 190 188 3 191 3 0 0 25 44 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 71 - U - - - ML 192 191 3 194 3 1 1 25 44 -8.433 -0.015 -7.087 -1.060 -1.325 -0.940 1.378 D 193 191 3 194 3 0 0 24 43 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 72 - U - - - ML 195 194 3 197 3 1 1 24 43 -8.433 -0.015 -7.087 -1.177 -1.573 -2.242 1.590 D 196 194 3 197 3 0 0 23 42 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 73 - A - - - ML 198 197 3 200 3 1 1 23 42 -8.433 -0.015 -7.087 1.498 -2.114 -0.676 -1.655 D 199 197 3 200 3 0 0 22 41 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 74 - G - - - ML 201 200 3 203 3 1 1 22 41 -8.433 -0.015 -7.087 -0.890 -2.730 1.627 -2.178 D 202 200 3 203 3 0 0 21 40 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 75 - A - - - ML 204 203 3 206 3 1 1 21 39 -8.433 -0.015 -7.087 1.861 -3.314 -2.857 -2.953 D 205 203 3 206 3 0 0 20 39 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 76 - G - - - ML 207 206 3 209 3 1 1 20 38 -8.433 -0.015 -7.087 -2.533 -3.876 1.870 -3.253 D 208 206 3 209 3 0 0 19 38 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 77 - U - - - ML 210 209 3 212 3 1 1 18 37 -8.433 -0.015 -7.087 -2.378 -2.225 -3.144 1.799 D 211 209 3 212 3 0 0 18 37 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 78 - U - - - ML 213 212 3 215 3 1 1 17 36 -8.433 -0.015 -7.087 -2.378 -2.225 -3.144 1.799 D 214 212 3 215 3 0 0 17 35 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 79 - C - - - ML 216 215 3 218 3 1 1 16 34 -8.433 -0.015 -7.087 -1.554 1.507 -1.525 -1.088 D 217 215 3 218 3 0 0 16 34 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 80 - U - - - ML 219 218 3 221 3 1 1 14 33 -8.433 -0.015 -7.087 -2.378 -2.225 -3.144 1.799 D 220 218 3 221 3 0 0 15 33 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 81 - G - - - ML 222 221 3 224 3 1 1 13 31 -8.433 -0.015 -7.087 -1.471 -2.431 1.600 -1.244 D 223 221 3 224 3 0 0 13 32 -6.174 -1.687 -0.566 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 82 - A - - - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.861 -3.314 -2.857 -2.953 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 72 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD28 ACC RF00085 DESC Small nucleolar RNA SNORD28 LENG 75 MAXL 158 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 05:19:44 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00085/CM NSEQ 20 EFFN 3.696289 CKSUM 1215788146 STATS LOCAL MSV -8.3086 0.71870 STATS LOCAL VITERBI -9.3206 0.71870 STATS LOCAL FORWARD -3.3761 0.71870 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.22881 1.85350 1.40597 1.18567 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 0.00000 * 1 1.97458 2.08819 0.63474 1.57410 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 2 2.81263 1.22071 2.60780 0.55995 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 3 3.34305 0.25637 3.15291 1.90996 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 4 0.17423 3.48542 2.35116 3.38142 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 5 1.40529 2.96507 0.46561 2.58500 5 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 6 0.33200 2.92326 1.86070 2.61469 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 7 3.14337 3.02015 3.67720 0.12468 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 8 3.24847 4.19015 0.08056 3.75397 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 9 0.08573 3.79544 3.46934 3.55632 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 10 3.14337 3.02015 3.67720 0.12468 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 11 2.18256 2.35944 2.05360 0.40872 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 12 1.45337 2.26233 2.53821 0.53939 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 13 2.11757 1.96331 0.44400 2.32467 13 G - - _ 1.38629 1.38629 1.38629 1.38629 0.18351 1.87637 4.23300 0.17977 1.80462 1.09861 0.40547 14 0.39937 2.84999 1.65536 2.52084 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 15 0.18157 3.25227 2.55716 2.99918 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 16 1.38220 1.65469 2.33718 0.77387 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 17 1.86778 1.75016 2.60827 0.51395 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 18 1.69844 2.26840 0.60200 1.79673 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 19 0.55930 2.32447 2.13102 1.55192 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 20 1.60366 2.00765 2.21945 0.58722 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 21 0.69726 2.44387 1.32398 1.90277 22 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 22 0.99105 1.80217 2.23955 1.02899 23 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 23 1.41305 1.62787 1.23730 1.30901 24 g - - _ 1.38629 1.38629 1.38629 1.38629 0.44467 1.06579 4.23300 1.27484 0.32777 1.09861 0.40547 24 2.50387 0.38098 3.10432 1.65975 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 25 2.42748 2.48788 2.58254 0.28359 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 26 2.01123 2.63196 0.33377 2.55077 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 27 0.08573 3.79544 3.46934 3.55632 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 28 1.48060 1.69793 1.93515 0.80960 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 29 1.26155 1.77707 0.93455 1.86503 38 g - - _ 1.38629 1.38629 1.38629 1.38629 0.06473 3.03309 4.23300 0.52175 0.90012 1.09861 0.40547 30 1.61981 0.76931 2.54686 1.34551 40 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 31 2.70029 2.33063 3.21847 0.22871 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 32 2.78748 0.28473 3.39465 1.87959 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 33 2.09527 1.65513 2.39106 0.52027 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 34 1.66839 2.52086 0.58532 1.74794 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 35 3.14337 3.02015 3.67720 0.12468 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 36 2.43833 3.63998 0.16518 3.25183 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 37 0.22548 3.12028 2.30364 2.85029 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 38 1.21140 2.86969 0.57581 2.48584 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 39 3.24847 4.19015 0.08056 3.75397 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.32089 4.23300 1.34711 1.46634 0.26236 1.09861 0.40547 40 1.40751 1.80017 1.77641 0.86576 50 u - - _ 1.38629 1.38629 1.38629 1.38629 0.14140 2.18363 3.95133 0.58309 0.81684 0.10581 2.29855 41 0.82880 1.74446 1.86858 1.45096 53 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 42 1.32165 1.58432 2.07673 0.90912 54 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 43 1.21747 1.69299 1.28975 1.40766 55 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 44 0.43581 2.22231 2.50791 1.81118 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 45 1.45396 0.86272 1.99552 1.56829 57 c - - _ 1.38629 1.38629 1.38629 1.38629 0.10022 4.23300 2.51516 1.46634 0.26236 1.09861 0.40547 46 0.60459 2.28372 2.36006 1.35719 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16436 4.16436 1.46634 0.26236 2.02452 0.14163 47 1.40602 1.73951 1.09513 1.40739 59 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16436 4.16436 1.46634 0.26236 2.02452 0.14163 48 1.61477 1.51235 2.20103 0.75506 60 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16436 4.16436 1.46634 0.26236 0.30668 1.33138 49 2.69532 2.32110 3.21351 0.23055 61 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 50 0.75076 2.00697 2.28604 1.23124 62 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 51 0.36426 2.60536 2.63111 1.83626 63 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 52 2.28307 2.41084 2.26532 0.35028 64 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 53 0.18937 3.08767 2.99954 2.56258 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 54 3.24847 4.19015 0.08056 3.75397 66 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 55 3.51005 0.10553 4.06527 2.93568 67 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 56 0.08573 3.79544 3.46934 3.55632 68 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 57 3.14337 3.02015 3.67720 0.12468 69 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 58 2.42482 3.63033 0.16731 3.24269 70 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 59 2.18256 2.35944 2.05360 0.40872 71 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 60 2.25161 2.54059 3.01626 0.26531 72 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 61 0.33200 2.92326 1.86070 2.61469 73 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 62 2.03733 3.35806 0.24329 2.98028 74 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 63 0.08573 3.79544 3.46934 3.55632 75 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 64 3.24847 4.19015 0.08056 3.75397 76 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 65 3.14337 3.02015 3.67720 0.12468 77 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 66 3.14337 3.02015 3.67720 0.12468 78 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 67 2.56083 0.31409 2.48032 2.22017 79 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 68 3.14337 3.02015 3.67720 0.12468 80 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 69 2.48007 3.15087 0.25918 2.28509 81 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 70 0.08573 3.79544 3.46934 3.55632 82 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 71 3.60004 2.70928 3.29303 0.14047 83 U - - > 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 72 2.41799 3.31332 0.18665 3.10630 84 G - - > 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 73 1.30657 2.77635 0.52476 2.58637 85 G - - > 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 74 1.63925 0.73406 1.90874 1.72794 86 c - - > 1.38629 1.38629 1.38629 1.38629 0.02945 4.23300 4.23300 1.46634 0.26236 1.09861 0.40547 75 0.16923 3.29810 2.64007 3.04964 87 A - - : 1.38629 1.38629 1.38629 1.38629 0.01483 4.21839 * 1.46634 0.26236 0.00000 * //