INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD73 ACC RF00071 DESC Small nucleolar RNA SNORD73 STATES 220 NODES 70 CLEN 72 W 94 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 02:45:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00071/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 25 EFFN 2.822876 CKSUM 1959683006 NULL 0.000 0.000 0.000 0.000 GA 42.00 TC 42.20 NC 41.90 EFP7GF -9.3013 0.71875 ECMLC 0.60732 -5.21169 4.08291 1600000 339385 0.003536 ECMGC 0.39631 -14.03829 -0.38727 1600000 89456 0.004471 ECMLI 0.56521 -4.10504 5.55517 1600000 282116 0.004254 ECMGI 0.40879 -9.24919 3.28386 1600000 67161 0.005956 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 94 125 -9.241 -9.180 -0.035 -7.957 -6.129 -8.631 IL 1 1 2 1 6 1 28 95 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 28 95 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 86 A U - - MP 3 2 3 7 6 3 31 94 125 -9.225 -9.164 -0.019 -7.941 -8.220 -8.615 -3.701 -2.878 -3.732 3.262 -4.137 -4.960 0.053 -3.903 -3.729 1.325 -4.267 -0.462 -0.246 -4.131 -1.838 -1.380 ML 4 2 3 7 6 1 26 92 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 25 92 123 -7.175 -5.904 -1.298 -5.883 -1.017 -4.096 0.115 -0.375 -0.474 0.512 D 6 2 3 7 6 0 21 89 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 27 93 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 27 93 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 85 A U - - MP 9 8 6 13 6 3 29 92 123 -9.241 -9.180 -0.019 -7.957 -8.236 -8.631 -4.371 -3.268 -4.331 3.607 -4.981 -6.114 -0.641 -4.333 -4.217 0.450 -4.792 -0.662 -1.055 -5.193 -2.579 -3.143 ML 10 8 6 13 6 1 25 90 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 24 90 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 20 87 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 26 91 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 26 91 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 84 u a - - MP 15 14 6 19 6 3 28 90 121 -9.241 -9.180 -0.019 -7.957 -8.236 -8.631 -3.770 -3.777 -3.671 -0.107 -2.656 -4.253 1.784 -3.360 -3.689 0.067 -4.089 -1.847 2.535 -3.931 1.850 -2.591 ML 16 14 6 19 6 1 24 88 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 22 88 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 20 86 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 25 89 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 25 89 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 83 g c - - MP 21 20 6 25 4 2 26 88 119 -7.274 -7.481 -0.042 -5.895 -3.741 -2.597 -3.733 2.083 -4.433 -4.537 0.089 -4.120 -3.800 2.922 -4.222 0.191 -0.180 -3.803 -1.868 -2.641 ML 22 20 6 25 4 1 23 87 118 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 21 86 117 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 19 85 116 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 25 88 119 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 24 88 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 27 26 6 29 3 1 24 86 117 -8.270 -0.017 -6.924 1.013 -0.936 -0.946 -0.090 D 28 26 6 29 3 0 19 84 115 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 23 87 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 30 29 3 32 3 1 24 85 116 -8.270 -0.017 -6.924 0.869 -1.675 0.481 -1.105 D 31 29 3 32 3 0 18 83 114 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 23 86 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 33 32 3 35 3 1 23 84 115 -8.270 -0.017 -6.924 -1.240 -1.352 -1.640 1.518 D 34 32 3 35 3 0 17 82 113 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 22 85 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 36 35 3 38 3 1 22 83 114 -8.270 -0.017 -6.924 -2.216 -3.524 1.834 -2.909 D 37 35 3 38 3 0 17 81 112 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 21 84 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 39 38 3 41 3 1 21 82 113 -8.270 -0.017 -6.924 1.823 -2.990 -2.562 -2.596 D 40 38 3 41 3 0 16 80 111 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 20 83 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 42 41 3 44 3 1 20 81 112 -8.270 -0.017 -6.924 -2.065 -1.963 -2.823 1.750 D 43 41 3 44 3 0 15 79 110 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 20 82 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 45 44 3 47 3 1 20 80 111 -8.270 -0.017 -6.924 -2.216 -3.524 1.834 -2.909 D 46 44 3 47 3 0 15 78 109 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 19 81 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 48 47 3 50 3 1 19 79 110 -8.270 -0.017 -6.924 1.823 -2.990 -2.562 -2.596 D 49 47 3 50 3 0 14 77 108 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 18 80 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - c - - - ML 51 50 3 53 3 1 18 78 109 -8.270 -0.017 -6.924 -0.056 0.723 -0.735 -0.346 D 52 50 3 53 3 0 13 76 107 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 17 79 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 54 53 3 56 3 1 17 77 108 -8.270 -0.017 -6.924 1.823 -2.990 -2.562 -2.596 D 55 53 3 56 3 0 13 75 106 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 17 78 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 57 56 3 59 3 1 16 76 107 -8.270 -0.017 -6.924 1.823 -2.990 -2.562 -2.596 D 58 56 3 59 3 0 12 74 105 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 16 77 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 60 59 3 62 3 1 15 75 106 -8.270 -0.017 -6.924 1.532 -1.823 -1.384 -1.178 D 61 59 3 62 3 0 11 73 104 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 15 76 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - a - - - ML 63 62 3 65 3 1 14 74 105 -8.270 -0.188 -3.069 0.967 -0.760 -0.933 -0.104 D 64 62 3 65 3 0 11 72 103 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 15 75 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 66 65 3 68 3 1 15 73 104 -8.100 -0.019 -6.754 -1.740 -1.693 -2.486 1.684 D 67 65 3 68 3 0 10 71 102 -7.355 -0.523 -1.747 IL 68 68 3 68 3 1 13 74 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - G - - - ML 69 68 3 71 3 1 14 72 103 -8.270 -0.017 -6.924 -2.216 -3.524 1.834 -2.909 D 70 68 3 71 3 0 8 70 101 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 13 73 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 72 71 3 74 3 1 14 71 102 -8.270 -0.017 -6.924 -2.065 -1.963 -2.823 1.750 D 73 71 3 74 3 0 8 69 100 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 12 72 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 75 74 3 77 3 1 13 70 101 -8.270 -0.017 -6.924 -2.065 -1.963 -2.823 1.750 D 76 74 3 77 3 0 7 68 99 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 11 71 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 78 77 3 80 3 1 12 69 100 -8.270 -0.017 -6.924 -2.065 -1.963 -2.823 1.750 D 79 77 3 80 3 0 6 67 98 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 11 70 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 81 80 3 83 3 1 12 68 99 -8.270 -0.017 -6.924 -1.595 1.471 -2.451 -0.486 D 82 80 3 83 3 0 6 66 97 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 10 69 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 84 83 3 86 3 1 11 67 98 -8.270 -0.017 -6.924 -1.124 -2.745 1.665 -2.173 D 85 83 3 86 3 0 5 65 96 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 10 68 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - G - - - ML 87 86 3 89 3 1 11 66 97 -8.270 -0.017 -6.924 -2.216 -3.524 1.834 -2.909 D 88 86 3 89 3 0 5 64 95 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 9 67 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - U - - - ML 90 89 3 92 3 1 10 65 96 -8.270 -0.017 -6.924 -2.065 -1.963 -2.823 1.750 D 91 89 3 92 3 0 4 63 94 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 8 66 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - C - - - ML 93 92 3 95 3 1 9 64 95 -8.270 -0.017 -6.924 -2.490 1.776 -3.318 -1.757 D 94 92 3 95 3 0 4 62 93 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 8 65 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 96 95 3 98 3 1 9 63 94 -8.270 -0.017 -6.924 -2.490 1.776 -3.318 -1.757 D 97 95 3 98 3 0 4 61 92 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 7 64 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - C - - - ML 99 98 3 101 3 1 8 62 93 -8.270 -0.017 -6.924 -2.490 1.776 -3.318 -1.757 D 100 98 3 101 3 0 3 60 91 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 7 63 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - A - - - ML 102 101 3 104 3 1 8 61 92 -8.270 -0.017 -6.924 1.823 -2.990 -2.562 -2.596 D 103 101 3 104 3 0 3 59 90 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 6 62 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - a - - - ML 105 104 3 107 3 1 7 60 91 -8.270 -0.017 -6.924 0.519 -1.169 0.362 -0.256 D 106 104 3 107 3 0 2 58 89 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 6 61 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - A - - - ML 108 107 3 110 3 1 7 59 90 -8.270 -0.017 -6.924 1.176 -0.891 -1.312 -0.325 D 109 107 3 110 3 0 2 57 88 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 5 60 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - U - - - ML 111 110 3 113 3 1 6 58 89 -8.270 -0.017 -6.924 -2.065 -1.963 -2.823 1.750 D 112 110 3 113 3 0 1 56 87 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 5 59 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - G - - - ML 114 113 3 116 3 1 5 57 88 -8.270 -0.017 -6.924 -2.216 -3.524 1.834 -2.909 D 115 113 3 116 3 0 1 55 86 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 4 58 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - A - - - ML 117 116 3 119 3 1 5 56 87 -8.270 -0.017 -6.924 1.823 -2.990 -2.562 -2.596 D 118 116 3 119 3 0 0 54 85 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 4 57 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - - - ML 120 119 3 122 3 1 4 55 86 -8.270 -0.058 -4.790 -0.902 -0.721 -1.783 1.360 D 121 119 3 122 3 0 0 53 84 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 4 56 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - g - - - ML 123 122 3 125 3 1 4 54 85 -8.229 -0.017 -6.883 0.505 -1.398 0.653 -0.669 D 124 122 3 125 3 0 0 52 83 -6.573 -1.067 -0.965 IL 125 125 3 125 3 1 3 55 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - u - - - ML 126 125 3 128 3 1 4 53 84 -8.270 -0.017 -6.924 -0.227 0.229 -0.754 0.466 D 127 125 3 128 3 0 0 51 82 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 2 54 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - a - - - ML 129 128 3 131 3 1 4 52 83 -5.267 -0.050 -6.924 0.297 0.208 -0.740 0.025 D 130 128 3 131 3 0 0 50 81 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 2 53 84 -1.161 -0.977 -4.476 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - c - - - ML 132 131 3 134 3 1 3 50 81 -8.270 -0.017 -6.924 -0.588 0.605 -1.538 0.556 D 133 131 3 134 3 0 0 48 80 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 2 51 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - A - - - ML 135 134 3 137 3 1 3 49 80 -8.270 -0.017 -6.924 1.030 -0.857 -0.519 -0.497 D 136 134 3 137 3 0 0 47 79 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 50 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 46 - c - - - ML 138 137 3 140 3 1 2 48 79 -8.270 -0.017 -6.924 0.095 0.296 -0.291 -0.173 D 139 137 3 140 3 0 0 46 78 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 49 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 47 - U - - - ML 141 140 3 143 3 1 2 47 78 -8.270 -0.017 -6.924 -2.065 -1.963 -2.823 1.750 D 142 140 3 143 3 0 0 45 77 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 48 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - G - - - ML 144 143 3 146 3 1 2 46 77 -8.270 -0.017 -6.924 -2.216 -3.524 1.834 -2.909 D 145 143 3 146 3 0 0 44 75 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 47 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - - - ML 147 146 3 149 3 1 2 45 76 -8.270 -0.017 -6.924 1.823 -2.990 -2.562 -2.596 D 148 146 3 149 3 0 0 43 74 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 46 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - U - - - ML 150 149 3 152 3 1 1 44 75 -8.270 -0.360 -2.199 -2.065 -1.963 -2.823 1.750 D 151 149 3 152 3 0 0 42 73 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 46 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - u - - - ML 153 152 3 155 3 1 1 44 75 -7.930 -0.125 -3.667 0.032 -0.842 -1.194 0.987 D 154 152 3 155 3 0 0 40 71 -7.937 -3.450 -0.145 IL 155 155 3 155 3 1 1 45 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - A - - - ML 156 155 3 158 3 1 1 43 74 -4.910 -0.066 -6.482 1.143 -1.104 -1.113 -0.212 D 157 155 3 158 3 0 0 38 69 -8.178 -0.272 -2.570 IL 158 158 3 158 3 1 1 48 79 -0.855 -1.284 -4.773 0.000 0.000 0.000 0.000 [ MATL 49 ] 62 - a - - - ML 159 158 3 161 3 1 1 35 54 -8.270 -0.017 -6.924 0.567 -0.930 -0.859 0.528 D 160 158 3 161 3 0 0 33 53 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 63 - A - - - ML 162 161 3 164 3 1 1 33 53 -8.270 -0.081 -4.275 1.665 -2.170 -2.015 -1.480 D 163 161 3 164 3 0 0 32 51 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 64 - C - - - ML 165 164 3 167 3 1 1 32 51 -8.205 -0.017 -6.860 -0.338 1.064 -1.345 -0.466 D 166 164 3 167 3 0 0 31 50 -6.755 -2.268 -0.353 IL 167 167 3 167 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 65 - u - - - ML 168 167 3 170 3 1 1 31 50 -8.205 -0.086 -4.197 -0.097 0.322 -1.262 0.483 D 169 167 3 170 3 0 0 30 49 -6.755 -1.484 -0.659 IL 170 170 3 170 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 66 - g - - - ML 171 170 3 173 3 1 1 30 49 -8.168 -0.018 -6.822 -0.094 -0.804 0.458 0.159 D 172 170 3 173 3 0 0 29 48 -7.001 -2.514 -0.291 IL 173 173 3 173 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 67 - U - - - ML 174 173 3 176 3 1 1 29 48 -8.168 -0.131 -3.580 -0.657 -0.899 -1.639 1.327 D 175 173 3 176 3 0 0 28 47 -7.001 -1.599 -0.595 IL 176 176 3 176 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 68 - U - - - ML 177 176 3 179 3 1 1 28 47 -8.096 -0.019 -6.750 -0.559 -0.771 -1.524 1.256 D 178 176 3 179 3 0 0 27 46 -7.373 -0.731 -1.353 IL 179 179 3 179 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 69 - A - - - ML 180 179 3 182 3 1 1 27 46 -8.241 -0.017 -6.895 1.288 -1.257 -0.668 -0.971 D 181 179 3 182 3 0 0 26 45 -6.465 -1.978 -0.445 IL 182 182 3 182 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 70 - c - - - ML 183 182 3 185 3 1 1 26 45 -8.241 -0.017 -6.895 -0.410 0.847 -1.277 0.052 D 184 182 3 185 3 0 0 25 44 -6.465 -1.978 -0.445 IL 185 185 3 185 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 71 - A - - - ML 186 185 3 188 3 1 1 25 44 -8.241 -0.017 -6.895 1.023 -0.581 -0.645 -0.600 D 187 185 3 188 3 0 0 24 43 -6.465 -1.197 -0.856 IL 188 188 3 188 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 72 - U - - - ML 189 188 3 191 3 1 1 24 42 -8.270 -0.017 -6.924 -0.527 -1.214 -1.727 1.364 D 190 188 3 191 3 0 0 23 42 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 73 - U - - - ML 192 191 3 194 3 1 1 22 41 -8.270 -0.017 -6.924 -2.065 -1.963 -2.823 1.750 D 193 191 3 194 3 0 0 22 41 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 74 - U - - - ML 195 194 3 197 3 1 1 21 40 -8.270 -0.017 -6.924 -1.156 -1.448 -2.109 1.562 D 196 194 3 197 3 0 0 21 39 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 75 - u - - - ML 198 197 3 200 3 1 1 20 39 -8.270 -0.017 -6.924 0.171 -0.920 -0.834 0.835 D 199 197 3 200 3 0 0 20 38 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 76 - U - - - ML 201 200 3 203 3 1 1 19 37 -8.270 -0.424 -1.992 -1.101 -1.047 -1.553 1.438 D 202 200 3 203 3 0 0 18 37 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 77 - U - - - ML 204 203 3 206 3 1 1 18 36 -2.169 -0.383 -6.522 -0.698 -0.103 -1.442 1.060 D 205 203 3 206 3 0 0 16 35 -8.092 -0.291 -2.484 IL 206 206 3 206 3 1 1 18 36 -2.001 -0.491 -4.701 0.000 0.000 0.000 0.000 [ MATL 65 ] 79 - C - - - ML 207 206 3 209 3 1 1 16 35 -8.270 -0.017 -6.924 -2.490 1.776 -3.318 -1.757 D 208 206 3 209 3 0 0 16 34 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 80 - U - - - ML 210 209 3 212 3 1 1 15 33 -8.270 -0.017 -6.924 -2.065 -1.963 -2.823 1.750 D 211 209 3 212 3 0 0 15 33 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 81 - G - - - ML 213 212 3 215 3 1 1 13 31 -8.270 -0.017 -6.924 -2.216 -3.524 1.834 -2.909 D 214 212 3 215 3 0 0 13 32 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 82 - A - - - ML 216 215 3 218 2 1 1 1 1 * 0.000 1.823 -2.990 -2.562 -2.596 D 217 215 3 218 2 0 0 0 0 * 0.000 IL 218 218 3 218 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 69 ] - - - - - - E 219 218 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD73 ACC RF00071 DESC Small nucleolar RNA SNORD73 LENG 72 MAXL 173 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 02:45:35 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00071/CM NSEQ 25 EFFN 3.091431 CKSUM 1959683006 STATS LOCAL MSV -8.0900 0.71875 STATS LOCAL VITERBI -9.4333 0.71875 STATS LOCAL FORWARD -3.5348 0.71875 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.22571 1.72729 1.60475 1.11552 1.38629 1.38629 1.38629 1.38629 0.05891 4.15158 3.18283 1.46634 0.26236 0.00000 * 1 0.43974 2.70407 1.61857 2.40040 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.03284 4.12552 4.12552 1.46634 0.26236 0.56481 0.84041 2 0.22676 3.20255 2.13675 3.11915 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 3 2.67813 1.48621 2.46248 0.47827 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 4 1.23869 2.62546 0.59054 2.47930 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 5 0.66879 2.05638 2.06407 1.45748 5 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 6 0.77052 2.60706 1.03741 2.21544 6 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 7 2.31662 2.38338 2.57207 0.31091 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 8 3.03237 3.95142 0.10197 3.52301 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 9 0.10868 3.57028 3.26321 3.30864 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 10 2.92493 2.83643 3.45314 0.15543 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 11 3.03237 3.95142 0.10197 3.52301 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 12 0.10868 3.57028 3.26321 3.30864 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 13 1.43689 0.86229 1.90586 1.65316 13 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 14 0.10868 3.57028 3.26320 3.30864 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 15 0.10868 3.57028 3.26320 3.30864 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 16 0.30750 2.70200 2.38439 2.24906 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 17 0.70118 1.92681 2.05446 1.46870 17 a - - _ 1.38629 1.38629 1.38629 1.38629 0.16476 4.15158 1.99392 1.46634 0.26236 1.09861 0.40547 18 2.69046 2.64080 3.21101 0.19780 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03644 4.02327 4.02327 1.46634 0.26236 0.20798 1.67250 19 3.03237 3.95142 0.10197 3.52301 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 20 2.92493 2.83643 3.45314 0.15543 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 21 2.92493 2.83643 3.45314 0.15543 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 22 2.92493 2.83643 3.45314 0.15543 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 23 2.57596 0.34274 3.17535 1.75844 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 24 2.21669 3.37675 0.21527 2.98483 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 25 3.03237 3.95142 0.10197 3.52301 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 26 2.92493 2.83643 3.45314 0.15543 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 27 3.24559 0.13610 3.81582 2.71392 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 28 3.24559 0.13610 3.81582 2.71392 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 29 3.24559 0.13610 3.81582 2.71392 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 30 0.10868 3.57028 3.26321 3.30864 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 31 1.02312 2.22574 1.12120 1.57672 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 32 0.55290 2.02221 2.33717 1.63089 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 33 2.92493 2.83643 3.45314 0.15543 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 34 3.03237 3.95142 0.10197 3.52301 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 35 0.10868 3.57028 3.26321 3.30864 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 36 2.05793 1.90916 2.67953 0.42238 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06375 4.15158 3.07863 1.46634 0.26236 1.09861 0.40547 37 1.03292 2.39437 0.91505 1.88186 37 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03300 4.12083 4.12083 1.46634 0.26236 0.52117 0.90097 38 1.55742 1.21468 1.91657 1.06303 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 39 1.17945 1.22948 1.90903 1.37879 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.05779 3.20856 4.15158 1.40910 0.28019 1.09861 0.40547 40 1.82446 0.94655 2.49698 0.99890 44 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 41 0.65774 1.99358 1.75469 1.75555 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 42 1.32647 1.16570 1.58498 1.52359 46 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 43 2.92493 2.83643 3.45314 0.15543 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 44 3.03237 3.95142 0.10197 3.52301 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 45 0.10868 3.57028 3.26321 3.30864 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 46 2.92493 2.83643 3.45314 0.15543 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.29965 4.15158 1.41393 1.46634 0.26236 1.09861 0.40547 47 1.37152 1.99764 2.24572 0.68365 51 U - - _ 1.38629 1.38629 1.38629 1.38629 0.12396 3.89353 2.34119 1.46634 0.26236 2.85938 0.05901 48 0.57626 2.17965 2.18947 1.54672 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07948 2.91215 3.81466 2.03400 0.14020 0.09922 2.35959 49 0.98457 2.05648 1.99653 1.01420 62 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 50 0.21528 2.96044 2.85721 2.47144 63 A - - _ 1.38629 1.38629 1.38629 1.38629 0.08185 4.15158 2.76695 1.46634 0.26236 1.09861 0.40547 51 1.64505 0.62002 2.35806 1.74606 64 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03359 4.10332 4.10332 1.46634 0.26236 1.79065 0.18254 52 1.46335 1.14680 2.29154 1.05046 65 u - - _ 1.38629 1.38629 1.38629 1.38629 0.08668 4.10332 2.71033 1.46634 0.26236 0.93486 0.49864 53 1.46457 1.95984 1.04949 1.28076 66 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03457 4.07529 4.07529 1.46634 0.26236 2.03692 0.13976 54 1.87641 2.04263 2.57480 0.44472 67 U - - _ 1.38629 1.38629 1.38629 1.38629 0.12290 4.07529 2.31603 1.46634 0.26236 1.05867 0.42605 55 1.80495 1.94749 2.48965 0.49438 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03655 4.02032 4.02032 1.46634 0.26236 0.37023 1.17305 56 0.47586 2.28557 1.86143 2.10800 69 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03269 4.13016 4.13016 1.46634 0.26236 1.46937 0.26146 57 1.69438 0.77621 2.30280 1.36194 70 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03269 4.13016 4.13016 1.46634 0.26236 1.46937 0.26146 58 0.66131 1.79251 1.84550 1.83673 71 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03269 4.13016 4.13016 1.46634 0.26236 0.61645 0.77622 59 1.77948 2.27929 2.64268 0.41893 72 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 60 2.92493 2.83643 3.45314 0.15543 73 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 61 2.24344 2.45182 2.92302 0.28236 74 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 62 1.26760 2.05178 1.97631 0.79538 75 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 63 2.21150 2.15281 2.50654 0.36708 76 U - - _ 1.38629 1.38629 1.38629 1.38629 0.35016 4.15158 1.27410 1.46634 0.26236 1.09861 0.40547 64 1.90884 1.45681 2.42773 0.63388 77 U - - _ 1.38629 1.38629 1.38629 1.38629 0.33701 1.32910 3.84513 0.15440 1.94444 0.10666 2.29099 65 3.24559 0.13610 3.81582 2.71392 79 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 66 2.92493 2.83643 3.45314 0.15543 80 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 67 3.03237 3.95142 0.10197 3.52301 81 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 68 0.10868 3.57028 3.26321 3.30864 82 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 69 2.71691 0.70872 2.43258 1.03892 83 c - - > 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 70 0.93996 2.62383 0.79882 2.44213 84 g - - > 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 71 3.31042 2.46460 2.99332 0.18834 85 U - - > 1.38629 1.38629 1.38629 1.38629 0.03199 4.15158 4.15158 1.46634 0.26236 1.09861 0.40547 72 2.77876 1.82621 2.50127 0.36401 86 U - - > 1.38629 1.38629 1.38629 1.38629 0.01612 4.13572 * 1.46634 0.26236 0.00000 * //